Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:46508942-46838998

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsl1 8 46471037 to 46536051 65014 + protein coding gene acyl-CoA synthetase long-chain family member 1
Tssr77231 8 46511398 to 46511416 18 + TSS region transcription start site region 77231
Tssr77232 8 46511536 to 46511547 11 + TSS region transcription start site region 77232
Tssr77233 8 46511759 to 46511771 12 + TSS region transcription start site region 77233
Tssr77234 8 46512951 to 46512954 3 + TSS region transcription start site region 77234
Tssr77235 8 46513290 to 46513303 13 + TSS region transcription start site region 77235
Tssr77236 8 46513309 to 46513342 33 + TSS region transcription start site region 77236
Tssr77237 8 46513345 to 46513364 19 + TSS region transcription start site region 77237
Tssr77238 8 46518441 to 46518467 26 + TSS region transcription start site region 77238
Tssr77239 8 46519221 to 46519232 11 + TSS region transcription start site region 77239
Tssr77240 8 46521341 to 46521353 12 + TSS region transcription start site region 77240
Tssr77241 8 46521494 to 46521504 10 + TSS region transcription start site region 77241
Tssr77242 8 46521562 to 46521582 20 + TSS region transcription start site region 77242
Tssr77243 8 46521600 to 46521605 5 + TSS region transcription start site region 77243
Tssr77244 8 46521626 to 46521652 26 + TSS region transcription start site region 77244
Tssr77245 8 46521658 to 46521665 7 + TSS region transcription start site region 77245
Tssr77246 8 46521671 to 46521686 15 + TSS region transcription start site region 77246
Tssr77247 8 46521695 to 46521709 14 + TSS region transcription start site region 77247
Tssr77248 8 46521759 to 46521767 8 + TSS region transcription start site region 77248
Tssr77249 8 46521793 to 46521804 11 + TSS region transcription start site region 77249
Tssr77250 8 46521817 to 46521828 11 + TSS region transcription start site region 77250
Tssr77251 8 46521885 to 46521896 11 + TSS region transcription start site region 77251
Tssr77252 8 46526453 to 46526493 40 + TSS region transcription start site region 77252
Tssr77253 8 46527199 to 46527245 46 + TSS region transcription start site region 77253
Tssr77254 8 46528567 to 46528626 59 + TSS region transcription start site region 77254
Tssr77255 8 46530376 to 46530405 29 + TSS region transcription start site region 77255
Tssr77256 8 46530979 to 46530992 13 + TSS region transcription start site region 77256
Tssr77257 8 46534252 to 46534276 24 + TSS region transcription start site region 77257
Tssr81208 8 46534491 to 46534511 20 - TSS region transcription start site region 81208
Tssr77258 8 46534574 to 46534600 26 + TSS region transcription start site region 77258
Tssr77259 8 46534609 to 46534622 13 + TSS region transcription start site region 77259
Tssr77260 8 46534629 to 46534645 16 + TSS region transcription start site region 77260
Tssr77261 8 46534685 to 46534696 11 + TSS region transcription start site region 77261
Tssr77262 8 46534724 to 46534736 12 + TSS region transcription start site region 77262
Tssr77263 8 46534740 to 46534751 11 + TSS region transcription start site region 77263
Tssr77264 8 46534814 to 46534831 17 + TSS region transcription start site region 77264
Tssr77265 8 46534964 to 46535002 38 + TSS region transcription start site region 77265
Tssr77266 8 46535162 to 46535173 11 + TSS region transcription start site region 77266
Tssr77267 8 46535202 to 46535222 20 + TSS region transcription start site region 77267
Tssr77268 8 46535643 to 46535656 13 + TSS region transcription start site region 77268
Tssr77269 8 46535677 to 46535689 12 + TSS region transcription start site region 77269
Tssr77270 8 46535729 to 46535750 21 + TSS region transcription start site region 77270
Cpgi20318 8 46551601 to 46552615 1014 CpG island CpG island 20318
Tssr81209 8 46551727 to 46551742 15 - TSS region transcription start site region 81209
Tssr77271 8 46552024 to 46552079 55 + TSS region transcription start site region 77271
Cenpu 8 46552028 to 46580007 27979 + protein coding gene centromere protein U
Primpol 8 46575594 to 46617212 41618 - protein coding gene primase and polymerase (DNA-directed)
Gm45607 8 46604749 to 46605963 1214 + antisense lncRNA gene predicted gene 45607
Cpgi20319 8 46616697 to 46618001 1304 CpG island CpG island 20319
Tssr81210 8 46617167 to 46617225 58 - TSS region transcription start site region 81210
Casp3 8 46617291 to 46639689 22398 + protein coding gene caspase 3
Tssr77272 8 46617383 to 46617385 2 + TSS region transcription start site region 77272
Tssr77273 8 46617389 to 46617417 28 + TSS region transcription start site region 77273
Tssr77274 8 46617426 to 46617446 20 + TSS region transcription start site region 77274
Tssr77275 8 46638473 to 46638491 18 + TSS region transcription start site region 77275
Gm31111 8 46668942 to 46678998 10056 - lncRNA gene predicted gene, 31111
Cpgi20320 8 46686889 to 46687217 328 CpG island CpG island 20320
Gm16675 8 46730970 to 46739515 8545 - bidirectional promoter lncRNA gene predicted gene, 16675
Tssr81211 8 46735551 to 46735560 9 - TSS region transcription start site region 81211
Cpgi20321 8 46739126 to 46739859 733 CpG island CpG island 20321
Tssr81212 8 46739453 to 46739514 61 - TSS region transcription start site region 81212
Irf2 8 46739745 to 46847458 107713 + protein coding gene interferon regulatory factor 2
Tssr77276 8 46739753 to 46739791 38 + TSS region transcription start site region 77276
Tssr77277 8 46739812 to 46739824 12 + TSS region transcription start site region 77277
Tssr77278 8 46739841 to 46739846 5 + TSS region transcription start site region 77278
Tssr77279 8 46739849 to 46739871 22 + TSS region transcription start site region 77279
Tssr77280 8 46739876 to 46739885 9 + TSS region transcription start site region 77280
Cpgi20322 8 46740200 to 46741708 1508 CpG island CpG island 20322
Tssr77281 8 46740241 to 46740273 32 + TSS region transcription start site region 77281
Tssr77282 8 46740289 to 46740308 19 + TSS region transcription start site region 77282
Tssr77283 8 46745436 to 46745465 29 + TSS region transcription start site region 77283
Tssr77284 8 46749457 to 46749461 4 + TSS region transcription start site region 77284
Tssr77285 8 46750376 to 46750398 22 + TSS region transcription start site region 77285
Tssr77286 8 46752643 to 46752664 21 + TSS region transcription start site region 77286
Tssr77287 8 46755958 to 46755992 34 + TSS region transcription start site region 77287
Gm45479 8 46763251 to 46764973 1722 - antisense lncRNA gene predicted gene 45479
Tssr81213 8 46764995 to 46765025 30 - TSS region transcription start site region 81213
Tssr81214 8 46765058 to 46765063 5 - TSS region transcription start site region 81214
Tssr77288 8 46766704 to 46766707 3 + TSS region transcription start site region 77288
Gm31172 8 46770553 to 46770985 432 - antisense lncRNA gene predicted gene, 31172
Tssr81215 8 46773617 to 46773624 7 - TSS region transcription start site region 81215
Tssr77289 8 46788348 to 46788362 14 + TSS region transcription start site region 77289
Tssr77290 8 46791879 to 46791883 4 + TSS region transcription start site region 77290
Tssr77291 8 46791929 to 46791942 13 + TSS region transcription start site region 77291
Tssr77292 8 46793502 to 46793522 20 + TSS region transcription start site region 77292
Tssr77293 8 46795162 to 46795188 26 + TSS region transcription start site region 77293
D8Mit98 8 46801472 to 46801619 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 98
Tssr77294 8 46806469 to 46806482 13 + TSS region transcription start site region 77294
Tssr77295 8 46806496 to 46806512 16 + TSS region transcription start site region 77295
Tssr77296 8 46806518 to 46806538 20 + TSS region transcription start site region 77296
Tssr77297 8 46807232 to 46807243 11 + TSS region transcription start site region 77297
Tssr77298 8 46814152 to 46814162 10 + TSS region transcription start site region 77298
Tssr77299 8 46818812 to 46818850 38 + TSS region transcription start site region 77299
Gm39170 8 46826701 to 46829108 2407 - lncRNA gene predicted gene, 39170
Tssr81216 8 46828480 to 46828493 13 - TSS region transcription start site region 81216
Gm45481 8 46833036 to 46833912 876 - unclassified gene predicted gene 45481
Tssr77300 8 46834138 to 46834155 17 + TSS region transcription start site region 77300
Tssr77301 8 46837564 to 46837577 13 + TSS region transcription start site region 77301
Tssr77302 8 46837729 to 46837740 11 + TSS region transcription start site region 77302