Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:47240156-48980194

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155 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stox2 8 47180048 to 47412459 232411 - protein coding gene storkhead box 2
D8Mit126 8 47246020 to 47246166 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 126
Tssr2562 8 47249299 to 47249300 1 - TSS region transcription start site region 2562
Tssr81221 8 47254760 to 47254773 13 - TSS region transcription start site region 81221
Tssr81222 8 47267938 to 47267943 5 - TSS region transcription start site region 81222
Cpgi20325 8 47287224 to 47287462 238 CpG island CpG island 20325
Cpgi20326 8 47287598 to 47289827 2229 CpG island CpG island 20326
Tssr81223 8 47288130 to 47288160 30 - TSS region transcription start site region 81223
Tssr81224 8 47288284 to 47288295 11 - TSS region transcription start site region 81224
Tssr77334 8 47288403 to 47288419 16 + TSS region transcription start site region 77334
Tssr81225 8 47288447 to 47288476 29 - TSS region transcription start site region 81225
Tssr81226 8 47289323 to 47289349 26 - TSS region transcription start site region 81226
Tssr81227 8 47289354 to 47289384 30 - TSS region transcription start site region 81227
Tssr81228 8 47289394 to 47289411 17 - TSS region transcription start site region 81228
Tssr81229 8 47289413 to 47289461 48 - TSS region transcription start site region 81229
Tssr2563 8 47289640 to 47289648 8 - TSS region transcription start site region 2563
4930448N21Rik 8 47294271 to 47446361 152090 unclassified gene RIKEN cDNA 4930448N21 gene
Tssr81230 8 47323166 to 47323175 9 - TSS region transcription start site region 81230
Gm39171 8 47323514 to 47324515 1001 + lncRNA gene predicted gene, 39171
Tssr77335 8 47334457 to 47334471 14 + TSS region transcription start site region 77335
Tssr81231 8 47352352 to 47352367 15 - TSS region transcription start site region 81231
Tssr81232 8 47352486 to 47352501 15 - TSS region transcription start site region 81232
Cpgi20327 8 47392420 to 47392580 160 CpG island CpG island 20327
Cpgi20328 8 47412357 to 47414093 1736 CpG island CpG island 20328
Gm10083 8 47412408 to 47414164 1756 + protein coding gene predicted gene 10083
Tssr81233 8 47413646 to 47413686 40 - TSS region transcription start site region 81233
Tssr81234 8 47413779 to 47413826 47 - TSS region transcription start site region 81234
Tssr81235 8 47413833 to 47413855 22 - TSS region transcription start site region 81235
Tssr2564 8 47425613 to 47425615 2 + TSS region transcription start site region 2564
Gm22857 8 47440418 to 47440551 133 + snoRNA gene predicted gene, 22857
Trappc11 8 47490128 to 47533470 43342 - protein coding gene trafficking protein particle complex 11
Cpgi20329 8 47533080 to 47534254 1174 CpG island CpG island 20329
Tssr81236 8 47533405 to 47533412 7 - TSS region transcription start site region 81236
Tssr81237 8 47533422 to 47533436 14 - TSS region transcription start site region 81237
Tssr81238 8 47533439 to 47533477 38 - TSS region transcription start site region 81238
Tssr77336 8 47533639 to 47533709 70 + TSS region transcription start site region 77336
Rwdd4a 8 47533645 to 47552837 19192 + protein coding gene RWD domain containing 4A
Gm45576 8 47557529 to 47567896 10367 + lincRNA gene predicted gene 45576
Gm27409 8 47591668 to 47591747 79 + miRNA gene predicted gene, 27409
Gm39172 8 47594821 to 47595550 729 + lncRNA gene predicted gene, 39172
Gm45575 8 47627553 to 47628100 547 - pseudogene predicted gene 45575
Gm8623 8 47632329 to 47632764 435 - pseudogene predicted gene 8623
Tssr81239 8 47632810 to 47632820 10 - TSS region transcription start site region 81239
Cpgi20330 8 47646679 to 47647240 561 CpG island CpG island 20330
Ing2 8 47667178 to 47675159 7981 - protein coding gene inhibitor of growth family, member 2
Cpgi20331 8 47673467 to 47676295 2828 CpG island CpG island 20331
Tssr81240 8 47673472 to 47673483 11 - TSS region transcription start site region 81240
Tssr2565 8 47674824 to 47674833 9 - TSS region transcription start site region 2565
Tssr81241 8 47674835 to 47674868 33 - TSS region transcription start site region 81241
Tssr81242 8 47675112 to 47675126 14 - TSS region transcription start site region 81242
Tssr81243 8 47675130 to 47675165 35 - TSS region transcription start site region 81243
Tssr81244 8 47675179 to 47675190 11 - TSS region transcription start site region 81244
Tssr77337 8 47675362 to 47675413 51 + TSS region transcription start site region 77337
AA386476 8 47675391 to 47685239 9848 + bidirectional promoter lncRNA gene expressed sequence AA386476
Tssr81245 8 47675588 to 47675617 29 - TSS region transcription start site region 81245
Gm31692 8 47681281 to 47695396 14115 - lncRNA gene predicted gene, 31692
Gm31638 8 47685665 to 47700416 14751 + lncRNA gene predicted gene, 31638
Cpgi20332 8 47690882 to 47691033 151 CpG island CpG island 20332
Cdkn2aip 8 47709344 to 47713932 4588 - protein coding gene CDKN2A interacting protein
Tssr81246 8 47710620 to 47710624 4 - TSS region transcription start site region 81246
Tssr81247 8 47711656 to 47711677 21 - TSS region transcription start site region 81247
Cpgi20333 8 47713062 to 47714761 1699 CpG island CpG island 20333
E030037K01Rik 8 47713266 to 47715021 1755 + antisense lncRNA gene RIKEN cDNA E030037K01 gene
Tssr81248 8 47713895 to 47713908 13 - TSS region transcription start site region 81248
Tssr81249 8 47713920 to 47713938 18 - TSS region transcription start site region 81249
Tssr81250 8 47714105 to 47714110 5 - TSS region transcription start site region 81250
Tssr81251 8 47714135 to 47714156 21 - TSS region transcription start site region 81251
Tssr81252 8 47714163 to 47714170 7 - TSS region transcription start site region 81252
Tssr81253 8 47714489 to 47714511 22 - TSS region transcription start site region 81253
n-R5s96 8 47719246 to 47719369 123 + rRNA gene nuclear encoded rRNA 5S 96
Gm31786 8 47744712 to 47750134 5422 - lincRNA gene predicted gene, 31786
Tssr81254 8 47750133 to 47750140 7 - TSS region transcription start site region 81254
Tssr81255 8 47750156 to 47750197 41 - TSS region transcription start site region 81255
Gm45824 8 47764054 to 47766125 2071 - lincRNA gene predicted gene 45824
Gm45864 8 47773555 to 47777802 4247 + lincRNA gene predicted gene 45864
Tssr77338 8 47788842 to 47788848 6 + TSS region transcription start site region 77338
1700061N14Rik 8 47811724 to 47818221 6497 - lincRNA gene RIKEN cDNA 1700061N14 gene
Tssr81256 8 47818179 to 47818184 5 - TSS region transcription start site region 81256
Tssr81257 8 47818199 to 47818225 26 - TSS region transcription start site region 81257
Cldn24 8 47822143 to 47822805 662 + protein coding gene claudin 24
Tssr77339 8 47824459 to 47824471 12 + TSS region transcription start site region 77339
Cldn22 8 47824482 to 47825475 993 + protein coding gene claudin 22
Tssr77340 8 47824530 to 47824542 12 + TSS region transcription start site region 77340
Wwc2 8 47827595 to 47990551 162956 - protein coding gene WW, C2 and coiled-coil domain containing 2
Tssr77341 8 47836927 to 47836929 2 + TSS region transcription start site region 77341
Cpgi20334 8 47847350 to 47847585 235 CpG island CpG island 20334
Tssr77342 8 47853849 to 47853850 1 + TSS region transcription start site region 77342
n-R5s97 8 47899182 to 47899294 112 + rRNA gene nuclear encoded rRNA 5S 97
Tssr81258 8 47941558 to 47941562 4 - TSS region transcription start site region 81258
Gm39173 8 47943096 to 47952674 9578 - lncRNA gene predicted gene, 39173
Tssr81259 8 47948359 to 47948373 14 - TSS region transcription start site region 81259
Tssr81260 8 47948385 to 47948407 22 - TSS region transcription start site region 81260
Gm31984 8 47971635 to 47975581 3946 - lncRNA gene predicted gene, 31984
Tssr81261 8 47974307 to 47974309 2 - TSS region transcription start site region 81261
Cpgi20335 8 47974866 to 47975028 162 CpG island CpG island 20335
Cpgi20336 8 47989481 to 47991409 1928 CpG island CpG island 20336
Tssr81262 8 47990361 to 47990400 39 - TSS region transcription start site region 81262
Tssr81263 8 47990490 to 47990534 44 - TSS region transcription start site region 81263
Tssr81264 8 47990535 to 47990577 42 - TSS region transcription start site region 81264
D8Dcr16 8 47993970 to 47994065 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 16
Gm32052 8 48002239 to 48009157 6918 - lincRNA gene predicted gene, 32052
Tssr81265 8 48009071 to 48009114 43 - TSS region transcription start site region 81265
D8Mit66 8 48058270 to 48058418 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 66
Tssr77343 8 48062110 to 48062129 19 + TSS region transcription start site region 77343
Gm2607 8 48070002 to 48070628 626 - pseudogene predicted gene 2607
Tssr81266 8 48070734 to 48070735 1 - TSS region transcription start site region 81266
Cpgi20337 8 48097452 to 48097775 323 CpG island CpG island 20337
Dctd 8 48099092 to 48141667 42575 + protein coding gene dCMP deaminase
Cpgi20338 8 48109837 to 48110752 915 CpG island CpG island 20338
Tssr77344 8 48109949 to 48110002 53 + TSS region transcription start site region 77344
Tssr77345 8 48110003 to 48110023 20 + TSS region transcription start site region 77345
Tssr77346 8 48110156 to 48110194 38 + TSS region transcription start site region 77346
Tssr77347 8 48136131 to 48136168 37 + TSS region transcription start site region 77347
Gm39174 8 48144215 to 48154388 10173 + lncRNA gene predicted gene, 39174
Gm32194 8 48206587 to 48218650 12063 + lncRNA gene predicted gene, 32194
Gm32923 8 48220031 to 48225571 5540 + lncRNA gene predicted gene, 32923
Cpgi20339 8 48222273 to 48222595 322 CpG island CpG island 20339
Tenm3 8 48227682 to 48843951 616269 - protein coding gene teneurin transmembrane protein 3
Cpgi20340 8 48228338 to 48229274 936 CpG island CpG island 20340
Gm32842 8 48270248 to 48270985 737 - pseudogene predicted gene, 32842
D8Mit298 8 48286279 to 48286401 122 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 298
Cpgi20341 8 48342264 to 48342447 183 CpG island CpG island 20341
D8Mit53 8 48347029 to 48347166 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 53
Tssr77348 8 48347538 to 48347540 2 + TSS region transcription start site region 77348
9430019C24Rik 8 48378506 to 48379684 1178 unclassified gene RIKEN cDNA 9430019C24 gene
Cpgi20342 8 48416852 to 48417088 236 CpG island CpG island 20342
D930044I17Rik 8 48485269 to 48488747 3478 unclassified gene RIKEN cDNA D930044I17 gene
D8Mit127 8 48535288 to 48535438 150 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 127
Tssr81267 8 48552893 to 48552898 5 - TSS region transcription start site region 81267
Cpgi20343 8 48554815 to 48556221 1406 CpG island CpG island 20343
Tssr81268 8 48554878 to 48554900 22 - TSS region transcription start site region 81268
Tssr81269 8 48555200 to 48555244 44 - TSS region transcription start site region 81269
Tssr81270 8 48555257 to 48555268 11 - TSS region transcription start site region 81270
Tssr81271 8 48555270 to 48555303 33 - TSS region transcription start site region 81271
Tssr81272 8 48555402 to 48555431 29 - TSS region transcription start site region 81272
Tssr81273 8 48555897 to 48555981 84 - TSS region transcription start site region 81273
Tssr81274 8 48556007 to 48556088 81 - TSS region transcription start site region 81274
Tssr81275 8 48615642 to 48615651 9 - TSS region transcription start site region 81275
Gm45772 8 48630930 to 48631169 239 - pseudogene predicted gene 45772
Tssr77349 8 48632859 to 48632863 4 + TSS region transcription start site region 77349
Cpgi20344 8 48646177 to 48646409 232 CpG island CpG island 20344
Gm39178 8 48660798 to 48671892 11094 + lncRNA gene predicted gene, 39178
Tssr81276 8 48668607 to 48668629 22 - TSS region transcription start site region 81276
Tssr81277 8 48668710 to 48668731 21 - TSS region transcription start site region 81277
Tssr81278 8 48711036 to 48711037 1 - TSS region transcription start site region 81278
2900073C17Rik 8 48841994 to 48843845 1851 unclassified gene RIKEN cDNA 2900073C17 gene
Cpgi20345 8 48842663 to 48844192 1529 CpG island CpG island 20345
Tssr81279 8 48843264 to 48843320 56 - TSS region transcription start site region 81279
Tssr81280 8 48843360 to 48843379 19 - TSS region transcription start site region 81280
Tssr77350 8 48843517 to 48843528 11 + TSS region transcription start site region 77350
Tssr81281 8 48843662 to 48843684 22 - TSS region transcription start site region 81281
Gm19744 8 48843665 to 48869901 26236 + unclassified non-coding RNA gene predicted gene, 19744
Tssr81282 8 48843804 to 48843827 23 - TSS region transcription start site region 81282
Tssr81283 8 48843880 to 48843894 14 - TSS region transcription start site region 81283
Gm25830 8 48958350 to 48958481 131 - snoRNA gene predicted gene, 25830