Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:46778130-47798160

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
Irf2 8 46739745 to 46847458 107713 + protein coding gene interferon regulatory factor 2
Tssr77289 8 46788348 to 46788362 14 + TSS region transcription start site region 77289
Tssr77290 8 46791879 to 46791883 4 + TSS region transcription start site region 77290
Tssr77291 8 46791929 to 46791942 13 + TSS region transcription start site region 77291
Tssr77292 8 46793502 to 46793522 20 + TSS region transcription start site region 77292
Tssr77293 8 46795162 to 46795188 26 + TSS region transcription start site region 77293
D8Mit98 8 46801472 to 46801619 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 98
Tssr77294 8 46806469 to 46806482 13 + TSS region transcription start site region 77294
Tssr77295 8 46806496 to 46806512 16 + TSS region transcription start site region 77295
Tssr77296 8 46806518 to 46806538 20 + TSS region transcription start site region 77296
Tssr77297 8 46807232 to 46807243 11 + TSS region transcription start site region 77297
Tssr77298 8 46814152 to 46814162 10 + TSS region transcription start site region 77298
Tssr77299 8 46818812 to 46818850 38 + TSS region transcription start site region 77299
Gm39170 8 46826701 to 46829108 2407 - lncRNA gene predicted gene, 39170
Tssr81216 8 46828480 to 46828493 13 - TSS region transcription start site region 81216
Gm45481 8 46833036 to 46833912 876 - unclassified gene predicted gene 45481
Tssr77300 8 46834138 to 46834155 17 + TSS region transcription start site region 77300
Tssr77301 8 46837564 to 46837577 13 + TSS region transcription start site region 77301
Tssr77302 8 46837729 to 46837740 11 + TSS region transcription start site region 77302
Tssr77303 8 46843114 to 46843126 12 + TSS region transcription start site region 77303
Tssr77304 8 46844806 to 46844847 41 + TSS region transcription start site region 77304
Tssr77305 8 46846122 to 46846133 11 + TSS region transcription start site region 77305
Tssr77306 8 46846427 to 46846438 11 + TSS region transcription start site region 77306
Tssr77307 8 46846458 to 46846470 12 + TSS region transcription start site region 77307
Tssr77308 8 46846497 to 46846521 24 + TSS region transcription start site region 77308
Tssr77309 8 46846539 to 46846555 16 + TSS region transcription start site region 77309
Tssr77310 8 46846560 to 46846575 15 + TSS region transcription start site region 77310
Tssr77311 8 46846616 to 46846627 11 + TSS region transcription start site region 77311
Tssr77312 8 46846635 to 46846649 14 + TSS region transcription start site region 77312
Tssr77313 8 46846746 to 46846767 21 + TSS region transcription start site region 77313
Tssr77314 8 46846775 to 46846798 23 + TSS region transcription start site region 77314
Tssr77315 8 46847202 to 46847213 11 + TSS region transcription start site region 77315
Tssr77316 8 46851894 to 46851921 27 + TSS region transcription start site region 77316
Tssr77317 8 46852656 to 46852662 6 + TSS region transcription start site region 77317
Tssr77318 8 46852667 to 46852678 11 + TSS region transcription start site region 77318
Tssr77319 8 46852692 to 46852703 11 + TSS region transcription start site region 77319
Tssr77320 8 46852735 to 46852744 9 + TSS region transcription start site region 77320
Tssr77321 8 46852766 to 46852782 16 + TSS region transcription start site region 77321
Tssr81217 8 46868318 to 46868329 11 - TSS region transcription start site region 81217
Tssr77322 8 46868457 to 46868496 39 + TSS region transcription start site region 77322
Tssr77323 8 46887563 to 46887579 16 + TSS region transcription start site region 77323
Tssr77324 8 46890497 to 46890524 27 + TSS region transcription start site region 77324
Tssr77325 8 46890529 to 46890569 40 + TSS region transcription start site region 77325
Tssr77326 8 46921854 to 46921880 26 + TSS region transcription start site region 77326
Tssr77327 8 46934477 to 46934514 37 + TSS region transcription start site region 77327
Tssr81218 8 46941285 to 46941321 36 - TSS region transcription start site region 81218
1700011L03Rik 8 46946795 to 46948799 2004 - lincRNA gene RIKEN cDNA 1700011L03 gene
Cpgi20323 8 46965909 to 46966103 194 CpG island CpG island 20323
Tssr77328 8 46986883 to 46986891 8 + TSS region transcription start site region 77328
Enpp6 8 46986887 to 47096762 109875 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 6
Tssr77329 8 46986898 to 46986910 12 + TSS region transcription start site region 77329
Tssr77330 8 46986913 to 46986962 49 + TSS region transcription start site region 77330
Gm45600 8 46994795 to 47014177 19382 - antisense lncRNA gene predicted gene 45600
D8Dcr15 8 46999407 to 46999502 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 15
4930579M01Rik 8 47026805 to 47038177 11372 - antisense lncRNA gene RIKEN cDNA 4930579M01 gene
Gm31231 8 47075018 to 47082406 7388 - lncRNA gene predicted gene, 31231
Tssr77331 8 47093757 to 47093761 4 + TSS region transcription start site region 77331
Tssr77332 8 47094807 to 47094816 9 + TSS region transcription start site region 77332
E330018M18Rik 8 47135651 to 47163704 28053 + lincRNA gene RIKEN cDNA E330018M18 gene
Tssr81219 8 47166085 to 47166087 2 - TSS region transcription start site region 81219
Stox2 8 47180048 to 47412459 232411 - protein coding gene storkhead box 2
Cpgi20324 8 47193113 to 47193565 452 CpG island CpG island 20324
Tssr81220 8 47220619 to 47220630 11 - TSS region transcription start site region 81220
Tssr77333 8 47220752 to 47220763 11 + TSS region transcription start site region 77333
Gm45537 8 47224459 to 47227166 2707 - unclassified gene predicted gene 45537
D8Mit126 8 47246020 to 47246166 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 126
Tssr2562 8 47249299 to 47249300 1 - TSS region transcription start site region 2562
Tssr81221 8 47254760 to 47254773 13 - TSS region transcription start site region 81221
Tssr81222 8 47267938 to 47267943 5 - TSS region transcription start site region 81222
Cpgi20325 8 47287224 to 47287462 238 CpG island CpG island 20325
Cpgi20326 8 47287598 to 47289827 2229 CpG island CpG island 20326
Tssr81223 8 47288130 to 47288160 30 - TSS region transcription start site region 81223
Tssr81224 8 47288284 to 47288295 11 - TSS region transcription start site region 81224
Tssr77334 8 47288403 to 47288419 16 + TSS region transcription start site region 77334
Tssr81225 8 47288447 to 47288476 29 - TSS region transcription start site region 81225
Tssr81226 8 47289323 to 47289349 26 - TSS region transcription start site region 81226
Tssr81227 8 47289354 to 47289384 30 - TSS region transcription start site region 81227
Tssr81228 8 47289394 to 47289411 17 - TSS region transcription start site region 81228
Tssr81229 8 47289413 to 47289461 48 - TSS region transcription start site region 81229
Tssr2563 8 47289640 to 47289648 8 - TSS region transcription start site region 2563
4930448N21Rik 8 47294271 to 47446361 152090 unclassified gene RIKEN cDNA 4930448N21 gene
Tssr81230 8 47323166 to 47323175 9 - TSS region transcription start site region 81230
Gm39171 8 47323514 to 47324515 1001 + lncRNA gene predicted gene, 39171
Tssr77335 8 47334457 to 47334471 14 + TSS region transcription start site region 77335
Tssr81231 8 47352352 to 47352367 15 - TSS region transcription start site region 81231
Tssr81232 8 47352486 to 47352501 15 - TSS region transcription start site region 81232
Cpgi20327 8 47392420 to 47392580 160 CpG island CpG island 20327
Cpgi20328 8 47412357 to 47414093 1736 CpG island CpG island 20328
Gm10083 8 47412408 to 47414164 1756 + protein coding gene predicted gene 10083
Tssr81233 8 47413646 to 47413686 40 - TSS region transcription start site region 81233
Tssr81234 8 47413779 to 47413826 47 - TSS region transcription start site region 81234
Tssr81235 8 47413833 to 47413855 22 - TSS region transcription start site region 81235
Tssr2564 8 47425613 to 47425615 2 + TSS region transcription start site region 2564
Gm22857 8 47440418 to 47440551 133 + snoRNA gene predicted gene, 22857
Trappc11 8 47490128 to 47533470 43342 - protein coding gene trafficking protein particle complex 11
Cpgi20329 8 47533080 to 47534254 1174 CpG island CpG island 20329
Tssr81236 8 47533405 to 47533412 7 - TSS region transcription start site region 81236
Tssr81237 8 47533422 to 47533436 14 - TSS region transcription start site region 81237
Tssr81238 8 47533439 to 47533477 38 - TSS region transcription start site region 81238
Tssr77336 8 47533639 to 47533709 70 + TSS region transcription start site region 77336
Rwdd4a 8 47533645 to 47552837 19192 + protein coding gene RWD domain containing 4A
Gm45576 8 47557529 to 47567896 10367 + lincRNA gene predicted gene 45576
Gm27409 8 47591668 to 47591747 79 + miRNA gene predicted gene, 27409
Gm39172 8 47594821 to 47595550 729 + lncRNA gene predicted gene, 39172
Gm45575 8 47627553 to 47628100 547 - pseudogene predicted gene 45575
Gm8623 8 47632329 to 47632764 435 - pseudogene predicted gene 8623
Tssr81239 8 47632810 to 47632820 10 - TSS region transcription start site region 81239
Cpgi20330 8 47646679 to 47647240 561 CpG island CpG island 20330
Ing2 8 47667178 to 47675159 7981 - protein coding gene inhibitor of growth family, member 2
Cpgi20331 8 47673467 to 47676295 2828 CpG island CpG island 20331
Tssr81240 8 47673472 to 47673483 11 - TSS region transcription start site region 81240
Tssr2565 8 47674824 to 47674833 9 - TSS region transcription start site region 2565
Tssr81241 8 47674835 to 47674868 33 - TSS region transcription start site region 81241
Tssr81242 8 47675112 to 47675126 14 - TSS region transcription start site region 81242
Tssr81243 8 47675130 to 47675165 35 - TSS region transcription start site region 81243
Tssr81244 8 47675179 to 47675190 11 - TSS region transcription start site region 81244
Tssr77337 8 47675362 to 47675413 51 + TSS region transcription start site region 77337
AA386476 8 47675391 to 47685239 9848 + bidirectional promoter lncRNA gene expressed sequence AA386476
Tssr81245 8 47675588 to 47675617 29 - TSS region transcription start site region 81245
Gm31692 8 47681281 to 47695396 14115 - lncRNA gene predicted gene, 31692
Gm31638 8 47685665 to 47700416 14751 + lncRNA gene predicted gene, 31638
Cpgi20332 8 47690882 to 47691033 151 CpG island CpG island 20332
Cdkn2aip 8 47709344 to 47713932 4588 - protein coding gene CDKN2A interacting protein
Tssr81246 8 47710620 to 47710624 4 - TSS region transcription start site region 81246
Tssr81247 8 47711656 to 47711677 21 - TSS region transcription start site region 81247
Cpgi20333 8 47713062 to 47714761 1699 CpG island CpG island 20333
E030037K01Rik 8 47713266 to 47715021 1755 + antisense lncRNA gene RIKEN cDNA E030037K01 gene
Tssr81248 8 47713895 to 47713908 13 - TSS region transcription start site region 81248
Tssr81249 8 47713920 to 47713938 18 - TSS region transcription start site region 81249
Tssr81250 8 47714105 to 47714110 5 - TSS region transcription start site region 81250
Tssr81251 8 47714135 to 47714156 21 - TSS region transcription start site region 81251
Tssr81252 8 47714163 to 47714170 7 - TSS region transcription start site region 81252
Tssr81253 8 47714489 to 47714511 22 - TSS region transcription start site region 81253
n-R5s96 8 47719246 to 47719369 123 + rRNA gene nuclear encoded rRNA 5S 96
Gm31786 8 47744712 to 47750134 5422 - lincRNA gene predicted gene, 31786
Tssr81254 8 47750133 to 47750140 7 - TSS region transcription start site region 81254
Tssr81255 8 47750156 to 47750197 41 - TSS region transcription start site region 81255
Gm45824 8 47764054 to 47766125 2071 - lincRNA gene predicted gene 45824
Gm45864 8 47773555 to 47777802 4247 + lincRNA gene predicted gene 45864
Tssr77338 8 47788842 to 47788848 6 + TSS region transcription start site region 77338