Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:47665770-51308645

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hk 8 32016544 to 49436343 17419799 heritable phenotypic marker hook
Hbnr12 8 32786988 to 50837502 18050514 QTL Heligmosomoides bakeri nematode resistance 12
Ing2 8 47667178 to 47675159 7981 - protein coding gene inhibitor of growth family, member 2
Cpgi20331 8 47673467 to 47676295 2828 CpG island CpG island 20331
Tssr81240 8 47673472 to 47673483 11 - TSS region transcription start site region 81240
Tssr2565 8 47674824 to 47674833 9 - TSS region transcription start site region 2565
Tssr81241 8 47674835 to 47674868 33 - TSS region transcription start site region 81241
Tssr81242 8 47675112 to 47675126 14 - TSS region transcription start site region 81242
Tssr81243 8 47675130 to 47675165 35 - TSS region transcription start site region 81243
Tssr81244 8 47675179 to 47675190 11 - TSS region transcription start site region 81244
Tssr77337 8 47675362 to 47675413 51 + TSS region transcription start site region 77337
AA386476 8 47675391 to 47685239 9848 + bidirectional promoter lncRNA gene expressed sequence AA386476
Tssr81245 8 47675588 to 47675617 29 - TSS region transcription start site region 81245
Gm31692 8 47681281 to 47695396 14115 - lncRNA gene predicted gene, 31692
Gm31638 8 47685665 to 47700416 14751 + lncRNA gene predicted gene, 31638
Cpgi20332 8 47690882 to 47691033 151 CpG island CpG island 20332
Cdkn2aip 8 47709344 to 47713932 4588 - protein coding gene CDKN2A interacting protein
Tssr81246 8 47710620 to 47710624 4 - TSS region transcription start site region 81246
Tssr81247 8 47711656 to 47711677 21 - TSS region transcription start site region 81247
Cpgi20333 8 47713062 to 47714761 1699 CpG island CpG island 20333
E030037K01Rik 8 47713266 to 47715021 1755 + antisense lncRNA gene RIKEN cDNA E030037K01 gene
Tssr81248 8 47713895 to 47713908 13 - TSS region transcription start site region 81248
Tssr81249 8 47713920 to 47713938 18 - TSS region transcription start site region 81249
Tssr81250 8 47714105 to 47714110 5 - TSS region transcription start site region 81250
Tssr81251 8 47714135 to 47714156 21 - TSS region transcription start site region 81251
Tssr81252 8 47714163 to 47714170 7 - TSS region transcription start site region 81252
Tssr81253 8 47714489 to 47714511 22 - TSS region transcription start site region 81253
n-R5s96 8 47719246 to 47719369 123 + rRNA gene nuclear encoded rRNA 5S 96
Gm31786 8 47744712 to 47750134 5422 - lincRNA gene predicted gene, 31786
Tssr81254 8 47750133 to 47750140 7 - TSS region transcription start site region 81254
Tssr81255 8 47750156 to 47750197 41 - TSS region transcription start site region 81255
Gm45824 8 47764054 to 47766125 2071 - lincRNA gene predicted gene 45824
Gm45864 8 47773555 to 47777802 4247 + lincRNA gene predicted gene 45864
Tssr77338 8 47788842 to 47788848 6 + TSS region transcription start site region 77338
1700061N14Rik 8 47811724 to 47818221 6497 - lincRNA gene RIKEN cDNA 1700061N14 gene
Tssr81256 8 47818179 to 47818184 5 - TSS region transcription start site region 81256
Tssr81257 8 47818199 to 47818225 26 - TSS region transcription start site region 81257
Cldn24 8 47822143 to 47822805 662 + protein coding gene claudin 24
Tssr77339 8 47824459 to 47824471 12 + TSS region transcription start site region 77339
Cldn22 8 47824482 to 47825475 993 + protein coding gene claudin 22
Tssr77340 8 47824530 to 47824542 12 + TSS region transcription start site region 77340
Wwc2 8 47827595 to 47990551 162956 - protein coding gene WW, C2 and coiled-coil domain containing 2
Tssr77341 8 47836927 to 47836929 2 + TSS region transcription start site region 77341
Cpgi20334 8 47847350 to 47847585 235 CpG island CpG island 20334
Tssr77342 8 47853849 to 47853850 1 + TSS region transcription start site region 77342
n-R5s97 8 47899182 to 47899294 112 + rRNA gene nuclear encoded rRNA 5S 97
Tssr81258 8 47941558 to 47941562 4 - TSS region transcription start site region 81258
Gm39173 8 47943096 to 47952674 9578 - lncRNA gene predicted gene, 39173
Tssr81259 8 47948359 to 47948373 14 - TSS region transcription start site region 81259
Tssr81260 8 47948385 to 47948407 22 - TSS region transcription start site region 81260
Gm31984 8 47971635 to 47975581 3946 - lncRNA gene predicted gene, 31984
Tssr81261 8 47974307 to 47974309 2 - TSS region transcription start site region 81261
Cpgi20335 8 47974866 to 47975028 162 CpG island CpG island 20335
Cpgi20336 8 47989481 to 47991409 1928 CpG island CpG island 20336
Tssr81262 8 47990361 to 47990400 39 - TSS region transcription start site region 81262
Tssr81263 8 47990490 to 47990534 44 - TSS region transcription start site region 81263
Tssr81264 8 47990535 to 47990577 42 - TSS region transcription start site region 81264
D8Dcr16 8 47993970 to 47994065 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 16
Gm32052 8 48002239 to 48009157 6918 - lincRNA gene predicted gene, 32052
Tssr81265 8 48009071 to 48009114 43 - TSS region transcription start site region 81265
D8Mit66 8 48058270 to 48058418 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 66
Tssr77343 8 48062110 to 48062129 19 + TSS region transcription start site region 77343
Gm2607 8 48070002 to 48070628 626 - pseudogene predicted gene 2607
Tssr81266 8 48070734 to 48070735 1 - TSS region transcription start site region 81266
Cpgi20337 8 48097452 to 48097775 323 CpG island CpG island 20337
Dctd 8 48099092 to 48141667 42575 + protein coding gene dCMP deaminase
Cpgi20338 8 48109837 to 48110752 915 CpG island CpG island 20338
Tssr77344 8 48109949 to 48110002 53 + TSS region transcription start site region 77344
Tssr77345 8 48110003 to 48110023 20 + TSS region transcription start site region 77345
Tssr77346 8 48110156 to 48110194 38 + TSS region transcription start site region 77346
Tssr77347 8 48136131 to 48136168 37 + TSS region transcription start site region 77347
Gm39174 8 48144215 to 48154388 10173 + lncRNA gene predicted gene, 39174
Gm32194 8 48206587 to 48218650 12063 + lncRNA gene predicted gene, 32194
Gm32923 8 48220031 to 48225571 5540 + lncRNA gene predicted gene, 32923
Cpgi20339 8 48222273 to 48222595 322 CpG island CpG island 20339
Tenm3 8 48227682 to 48843951 616269 - protein coding gene teneurin transmembrane protein 3
Cpgi20340 8 48228338 to 48229274 936 CpG island CpG island 20340
Gm32842 8 48270248 to 48270985 737 - pseudogene predicted gene, 32842
D8Mit298 8 48286279 to 48286401 122 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 298
Cpgi20341 8 48342264 to 48342447 183 CpG island CpG island 20341
D8Mit53 8 48347029 to 48347166 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 53
Tssr77348 8 48347538 to 48347540 2 + TSS region transcription start site region 77348
9430019C24Rik 8 48378506 to 48379684 1178 unclassified gene RIKEN cDNA 9430019C24 gene
Cpgi20342 8 48416852 to 48417088 236 CpG island CpG island 20342
D930044I17Rik 8 48485269 to 48488747 3478 unclassified gene RIKEN cDNA D930044I17 gene
D8Mit127 8 48535288 to 48535438 150 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 127
Tssr81267 8 48552893 to 48552898 5 - TSS region transcription start site region 81267
Cpgi20343 8 48554815 to 48556221 1406 CpG island CpG island 20343
Tssr81268 8 48554878 to 48554900 22 - TSS region transcription start site region 81268
Tssr81269 8 48555200 to 48555244 44 - TSS region transcription start site region 81269
Tssr81270 8 48555257 to 48555268 11 - TSS region transcription start site region 81270
Tssr81271 8 48555270 to 48555303 33 - TSS region transcription start site region 81271
Tssr81272 8 48555402 to 48555431 29 - TSS region transcription start site region 81272
Tssr81273 8 48555897 to 48555981 84 - TSS region transcription start site region 81273
Tssr81274 8 48556007 to 48556088 81 - TSS region transcription start site region 81274
Tssr81275 8 48615642 to 48615651 9 - TSS region transcription start site region 81275
Gm45772 8 48630930 to 48631169 239 - pseudogene predicted gene 45772
Tssr77349 8 48632859 to 48632863 4 + TSS region transcription start site region 77349
Cpgi20344 8 48646177 to 48646409 232 CpG island CpG island 20344
Gm39178 8 48660798 to 48671892 11094 + lncRNA gene predicted gene, 39178
Tssr81276 8 48668607 to 48668629 22 - TSS region transcription start site region 81276
Tssr81277 8 48668710 to 48668731 21 - TSS region transcription start site region 81277
Tssr81278 8 48711036 to 48711037 1 - TSS region transcription start site region 81278
2900073C17Rik 8 48841994 to 48843845 1851 unclassified gene RIKEN cDNA 2900073C17 gene
Cpgi20345 8 48842663 to 48844192 1529 CpG island CpG island 20345
Tssr81279 8 48843264 to 48843320 56 - TSS region transcription start site region 81279
Tssr81280 8 48843360 to 48843379 19 - TSS region transcription start site region 81280
Tssr77350 8 48843517 to 48843528 11 + TSS region transcription start site region 77350
Tssr81281 8 48843662 to 48843684 22 - TSS region transcription start site region 81281
Gm19744 8 48843665 to 48869901 26236 + unclassified non-coding RNA gene predicted gene, 19744
Tssr81282 8 48843804 to 48843827 23 - TSS region transcription start site region 81282
Tssr81283 8 48843880 to 48843894 14 - TSS region transcription start site region 81283
Gm25830 8 48958350 to 48958481 131 - snoRNA gene predicted gene, 25830
Gm45830 8 49044280 to 49046017 1737 + lincRNA gene predicted gene 45830
Gm45829 8 49063879 to 49071859 7980 + lincRNA gene predicted gene 45829
D8Mit99 8 49093791 to 49094000 209 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 99
Hpvc1 8 49184532 to 49186665 2133 protein coding gene human papillomavirus 18 E5 central sequence motif gene 1
D8Mit177 8 49191926 to 49192054 128 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 177
Gm45832 8 49230527 to 49231969 1442 - unclassified gene predicted gene 45832
4930555F03Rik 8 49370886 to 49548994 178108 + lincRNA gene RIKEN cDNA 4930555F03 gene
Tssr77351 8 49370917 to 49370922 5 + TSS region transcription start site region 77351
Tssr77352 8 49370928 to 49370955 27 + TSS region transcription start site region 77352
Tssr81284 8 49430628 to 49430632 4 - TSS region transcription start site region 81284
D8Mit6 8 49436178 to 49436343 165 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 6
Gm45577 8 49462453 to 49464739 2286 - unclassified gene predicted gene 45577
Tssr77353 8 49485445 to 49485487 42 + TSS region transcription start site region 77353
Gm45697 8 49485770 to 49488645 2875 - unclassified gene predicted gene 45697
Gm45696 8 49521424 to 49522408 984 + unclassified gene predicted gene 45696
6430514K02Rik 8 49738479 to 49739895 1416 unclassified gene RIKEN cDNA 6430514K02 gene
Gm45321 8 49818937 to 49949006 130069 + lincRNA gene predicted gene 45321
Tssr77354 8 49819099 to 49819113 14 + TSS region transcription start site region 77354
Gm45322 8 49838068 to 49839428 1360 + lincRNA gene predicted gene 45322
D8Ertd268e 8 49951912 to 49952158 246 DNA segment DNA segment, Chr 8, ERATO Doi 268, expressed
Gm45323 8 49959483 to 50013384 53901 - lincRNA gene predicted gene 45323
Gm45324 8 49989907 to 49995544 5637 + unclassified gene predicted gene 45324
Gm45341 8 50117745 to 50517889 400144 - lincRNA gene predicted gene 45341
Gm45455 8 50201613 to 50517680 316067 - lincRNA gene predicted gene 45455
Tssr81285 8 50326838 to 50326842 4 - TSS region transcription start site region 81285
Gm2516 8 50368112 to 50416088 47976 + lincRNA gene predicted gene 2516
Gm45259 8 50389092 to 50390097 1005 + unclassified gene predicted gene 45259
Tssr81286 8 50517647 to 50517665 18 - TSS region transcription start site region 81286
Tssr81287 8 50555980 to 50555983 3 - TSS region transcription start site region 81287
Gm23986 8 50563241 to 50563303 62 + snRNA gene predicted gene, 23986
C130073E24Rik 8 50743291 to 50916997 173706 - lincRNA gene RIKEN cDNA C130073E24 gene
1700019L22Rik 8 50764515 to 50918746 154231 - lncRNA gene RIKEN cDNA 1700019L22 gene
Tssr77355 8 50823792 to 50823796 4 + TSS region transcription start site region 77355
D8Dcr17 8 50837361 to 50837458 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 17
Ltq1 8 50837362 to 50837502 140 QTL lung tumor QTL 1
D8Mit205 8 50837362 to 50837502 140 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 205
Trigq2 8 50837362 to 50837502 140 QTL triglyceride QTL 2
Cpgi20346 8 50915317 to 50916731 1414 CpG island CpG island 20346
Tssr81288 8 50916110 to 50916121 11 - TSS region transcription start site region 81288
Tssr81289 8 50916171 to 50916204 33 - TSS region transcription start site region 81289
Tssr81290 8 50916208 to 50916224 16 - TSS region transcription start site region 81290
Gm45386 8 51137630 to 51137847 217 + pseudogene predicted gene 45386
Gm32975 8 51177683 to 51180608 2925 + lincRNA gene predicted gene, 32975
D8Dcr18 8 51234711 to 51234808 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 18
Gm8679 8 51275890 to 51276757 867 + pseudogene predicted gene 8679