Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:46513757-47673761

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
Acsl1 8 46471037 to 46536051 65014 + protein coding gene acyl-CoA synthetase long-chain family member 1
Tssr77238 8 46518441 to 46518467 26 + TSS region transcription start site region 77238
Tssr77239 8 46519221 to 46519232 11 + TSS region transcription start site region 77239
Tssr77240 8 46521341 to 46521353 12 + TSS region transcription start site region 77240
Tssr77241 8 46521494 to 46521504 10 + TSS region transcription start site region 77241
Tssr77242 8 46521562 to 46521582 20 + TSS region transcription start site region 77242
Tssr77243 8 46521600 to 46521605 5 + TSS region transcription start site region 77243
Tssr77244 8 46521626 to 46521652 26 + TSS region transcription start site region 77244
Tssr77245 8 46521658 to 46521665 7 + TSS region transcription start site region 77245
Tssr77246 8 46521671 to 46521686 15 + TSS region transcription start site region 77246
Tssr77247 8 46521695 to 46521709 14 + TSS region transcription start site region 77247
Tssr77248 8 46521759 to 46521767 8 + TSS region transcription start site region 77248
Tssr77249 8 46521793 to 46521804 11 + TSS region transcription start site region 77249
Tssr77250 8 46521817 to 46521828 11 + TSS region transcription start site region 77250
Tssr77251 8 46521885 to 46521896 11 + TSS region transcription start site region 77251
Tssr77252 8 46526453 to 46526493 40 + TSS region transcription start site region 77252
Tssr77253 8 46527199 to 46527245 46 + TSS region transcription start site region 77253
Tssr77254 8 46528567 to 46528626 59 + TSS region transcription start site region 77254
Tssr77255 8 46530376 to 46530405 29 + TSS region transcription start site region 77255
Tssr77256 8 46530979 to 46530992 13 + TSS region transcription start site region 77256
Tssr77257 8 46534252 to 46534276 24 + TSS region transcription start site region 77257
Tssr81208 8 46534491 to 46534511 20 - TSS region transcription start site region 81208
Tssr77258 8 46534574 to 46534600 26 + TSS region transcription start site region 77258
Tssr77259 8 46534609 to 46534622 13 + TSS region transcription start site region 77259
Tssr77260 8 46534629 to 46534645 16 + TSS region transcription start site region 77260
Tssr77261 8 46534685 to 46534696 11 + TSS region transcription start site region 77261
Tssr77262 8 46534724 to 46534736 12 + TSS region transcription start site region 77262
Tssr77263 8 46534740 to 46534751 11 + TSS region transcription start site region 77263
Tssr77264 8 46534814 to 46534831 17 + TSS region transcription start site region 77264
Tssr77265 8 46534964 to 46535002 38 + TSS region transcription start site region 77265
Tssr77266 8 46535162 to 46535173 11 + TSS region transcription start site region 77266
Tssr77267 8 46535202 to 46535222 20 + TSS region transcription start site region 77267
Tssr77268 8 46535643 to 46535656 13 + TSS region transcription start site region 77268
Tssr77269 8 46535677 to 46535689 12 + TSS region transcription start site region 77269
Tssr77270 8 46535729 to 46535750 21 + TSS region transcription start site region 77270
Cpgi20318 8 46551601 to 46552615 1014 CpG island CpG island 20318
Tssr81209 8 46551727 to 46551742 15 - TSS region transcription start site region 81209
Tssr77271 8 46552024 to 46552079 55 + TSS region transcription start site region 77271
Cenpu 8 46552028 to 46580007 27979 + protein coding gene centromere protein U
Primpol 8 46575594 to 46617212 41618 - protein coding gene primase and polymerase (DNA-directed)
Gm45607 8 46604749 to 46605963 1214 + antisense lncRNA gene predicted gene 45607
Cpgi20319 8 46616697 to 46618001 1304 CpG island CpG island 20319
Tssr81210 8 46617167 to 46617225 58 - TSS region transcription start site region 81210
Casp3 8 46617291 to 46639689 22398 + protein coding gene caspase 3
Tssr77272 8 46617383 to 46617385 2 + TSS region transcription start site region 77272
Tssr77273 8 46617389 to 46617417 28 + TSS region transcription start site region 77273
Tssr77274 8 46617426 to 46617446 20 + TSS region transcription start site region 77274
Tssr77275 8 46638473 to 46638491 18 + TSS region transcription start site region 77275
Gm31111 8 46668942 to 46678998 10056 - lncRNA gene predicted gene, 31111
Cpgi20320 8 46686889 to 46687217 328 CpG island CpG island 20320
Gm16675 8 46730970 to 46739515 8545 - bidirectional promoter lncRNA gene predicted gene, 16675
Tssr81211 8 46735551 to 46735560 9 - TSS region transcription start site region 81211
Cpgi20321 8 46739126 to 46739859 733 CpG island CpG island 20321
Tssr81212 8 46739453 to 46739514 61 - TSS region transcription start site region 81212
Irf2 8 46739745 to 46847458 107713 + protein coding gene interferon regulatory factor 2
Tssr77276 8 46739753 to 46739791 38 + TSS region transcription start site region 77276
Tssr77277 8 46739812 to 46739824 12 + TSS region transcription start site region 77277
Tssr77278 8 46739841 to 46739846 5 + TSS region transcription start site region 77278
Tssr77279 8 46739849 to 46739871 22 + TSS region transcription start site region 77279
Tssr77280 8 46739876 to 46739885 9 + TSS region transcription start site region 77280
Cpgi20322 8 46740200 to 46741708 1508 CpG island CpG island 20322
Tssr77281 8 46740241 to 46740273 32 + TSS region transcription start site region 77281
Tssr77282 8 46740289 to 46740308 19 + TSS region transcription start site region 77282
Tssr77283 8 46745436 to 46745465 29 + TSS region transcription start site region 77283
Tssr77284 8 46749457 to 46749461 4 + TSS region transcription start site region 77284
Tssr77285 8 46750376 to 46750398 22 + TSS region transcription start site region 77285
Tssr77286 8 46752643 to 46752664 21 + TSS region transcription start site region 77286
Tssr77287 8 46755958 to 46755992 34 + TSS region transcription start site region 77287
Gm45479 8 46763251 to 46764973 1722 - antisense lncRNA gene predicted gene 45479
Tssr81213 8 46764995 to 46765025 30 - TSS region transcription start site region 81213
Tssr81214 8 46765058 to 46765063 5 - TSS region transcription start site region 81214
Tssr77288 8 46766704 to 46766707 3 + TSS region transcription start site region 77288
Gm31172 8 46770553 to 46770985 432 - antisense lncRNA gene predicted gene, 31172
Tssr81215 8 46773617 to 46773624 7 - TSS region transcription start site region 81215
Tssr77289 8 46788348 to 46788362 14 + TSS region transcription start site region 77289
Tssr77290 8 46791879 to 46791883 4 + TSS region transcription start site region 77290
Tssr77291 8 46791929 to 46791942 13 + TSS region transcription start site region 77291
Tssr77292 8 46793502 to 46793522 20 + TSS region transcription start site region 77292
Tssr77293 8 46795162 to 46795188 26 + TSS region transcription start site region 77293
D8Mit98 8 46801472 to 46801619 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 98
Tssr77294 8 46806469 to 46806482 13 + TSS region transcription start site region 77294
Tssr77295 8 46806496 to 46806512 16 + TSS region transcription start site region 77295
Tssr77296 8 46806518 to 46806538 20 + TSS region transcription start site region 77296
Tssr77297 8 46807232 to 46807243 11 + TSS region transcription start site region 77297
Tssr77298 8 46814152 to 46814162 10 + TSS region transcription start site region 77298
Tssr77299 8 46818812 to 46818850 38 + TSS region transcription start site region 77299
Gm39170 8 46826701 to 46829108 2407 - lncRNA gene predicted gene, 39170
Tssr81216 8 46828480 to 46828493 13 - TSS region transcription start site region 81216
Gm45481 8 46833036 to 46833912 876 - unclassified gene predicted gene 45481
Tssr77300 8 46834138 to 46834155 17 + TSS region transcription start site region 77300
Tssr77301 8 46837564 to 46837577 13 + TSS region transcription start site region 77301
Tssr77302 8 46837729 to 46837740 11 + TSS region transcription start site region 77302
Tssr77303 8 46843114 to 46843126 12 + TSS region transcription start site region 77303
Tssr77304 8 46844806 to 46844847 41 + TSS region transcription start site region 77304
Tssr77305 8 46846122 to 46846133 11 + TSS region transcription start site region 77305
Tssr77306 8 46846427 to 46846438 11 + TSS region transcription start site region 77306
Tssr77307 8 46846458 to 46846470 12 + TSS region transcription start site region 77307
Tssr77308 8 46846497 to 46846521 24 + TSS region transcription start site region 77308
Tssr77309 8 46846539 to 46846555 16 + TSS region transcription start site region 77309
Tssr77310 8 46846560 to 46846575 15 + TSS region transcription start site region 77310
Tssr77311 8 46846616 to 46846627 11 + TSS region transcription start site region 77311
Tssr77312 8 46846635 to 46846649 14 + TSS region transcription start site region 77312
Tssr77313 8 46846746 to 46846767 21 + TSS region transcription start site region 77313
Tssr77314 8 46846775 to 46846798 23 + TSS region transcription start site region 77314
Tssr77315 8 46847202 to 46847213 11 + TSS region transcription start site region 77315
Tssr77316 8 46851894 to 46851921 27 + TSS region transcription start site region 77316
Tssr77317 8 46852656 to 46852662 6 + TSS region transcription start site region 77317
Tssr77318 8 46852667 to 46852678 11 + TSS region transcription start site region 77318
Tssr77319 8 46852692 to 46852703 11 + TSS region transcription start site region 77319
Tssr77320 8 46852735 to 46852744 9 + TSS region transcription start site region 77320
Tssr77321 8 46852766 to 46852782 16 + TSS region transcription start site region 77321
Tssr81217 8 46868318 to 46868329 11 - TSS region transcription start site region 81217
Tssr77322 8 46868457 to 46868496 39 + TSS region transcription start site region 77322
Tssr77323 8 46887563 to 46887579 16 + TSS region transcription start site region 77323
Tssr77324 8 46890497 to 46890524 27 + TSS region transcription start site region 77324
Tssr77325 8 46890529 to 46890569 40 + TSS region transcription start site region 77325
Tssr77326 8 46921854 to 46921880 26 + TSS region transcription start site region 77326
Tssr77327 8 46934477 to 46934514 37 + TSS region transcription start site region 77327
Tssr81218 8 46941285 to 46941321 36 - TSS region transcription start site region 81218
1700011L03Rik 8 46946795 to 46948799 2004 - lincRNA gene RIKEN cDNA 1700011L03 gene
Cpgi20323 8 46965909 to 46966103 194 CpG island CpG island 20323
Tssr77328 8 46986883 to 46986891 8 + TSS region transcription start site region 77328
Enpp6 8 46986887 to 47096762 109875 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 6
Tssr77329 8 46986898 to 46986910 12 + TSS region transcription start site region 77329
Tssr77330 8 46986913 to 46986962 49 + TSS region transcription start site region 77330
Gm45600 8 46994795 to 47014177 19382 - antisense lncRNA gene predicted gene 45600
D8Dcr15 8 46999407 to 46999502 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 15
4930579M01Rik 8 47026805 to 47038177 11372 - antisense lncRNA gene RIKEN cDNA 4930579M01 gene
Gm31231 8 47075018 to 47082406 7388 - lncRNA gene predicted gene, 31231
Tssr77331 8 47093757 to 47093761 4 + TSS region transcription start site region 77331
Tssr77332 8 47094807 to 47094816 9 + TSS region transcription start site region 77332
E330018M18Rik 8 47135651 to 47163704 28053 + lincRNA gene RIKEN cDNA E330018M18 gene
Tssr81219 8 47166085 to 47166087 2 - TSS region transcription start site region 81219
Stox2 8 47180048 to 47412459 232411 - protein coding gene storkhead box 2
Cpgi20324 8 47193113 to 47193565 452 CpG island CpG island 20324
Tssr81220 8 47220619 to 47220630 11 - TSS region transcription start site region 81220
Tssr77333 8 47220752 to 47220763 11 + TSS region transcription start site region 77333
Gm45537 8 47224459 to 47227166 2707 - unclassified gene predicted gene 45537
D8Mit126 8 47246020 to 47246166 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 126
Tssr2562 8 47249299 to 47249300 1 - TSS region transcription start site region 2562
Tssr81221 8 47254760 to 47254773 13 - TSS region transcription start site region 81221
Tssr81222 8 47267938 to 47267943 5 - TSS region transcription start site region 81222
Cpgi20325 8 47287224 to 47287462 238 CpG island CpG island 20325
Cpgi20326 8 47287598 to 47289827 2229 CpG island CpG island 20326
Tssr81223 8 47288130 to 47288160 30 - TSS region transcription start site region 81223
Tssr81224 8 47288284 to 47288295 11 - TSS region transcription start site region 81224
Tssr77334 8 47288403 to 47288419 16 + TSS region transcription start site region 77334
Tssr81225 8 47288447 to 47288476 29 - TSS region transcription start site region 81225
Tssr81226 8 47289323 to 47289349 26 - TSS region transcription start site region 81226
Tssr81227 8 47289354 to 47289384 30 - TSS region transcription start site region 81227
Tssr81228 8 47289394 to 47289411 17 - TSS region transcription start site region 81228
Tssr81229 8 47289413 to 47289461 48 - TSS region transcription start site region 81229
Tssr2563 8 47289640 to 47289648 8 - TSS region transcription start site region 2563
4930448N21Rik 8 47294271 to 47446361 152090 unclassified gene RIKEN cDNA 4930448N21 gene
Tssr81230 8 47323166 to 47323175 9 - TSS region transcription start site region 81230
Gm39171 8 47323514 to 47324515 1001 + lncRNA gene predicted gene, 39171
Tssr77335 8 47334457 to 47334471 14 + TSS region transcription start site region 77335
Tssr81231 8 47352352 to 47352367 15 - TSS region transcription start site region 81231
Tssr81232 8 47352486 to 47352501 15 - TSS region transcription start site region 81232
Cpgi20327 8 47392420 to 47392580 160 CpG island CpG island 20327
Cpgi20328 8 47412357 to 47414093 1736 CpG island CpG island 20328
Gm10083 8 47412408 to 47414164 1756 + protein coding gene predicted gene 10083
Tssr81233 8 47413646 to 47413686 40 - TSS region transcription start site region 81233
Tssr81234 8 47413779 to 47413826 47 - TSS region transcription start site region 81234
Tssr81235 8 47413833 to 47413855 22 - TSS region transcription start site region 81235
Tssr2564 8 47425613 to 47425615 2 + TSS region transcription start site region 2564
Gm22857 8 47440418 to 47440551 133 + snoRNA gene predicted gene, 22857
Trappc11 8 47490128 to 47533470 43342 - protein coding gene trafficking protein particle complex 11
Cpgi20329 8 47533080 to 47534254 1174 CpG island CpG island 20329
Tssr81236 8 47533405 to 47533412 7 - TSS region transcription start site region 81236
Tssr81237 8 47533422 to 47533436 14 - TSS region transcription start site region 81237
Tssr81238 8 47533439 to 47533477 38 - TSS region transcription start site region 81238
Tssr77336 8 47533639 to 47533709 70 + TSS region transcription start site region 77336
Rwdd4a 8 47533645 to 47552837 19192 + protein coding gene RWD domain containing 4A
Gm45576 8 47557529 to 47567896 10367 + lincRNA gene predicted gene 45576
Gm27409 8 47591668 to 47591747 79 + miRNA gene predicted gene, 27409
Gm39172 8 47594821 to 47595550 729 + lncRNA gene predicted gene, 39172
Gm45575 8 47627553 to 47628100 547 - pseudogene predicted gene 45575
Gm8623 8 47632329 to 47632764 435 - pseudogene predicted gene 8623
Tssr81239 8 47632810 to 47632820 10 - TSS region transcription start site region 81239
Cpgi20330 8 47646679 to 47647240 561 CpG island CpG island 20330
Ing2 8 47667178 to 47675159 7981 - protein coding gene inhibitor of growth family, member 2
Cpgi20331 8 47673467 to 47676295 2828 CpG island CpG island 20331
Tssr81240 8 47673472 to 47673483 11 - TSS region transcription start site region 81240