Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:46541616-47151627

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
Cpgi20318 8 46551601 to 46552615 1014 CpG island CpG island 20318
Tssr81209 8 46551727 to 46551742 15 - TSS region transcription start site region 81209
Tssr77271 8 46552024 to 46552079 55 + TSS region transcription start site region 77271
Cenpu 8 46552028 to 46580007 27979 + protein coding gene centromere protein U
Primpol 8 46575594 to 46617212 41618 - protein coding gene primase and polymerase (DNA-directed)
Gm45607 8 46604749 to 46605963 1214 + antisense lncRNA gene predicted gene 45607
Cpgi20319 8 46616697 to 46618001 1304 CpG island CpG island 20319
Tssr81210 8 46617167 to 46617225 58 - TSS region transcription start site region 81210
Casp3 8 46617291 to 46639689 22398 + protein coding gene caspase 3
Tssr77272 8 46617383 to 46617385 2 + TSS region transcription start site region 77272
Tssr77273 8 46617389 to 46617417 28 + TSS region transcription start site region 77273
Tssr77274 8 46617426 to 46617446 20 + TSS region transcription start site region 77274
Tssr77275 8 46638473 to 46638491 18 + TSS region transcription start site region 77275
Gm31111 8 46668942 to 46678998 10056 - lncRNA gene predicted gene, 31111
Cpgi20320 8 46686889 to 46687217 328 CpG island CpG island 20320
Gm16675 8 46730970 to 46739515 8545 - bidirectional promoter lncRNA gene predicted gene, 16675
Tssr81211 8 46735551 to 46735560 9 - TSS region transcription start site region 81211
Cpgi20321 8 46739126 to 46739859 733 CpG island CpG island 20321
Tssr81212 8 46739453 to 46739514 61 - TSS region transcription start site region 81212
Irf2 8 46739745 to 46847458 107713 + protein coding gene interferon regulatory factor 2
Tssr77276 8 46739753 to 46739791 38 + TSS region transcription start site region 77276
Tssr77277 8 46739812 to 46739824 12 + TSS region transcription start site region 77277
Tssr77278 8 46739841 to 46739846 5 + TSS region transcription start site region 77278
Tssr77279 8 46739849 to 46739871 22 + TSS region transcription start site region 77279
Tssr77280 8 46739876 to 46739885 9 + TSS region transcription start site region 77280
Cpgi20322 8 46740200 to 46741708 1508 CpG island CpG island 20322
Tssr77281 8 46740241 to 46740273 32 + TSS region transcription start site region 77281
Tssr77282 8 46740289 to 46740308 19 + TSS region transcription start site region 77282
Tssr77283 8 46745436 to 46745465 29 + TSS region transcription start site region 77283
Tssr77284 8 46749457 to 46749461 4 + TSS region transcription start site region 77284
Tssr77285 8 46750376 to 46750398 22 + TSS region transcription start site region 77285
Tssr77286 8 46752643 to 46752664 21 + TSS region transcription start site region 77286
Tssr77287 8 46755958 to 46755992 34 + TSS region transcription start site region 77287
Gm45479 8 46763251 to 46764973 1722 - antisense lncRNA gene predicted gene 45479
Tssr81213 8 46764995 to 46765025 30 - TSS region transcription start site region 81213
Tssr81214 8 46765058 to 46765063 5 - TSS region transcription start site region 81214
Tssr77288 8 46766704 to 46766707 3 + TSS region transcription start site region 77288
Gm31172 8 46770553 to 46770985 432 - antisense lncRNA gene predicted gene, 31172
Tssr81215 8 46773617 to 46773624 7 - TSS region transcription start site region 81215
Tssr77289 8 46788348 to 46788362 14 + TSS region transcription start site region 77289
Tssr77290 8 46791879 to 46791883 4 + TSS region transcription start site region 77290
Tssr77291 8 46791929 to 46791942 13 + TSS region transcription start site region 77291
Tssr77292 8 46793502 to 46793522 20 + TSS region transcription start site region 77292
Tssr77293 8 46795162 to 46795188 26 + TSS region transcription start site region 77293
D8Mit98 8 46801472 to 46801619 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 98
Tssr77294 8 46806469 to 46806482 13 + TSS region transcription start site region 77294
Tssr77295 8 46806496 to 46806512 16 + TSS region transcription start site region 77295
Tssr77296 8 46806518 to 46806538 20 + TSS region transcription start site region 77296
Tssr77297 8 46807232 to 46807243 11 + TSS region transcription start site region 77297
Tssr77298 8 46814152 to 46814162 10 + TSS region transcription start site region 77298
Tssr77299 8 46818812 to 46818850 38 + TSS region transcription start site region 77299
Gm39170 8 46826701 to 46829108 2407 - lncRNA gene predicted gene, 39170
Tssr81216 8 46828480 to 46828493 13 - TSS region transcription start site region 81216
Gm45481 8 46833036 to 46833912 876 - unclassified gene predicted gene 45481
Tssr77300 8 46834138 to 46834155 17 + TSS region transcription start site region 77300
Tssr77301 8 46837564 to 46837577 13 + TSS region transcription start site region 77301
Tssr77302 8 46837729 to 46837740 11 + TSS region transcription start site region 77302
Tssr77303 8 46843114 to 46843126 12 + TSS region transcription start site region 77303
Tssr77304 8 46844806 to 46844847 41 + TSS region transcription start site region 77304
Tssr77305 8 46846122 to 46846133 11 + TSS region transcription start site region 77305
Tssr77306 8 46846427 to 46846438 11 + TSS region transcription start site region 77306
Tssr77307 8 46846458 to 46846470 12 + TSS region transcription start site region 77307
Tssr77308 8 46846497 to 46846521 24 + TSS region transcription start site region 77308
Tssr77309 8 46846539 to 46846555 16 + TSS region transcription start site region 77309
Tssr77310 8 46846560 to 46846575 15 + TSS region transcription start site region 77310
Tssr77311 8 46846616 to 46846627 11 + TSS region transcription start site region 77311
Tssr77312 8 46846635 to 46846649 14 + TSS region transcription start site region 77312
Tssr77313 8 46846746 to 46846767 21 + TSS region transcription start site region 77313
Tssr77314 8 46846775 to 46846798 23 + TSS region transcription start site region 77314
Tssr77315 8 46847202 to 46847213 11 + TSS region transcription start site region 77315
Tssr77316 8 46851894 to 46851921 27 + TSS region transcription start site region 77316
Tssr77317 8 46852656 to 46852662 6 + TSS region transcription start site region 77317
Tssr77318 8 46852667 to 46852678 11 + TSS region transcription start site region 77318
Tssr77319 8 46852692 to 46852703 11 + TSS region transcription start site region 77319
Tssr77320 8 46852735 to 46852744 9 + TSS region transcription start site region 77320
Tssr77321 8 46852766 to 46852782 16 + TSS region transcription start site region 77321
Tssr81217 8 46868318 to 46868329 11 - TSS region transcription start site region 81217
Tssr77322 8 46868457 to 46868496 39 + TSS region transcription start site region 77322
Tssr77323 8 46887563 to 46887579 16 + TSS region transcription start site region 77323
Tssr77324 8 46890497 to 46890524 27 + TSS region transcription start site region 77324
Tssr77325 8 46890529 to 46890569 40 + TSS region transcription start site region 77325
Tssr77326 8 46921854 to 46921880 26 + TSS region transcription start site region 77326
Tssr77327 8 46934477 to 46934514 37 + TSS region transcription start site region 77327
Tssr81218 8 46941285 to 46941321 36 - TSS region transcription start site region 81218
1700011L03Rik 8 46946795 to 46948799 2004 - lincRNA gene RIKEN cDNA 1700011L03 gene
Cpgi20323 8 46965909 to 46966103 194 CpG island CpG island 20323
Tssr77328 8 46986883 to 46986891 8 + TSS region transcription start site region 77328
Enpp6 8 46986887 to 47096762 109875 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 6
Tssr77329 8 46986898 to 46986910 12 + TSS region transcription start site region 77329
Tssr77330 8 46986913 to 46986962 49 + TSS region transcription start site region 77330
Gm45600 8 46994795 to 47014177 19382 - antisense lncRNA gene predicted gene 45600
D8Dcr15 8 46999407 to 46999502 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 15
4930579M01Rik 8 47026805 to 47038177 11372 - antisense lncRNA gene RIKEN cDNA 4930579M01 gene
Gm31231 8 47075018 to 47082406 7388 - lncRNA gene predicted gene, 31231
Tssr77331 8 47093757 to 47093761 4 + TSS region transcription start site region 77331
Tssr77332 8 47094807 to 47094816 9 + TSS region transcription start site region 77332
E330018M18Rik 8 47135651 to 47163704 28053 + lincRNA gene RIKEN cDNA E330018M18 gene