Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:4675427-6735495

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20057 8 4677202 to 4678795 1593 CpG island CpG island 20057
Tssr80279 8 4677319 to 4677339 20 - TSS region transcription start site region 80279
Gm7461 8 4677539 to 4678365 826 - unclassified non-coding RNA gene predicted gene 7461
Tssr80280 8 4678338 to 4678356 18 - TSS region transcription start site region 80280
Tssr76139 8 4678446 to 4678486 40 + TSS region transcription start site region 76139
Gm6410 8 4678462 to 4688494 10032 + lincRNA gene predicted gene 6410
Tssr76140 8 4678528 to 4678538 10 + TSS region transcription start site region 76140
Tssr76141 8 4678661 to 4678675 14 + TSS region transcription start site region 76141
D8Mit1011 8 4680714 to 4680840 126 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1011
Gm2676 8 4713207 to 4713812 605 + pseudogene predicted gene 2676
Gm44959 8 4722606 to 4722836 230 - pseudogene predicted gene 44959
Gm39124 8 4724636 to 4728105 3469 - lncRNA gene predicted gene, 39124
Shcbp1 8 4735980 to 4779534 43554 - protein coding gene Shc SH2-domain binding protein 1
Tssr76142 8 4777799 to 4777817 18 + TSS region transcription start site region 76142
Cpgi20058 8 4778013 to 4778205 192 CpG island CpG island 20058
Gm6334 8 4778042 to 4778269 227 + pseudogene predicted gene 6334
Cpgi20059 8 4779219 to 4779683 464 CpG island CpG island 20059
Tssr80281 8 4779451 to 4779458 7 - TSS region transcription start site region 80281
Tssr80282 8 4779461 to 4779471 10 - TSS region transcription start site region 80282
Tssr80283 8 4779472 to 4779487 15 - TSS region transcription start site region 80283
Tssr80284 8 4779513 to 4779591 78 - TSS region transcription start site region 80284
Gm44960 8 4812530 to 4812670 140 + pseudogene predicted gene 44960
Gm9457 8 4812817 to 4813434 617 - pseudogene predicted gene 9457
Tssr80285 8 4813461 to 4813462 1 - TSS region transcription start site region 80285
Gm44961 8 4821035 to 4821230 195 - pseudogene predicted gene 44961
Tssr76143 8 4861127 to 4861135 8 + TSS region transcription start site region 76143
Rpl21-ps14 8 4861169 to 4861651 482 + pseudogene ribosomal protein L21, pseudogene 14
D8Mit153 8 4864820 to 4864943 123 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 153
D8Mit155 8 4976602 to 4976751 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 155
n-R5s93 8 5069259 to 5069377 118 - rRNA gene nuclear encoded rRNA 5S 93
Gm5739 8 5079297 to 5080993 1696 + pseudogene predicted gene 5739
Tssr76144 8 5080192 to 5080204 12 + TSS region transcription start site region 76144
Slc10a2 8 5083219 to 5105287 22068 - protein coding gene solute carrier family 10, member 2
Tssr80286 8 5085607 to 5085611 4 - TSS region transcription start site region 80286
Tssr80287 8 5085929 to 5085963 34 - TSS region transcription start site region 80287
Tssr80288 8 5105240 to 5105254 14 - TSS region transcription start site region 80288
Tssr80289 8 5105326 to 5105337 11 - TSS region transcription start site region 80289
Tssr80290 8 5105347 to 5105358 11 - TSS region transcription start site region 80290
Tssr80291 8 5105401 to 5105409 8 - TSS region transcription start site region 80291
Tssr76145 8 5117299 to 5117322 23 + TSS region transcription start site region 76145
Tssr76146 8 5117324 to 5117351 27 + TSS region transcription start site region 76146
Gm5605 8 5117361 to 5118665 1304 + pseudogene predicted gene 5605
Tssr76147 8 5210767 to 5210770 3 + TSS region transcription start site region 76147
n-R5s94 8 5332995 to 5333113 118 - rRNA gene nuclear encoded rRNA 5S 94
Gm44693 8 5436984 to 5440990 4006 - lincRNA gene predicted gene 44693
Gm6426 8 5527689 to 5528539 850 + pseudogene predicted gene 6426
Tssr76148 8 5578315 to 5578324 9 + TSS region transcription start site region 76148
Tssr76149 8 5639499 to 5639512 13 + TSS region transcription start site region 76149
Tssr76150 8 5639514 to 5639535 21 + TSS region transcription start site region 76150
Gm1840 8 5639580 to 5641008 1428 + pseudogene predicted gene 1840
Tssr76151 8 5640200 to 5640241 41 + TSS region transcription start site region 76151
Tssr76152 8 5640792 to 5640806 14 + TSS region transcription start site region 76152
Gm22565 8 5705427 to 5705495 68 + miRNA gene predicted gene, 22565
D8Mit149 8 5958595 to 5958712 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 149
Gm2734 8 5993984 to 5994723 739 - pseudogene predicted gene 2734
Gm44843 8 6034867 to 6036262 1395 + unclassified gene predicted gene 44843
Gm44842 8 6218668 to 6222039 3371 + unclassified gene predicted gene 44842
Gm24288 8 6223819 to 6223962 143 - snoRNA gene predicted gene, 24288
Gm44844 8 6437744 to 6438079 335 + pseudogene predicted gene 44844
nr 8 13650928 to 4976602 -8674326 heritable phenotypic marker nervous