Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:45857643-47647664

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316 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
Gm25309 8 45864478 to 45864603 125 - snRNA gene predicted gene, 25309
Cpgi20305 8 45885340 to 45885653 313 CpG island CpG island 20305
Tssr77172 8 45885364 to 45885387 23 + TSS region transcription start site region 77172
Pdlim3 8 45885461 to 45919548 34087 + protein coding gene PDZ and LIM domain 3
Tssr77173 8 45885479 to 45885494 15 + TSS region transcription start site region 77173
Tssr77174 8 45885529 to 45885540 11 + TSS region transcription start site region 77174
D8Mit175 8 45885965 to 45886092 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 175
Cpgi20306 8 45918836 to 45919047 211 CpG island CpG island 20306
Gm45512 8 45920872 to 45922424 1552 + unclassified gene predicted gene 45512
Tssr77175 8 45934610 to 45934661 51 + TSS region transcription start site region 77175
Ccdc110 8 45934619 to 45944145 9526 + protein coding gene coiled-coil domain containing 110
Cpgi20307 8 45934632 to 45935090 458 CpG island CpG island 20307
Gm15878 8 45949612 to 45949917 305 + pseudogene predicted gene 15878
1700029J07Rik 8 45953606 to 45975252 21646 - protein coding gene RIKEN cDNA 1700029J07 gene
Cpgi20308 8 45975043 to 45975789 746 CpG island CpG island 20308
Tssr81185 8 45975224 to 45975281 57 - TSS region transcription start site region 81185
Tssr77176 8 45975514 to 45975558 44 + TSS region transcription start site region 77176
Ufsp2 8 45975528 to 45996958 21430 + protein coding gene UFM1-specific peptidase 2
Tssr77177 8 45992652 to 45992653 1 + TSS region transcription start site region 77177
Ankrd37 8 45996902 to 46000823 3921 - protein coding gene ankyrin repeat domain 37
Tssr77178 8 45999282 to 45999296 14 + TSS region transcription start site region 77178
Tssr77179 8 45999297 to 45999313 16 + TSS region transcription start site region 77179
Tssr77180 8 45999317 to 45999324 7 + TSS region transcription start site region 77180
Cpgi20309 8 45999684 to 46000566 882 CpG island CpG island 20309
Tssr81186 8 45999709 to 45999713 4 - TSS region transcription start site region 81186
Tssr81187 8 45999860 to 45999873 13 - TSS region transcription start site region 81187
Tssr81188 8 45999896 to 45999904 8 - TSS region transcription start site region 81188
D8Dcr14 8 46001614 to 46001714 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 14
Tssr77181 8 46010596 to 46010635 39 + TSS region transcription start site region 77181
Lrp2bp 8 46010598 to 46029478 18880 + protein coding gene Lrp2 binding protein
Snx25 8 46033261 to 46152159 118898 - protein coding gene sorting nexin 25
Tssr81189 8 46097784 to 46097788 4 - TSS region transcription start site region 81189
Gm23030 8 46107259 to 46107531 272 + unclassified non-coding RNA gene predicted gene, 23030
Cpgi20310 8 46151160 to 46152995 1835 CpG island CpG island 20310
Tssr77182 8 46151749 to 46151781 32 + TSS region transcription start site region 77182
Cfap97 8 46151777 to 46195590 43813 + protein coding gene cilia and flagella associated protein 97
Tssr77183 8 46151856 to 46151865 9 + TSS region transcription start site region 77183
Tssr81190 8 46152412 to 46152477 65 - TSS region transcription start site region 81190
Gm15634 8 46152610 to 46156100 3490 + sense intronic lncRNA gene predicted gene 15634
Tssr77184 8 46152634 to 46152648 14 + TSS region transcription start site region 77184
Gm45693 8 46162090 to 46163246 1156 + unclassified gene predicted gene 45693
Tssr77185 8 46162255 to 46162262 7 + TSS region transcription start site region 77185
Tssr77186 8 46162265 to 46162274 9 + TSS region transcription start site region 77186
Tssr77187 8 46162277 to 46162286 9 + TSS region transcription start site region 77187
Cpgi20311 8 46163224 to 46164168 944 CpG island CpG island 20311
Tssr81191 8 46163535 to 46163569 34 - TSS region transcription start site region 81191
Tssr77188 8 46163675 to 46163729 54 + TSS region transcription start site region 77188
Tssr77189 8 46163733 to 46163750 17 + TSS region transcription start site region 77189
Tssr77190 8 46163765 to 46163778 13 + TSS region transcription start site region 77190
Tssr77191 8 46163784 to 46163800 16 + TSS region transcription start site region 77191
Tssr77192 8 46163814 to 46163842 28 + TSS region transcription start site region 77192
Tssr77193 8 46194193 to 46194205 12 + TSS region transcription start site region 77193
Slc25a4 8 46207339 to 46211009 3670 - protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
Tssr77194 8 46207544 to 46207599 55 + TSS region transcription start site region 77194
Tssr81192 8 46207553 to 46207573 20 - TSS region transcription start site region 81192
Tssr81193 8 46207594 to 46207626 32 - TSS region transcription start site region 81193
Tssr81194 8 46208438 to 46208469 31 - TSS region transcription start site region 81194
Cpgi20312 8 46208442 to 46208618 176 CpG island CpG island 20312
Tssr81195 8 46208517 to 46208543 26 - TSS region transcription start site region 81195
Tssr81196 8 46209056 to 46209122 66 - TSS region transcription start site region 81196
Tssr81197 8 46209138 to 46209157 19 - TSS region transcription start site region 81197
Tssr81198 8 46209239 to 46209258 19 - TSS region transcription start site region 81198
Cpgi20313 8 46210268 to 46211498 1230 CpG island CpG island 20313
Tssr81199 8 46210393 to 46210404 11 - TSS region transcription start site region 81199
Tssr81200 8 46211020 to 46211036 16 - TSS region transcription start site region 81200
Actg-ps1 8 46229011 to 46230128 1117 + pseudogene actin, gamma, pseudogene 1
Gm23812 8 46229794 to 46229877 83 + miRNA gene predicted gene, 23812
Cpgi20314 8 46252332 to 46252527 195 CpG island CpG island 20314
Gm10313 8 46254677 to 46255678 1001 - pseudogene predicted pseudogene 10313
Gm24669 8 46272051 to 46272147 96 + snRNA gene predicted gene, 24669
Gm8575 8 46279672 to 46280192 520 + pseudogene predicted gene 8575
Gm30880 8 46281945 to 46284669 2724 - lncRNA gene predicted gene, 30880
Helt 8 46292043 to 46294671 2628 - protein coding gene helt bHLH transcription factor
Cpgi20315 8 46292098 to 46292742 644 CpG island CpG island 20315
Cpgi20316 8 46293936 to 46294901 965 CpG island CpG island 20316
Tssr81201 8 46294592 to 46294601 9 - TSS region transcription start site region 81201
Gm39168 8 46301637 to 46325729 24092 + lincRNA gene predicted gene, 39168
Tssr77195 8 46310739 to 46310743 4 + TSS region transcription start site region 77195
Gm45255 8 46313801 to 46314611 810 + unclassified gene predicted gene 45255
Gm30931 8 46363251 to 46367204 3953 + lincRNA gene predicted gene, 30931
Gm45253 8 46372106 to 46385888 13782 - lincRNA gene predicted gene 45253
Tssr77196 8 46419701 to 46419707 6 + TSS region transcription start site region 77196
Tssr81202 8 46426341 to 46426382 41 - TSS region transcription start site region 81202
Tssr81203 8 46430155 to 46430175 20 - TSS region transcription start site region 81203
Tssr77197 8 46432851 to 46432860 9 + TSS region transcription start site region 77197
Tssr77198 8 46433016 to 46433027 11 + TSS region transcription start site region 77198
Gm45245 8 46451929 to 46452304 375 - pseudogene predicted gene 45245
Gm31050 8 46469991 to 46470951 960 - lncRNA gene predicted gene, 31050
Cpgi20317 8 46470628 to 46471810 1182 CpG island CpG island 20317
Acsl1 8 46471037 to 46536051 65014 + protein coding gene acyl-CoA synthetase long-chain family member 1
Tssr77199 8 46471048 to 46471078 30 + TSS region transcription start site region 77199
Tssr77200 8 46471081 to 46471109 28 + TSS region transcription start site region 77200
Tssr77201 8 46471169 to 46471186 17 + TSS region transcription start site region 77201
Gm45244 8 46471391 to 46473590 2199 - unclassified gene predicted gene 45244
Tssr81204 8 46471606 to 46471616 10 - TSS region transcription start site region 81204
Tssr81205 8 46471639 to 46471651 12 - TSS region transcription start site region 81205
Tssr77202 8 46471693 to 46471704 11 + TSS region transcription start site region 77202
Tssr2561 8 46471711 to 46471717 6 + TSS region transcription start site region 2561
Tssr77203 8 46471719 to 46471785 66 + TSS region transcription start site region 77203
Tssr77204 8 46471887 to 46471901 14 + TSS region transcription start site region 77204
Tssr77205 8 46471936 to 46471953 17 + TSS region transcription start site region 77205
Tssr77206 8 46472360 to 46472393 33 + TSS region transcription start site region 77206
Tssr77207 8 46472397 to 46472412 15 + TSS region transcription start site region 77207
Tssr81206 8 46472427 to 46472430 3 - TSS region transcription start site region 81206
Tssr77208 8 46474376 to 46474390 14 + TSS region transcription start site region 77208
Tssr77209 8 46476557 to 46476563 6 + TSS region transcription start site region 77209
Tssr77210 8 46478726 to 46478729 3 + TSS region transcription start site region 77210
Tssr77211 8 46488380 to 46488415 35 + TSS region transcription start site region 77211
Tssr77212 8 46488741 to 46488745 4 + TSS region transcription start site region 77212
Tssr77213 8 46490919 to 46490930 11 + TSS region transcription start site region 77213
Tssr77214 8 46490944 to 46490951 7 + TSS region transcription start site region 77214
Tssr77215 8 46490965 to 46490966 1 + TSS region transcription start site region 77215
Tssr77216 8 46490968 to 46490995 27 + TSS region transcription start site region 77216
Tssr77217 8 46491002 to 46491007 5 + TSS region transcription start site region 77217
Tssr77218 8 46491079 to 46491082 3 + TSS region transcription start site region 77218
Tssr77219 8 46491086 to 46491120 34 + TSS region transcription start site region 77219
Tssr77220 8 46491125 to 46491142 17 + TSS region transcription start site region 77220
Tssr77221 8 46492361 to 46492387 26 + TSS region transcription start site region 77221
Tssr77222 8 46492789 to 46492801 12 + TSS region transcription start site region 77222
Tssr77223 8 46492857 to 46492868 11 + TSS region transcription start site region 77223
Tssr77224 8 46492927 to 46492946 19 + TSS region transcription start site region 77224
Tssr77225 8 46492953 to 46492988 35 + TSS region transcription start site region 77225
Tssr81207 8 46502842 to 46502849 7 - TSS region transcription start site region 81207
Tssr77226 8 46503657 to 46503666 9 + TSS region transcription start site region 77226
Tssr77227 8 46505638 to 46505719 81 + TSS region transcription start site region 77227
Tssr77228 8 46506080 to 46506106 26 + TSS region transcription start site region 77228
Tssr77229 8 46506141 to 46506151 10 + TSS region transcription start site region 77229
Tssr77230 8 46507093 to 46507095 2 + TSS region transcription start site region 77230
Tssr77231 8 46511398 to 46511416 18 + TSS region transcription start site region 77231
Tssr77232 8 46511536 to 46511547 11 + TSS region transcription start site region 77232
Tssr77233 8 46511759 to 46511771 12 + TSS region transcription start site region 77233
Tssr77234 8 46512951 to 46512954 3 + TSS region transcription start site region 77234
Tssr77235 8 46513290 to 46513303 13 + TSS region transcription start site region 77235
Tssr77236 8 46513309 to 46513342 33 + TSS region transcription start site region 77236
Tssr77237 8 46513345 to 46513364 19 + TSS region transcription start site region 77237
Tssr77238 8 46518441 to 46518467 26 + TSS region transcription start site region 77238
Tssr77239 8 46519221 to 46519232 11 + TSS region transcription start site region 77239
Tssr77240 8 46521341 to 46521353 12 + TSS region transcription start site region 77240
Tssr77241 8 46521494 to 46521504 10 + TSS region transcription start site region 77241
Tssr77242 8 46521562 to 46521582 20 + TSS region transcription start site region 77242
Tssr77243 8 46521600 to 46521605 5 + TSS region transcription start site region 77243
Tssr77244 8 46521626 to 46521652 26 + TSS region transcription start site region 77244
Tssr77245 8 46521658 to 46521665 7 + TSS region transcription start site region 77245
Tssr77246 8 46521671 to 46521686 15 + TSS region transcription start site region 77246
Tssr77247 8 46521695 to 46521709 14 + TSS region transcription start site region 77247
Tssr77248 8 46521759 to 46521767 8 + TSS region transcription start site region 77248
Tssr77249 8 46521793 to 46521804 11 + TSS region transcription start site region 77249
Tssr77250 8 46521817 to 46521828 11 + TSS region transcription start site region 77250
Tssr77251 8 46521885 to 46521896 11 + TSS region transcription start site region 77251
Tssr77252 8 46526453 to 46526493 40 + TSS region transcription start site region 77252
Tssr77253 8 46527199 to 46527245 46 + TSS region transcription start site region 77253
Tssr77254 8 46528567 to 46528626 59 + TSS region transcription start site region 77254
Tssr77255 8 46530376 to 46530405 29 + TSS region transcription start site region 77255
Tssr77256 8 46530979 to 46530992 13 + TSS region transcription start site region 77256
Tssr77257 8 46534252 to 46534276 24 + TSS region transcription start site region 77257
Tssr81208 8 46534491 to 46534511 20 - TSS region transcription start site region 81208
Tssr77258 8 46534574 to 46534600 26 + TSS region transcription start site region 77258
Tssr77259 8 46534609 to 46534622 13 + TSS region transcription start site region 77259
Tssr77260 8 46534629 to 46534645 16 + TSS region transcription start site region 77260
Tssr77261 8 46534685 to 46534696 11 + TSS region transcription start site region 77261
Tssr77262 8 46534724 to 46534736 12 + TSS region transcription start site region 77262
Tssr77263 8 46534740 to 46534751 11 + TSS region transcription start site region 77263
Tssr77264 8 46534814 to 46534831 17 + TSS region transcription start site region 77264
Tssr77265 8 46534964 to 46535002 38 + TSS region transcription start site region 77265
Tssr77266 8 46535162 to 46535173 11 + TSS region transcription start site region 77266
Tssr77267 8 46535202 to 46535222 20 + TSS region transcription start site region 77267
Tssr77268 8 46535643 to 46535656 13 + TSS region transcription start site region 77268
Tssr77269 8 46535677 to 46535689 12 + TSS region transcription start site region 77269
Tssr77270 8 46535729 to 46535750 21 + TSS region transcription start site region 77270
Cpgi20318 8 46551601 to 46552615 1014 CpG island CpG island 20318
Tssr81209 8 46551727 to 46551742 15 - TSS region transcription start site region 81209
Tssr77271 8 46552024 to 46552079 55 + TSS region transcription start site region 77271
Cenpu 8 46552028 to 46580007 27979 + protein coding gene centromere protein U
Primpol 8 46575594 to 46617212 41618 - protein coding gene primase and polymerase (DNA-directed)
Gm45607 8 46604749 to 46605963 1214 + antisense lncRNA gene predicted gene 45607
Cpgi20319 8 46616697 to 46618001 1304 CpG island CpG island 20319
Tssr81210 8 46617167 to 46617225 58 - TSS region transcription start site region 81210
Casp3 8 46617291 to 46639689 22398 + protein coding gene caspase 3
Tssr77272 8 46617383 to 46617385 2 + TSS region transcription start site region 77272
Tssr77273 8 46617389 to 46617417 28 + TSS region transcription start site region 77273
Tssr77274 8 46617426 to 46617446 20 + TSS region transcription start site region 77274
Tssr77275 8 46638473 to 46638491 18 + TSS region transcription start site region 77275
Gm31111 8 46668942 to 46678998 10056 - lncRNA gene predicted gene, 31111
Cpgi20320 8 46686889 to 46687217 328 CpG island CpG island 20320
Gm16675 8 46730970 to 46739515 8545 - bidirectional promoter lncRNA gene predicted gene, 16675
Tssr81211 8 46735551 to 46735560 9 - TSS region transcription start site region 81211
Cpgi20321 8 46739126 to 46739859 733 CpG island CpG island 20321
Tssr81212 8 46739453 to 46739514 61 - TSS region transcription start site region 81212
Irf2 8 46739745 to 46847458 107713 + protein coding gene interferon regulatory factor 2
Tssr77276 8 46739753 to 46739791 38 + TSS region transcription start site region 77276
Tssr77277 8 46739812 to 46739824 12 + TSS region transcription start site region 77277
Tssr77278 8 46739841 to 46739846 5 + TSS region transcription start site region 77278
Tssr77279 8 46739849 to 46739871 22 + TSS region transcription start site region 77279
Tssr77280 8 46739876 to 46739885 9 + TSS region transcription start site region 77280
Cpgi20322 8 46740200 to 46741708 1508 CpG island CpG island 20322
Tssr77281 8 46740241 to 46740273 32 + TSS region transcription start site region 77281
Tssr77282 8 46740289 to 46740308 19 + TSS region transcription start site region 77282
Tssr77283 8 46745436 to 46745465 29 + TSS region transcription start site region 77283
Tssr77284 8 46749457 to 46749461 4 + TSS region transcription start site region 77284