Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:45521902-46475823

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sorbs2 8 45507788 to 45827906 320118 + protein coding gene sorbin and SH3 domain containing 2
Gm30759 8 45526389 to 45551328 24939 - lncRNA gene predicted gene, 30759
Gm45458 8 45539594 to 45540115 521 - unclassified gene predicted gene 45458
Tssr81182 8 45555732 to 45555735 3 - TSS region transcription start site region 81182
Tssr81183 8 45555737 to 45555745 8 - TSS region transcription start site region 81183
Gm16351 8 45579788 to 45599944 20156 - antisense lncRNA gene predicted gene 16351
Tssr77133 8 45579942 to 45579947 5 + TSS region transcription start site region 77133
Gm23604 8 45581616 to 45581747 131 - snoRNA gene predicted gene, 23604
Tssr77134 8 45627688 to 45627699 11 + TSS region transcription start site region 77134
Tssr77135 8 45627709 to 45627754 45 + TSS region transcription start site region 77135
Tssr77136 8 45627801 to 45627844 43 + TSS region transcription start site region 77136
Cpgi20303 8 45627824 to 45628160 336 CpG island CpG island 20303
Tssr77137 8 45627917 to 45627933 16 + TSS region transcription start site region 77137
Tssr77138 8 45627946 to 45627975 29 + TSS region transcription start site region 77138
Tssr77139 8 45627976 to 45628001 25 + TSS region transcription start site region 77139
Tssr77140 8 45628058 to 45628071 13 + TSS region transcription start site region 77140
Tssr77141 8 45628080 to 45628093 13 + TSS region transcription start site region 77141
Tssr77142 8 45628112 to 45628129 17 + TSS region transcription start site region 77142
Tssr77143 8 45628155 to 45628170 15 + TSS region transcription start site region 77143
Tssr77144 8 45628176 to 45628219 43 + TSS region transcription start site region 77144
Tssr81184 8 45630642 to 45630658 16 - TSS region transcription start site region 81184
Gm30635 8 45649946 to 45665137 15191 - lncRNA gene predicted gene, 30635
Tssr77145 8 45658273 to 45658298 25 + TSS region transcription start site region 77145
Tssr77146 8 45658299 to 45658308 9 + TSS region transcription start site region 77146
Tssr77147 8 45658309 to 45658323 14 + TSS region transcription start site region 77147
Tssr77148 8 45658324 to 45658338 14 + TSS region transcription start site region 77148
D8Mit297 8 45658458 to 45658559 101 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 297
Tssr77149 8 45658666 to 45658728 62 + TSS region transcription start site region 77149
Tssr77150 8 45658731 to 45658798 67 + TSS region transcription start site region 77150
Tssr77151 8 45658815 to 45658824 9 + TSS region transcription start site region 77151
Tssr77152 8 45658872 to 45658898 26 + TSS region transcription start site region 77152
Tssr77153 8 45658903 to 45658914 11 + TSS region transcription start site region 77153
D8Mit176 8 45666696 to 45666833 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 176
Tssr77154 8 45689982 to 45690000 18 + TSS region transcription start site region 77154
Tssr77155 8 45690101 to 45690112 11 + TSS region transcription start site region 77155
Tssr77156 8 45690121 to 45690144 23 + TSS region transcription start site region 77156
Tssr77157 8 45695379 to 45695394 15 + TSS region transcription start site region 77157
Tssr77158 8 45695469 to 45695483 14 + TSS region transcription start site region 77158
Tssr77159 8 45696414 to 45696418 4 + TSS region transcription start site region 77159
Sorbs2os 8 45723325 to 45819297 95972 - antisense lncRNA gene sorbin and SH3 domain containing 2, opposite strand
Tssr77160 8 45746617 to 45746628 11 + TSS region transcription start site region 77160
Tssr77161 8 45746670 to 45746685 15 + TSS region transcription start site region 77161
Tssr77162 8 45748954 to 45748959 5 + TSS region transcription start site region 77162
Tssr2560 8 45749002 to 45749010 8 + TSS region transcription start site region 2560
Tssr77163 8 45749285 to 45749299 14 + TSS region transcription start site region 77163
Tssr77164 8 45763873 to 45763933 60 + TSS region transcription start site region 77164
Tssr77165 8 45763938 to 45763951 13 + TSS region transcription start site region 77165
Tssr77166 8 45763957 to 45763970 13 + TSS region transcription start site region 77166
Gm45457 8 45779228 to 45782316 3088 + unclassified gene predicted gene 45457
Tssr77167 8 45784753 to 45784757 4 + TSS region transcription start site region 77167
Tssr77168 8 45791510 to 45791513 3 + TSS region transcription start site region 77168
Cpgi20304 8 45795725 to 45796054 329 CpG island CpG island 20304
Tssr77169 8 45803700 to 45803703 3 + TSS region transcription start site region 77169
Tssr77170 8 45827260 to 45827283 23 + TSS region transcription start site region 77170
Tssr77171 8 45827342 to 45827347 5 + TSS region transcription start site region 77171
Gm25309 8 45864478 to 45864603 125 - snRNA gene predicted gene, 25309
Cpgi20305 8 45885340 to 45885653 313 CpG island CpG island 20305
Tssr77172 8 45885364 to 45885387 23 + TSS region transcription start site region 77172
Pdlim3 8 45885461 to 45919548 34087 + protein coding gene PDZ and LIM domain 3
Tssr77173 8 45885479 to 45885494 15 + TSS region transcription start site region 77173
Tssr77174 8 45885529 to 45885540 11 + TSS region transcription start site region 77174
D8Mit175 8 45885965 to 45886092 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 175
Cpgi20306 8 45918836 to 45919047 211 CpG island CpG island 20306
Gm45512 8 45920872 to 45922424 1552 + unclassified gene predicted gene 45512
Tssr77175 8 45934610 to 45934661 51 + TSS region transcription start site region 77175
Ccdc110 8 45934619 to 45944145 9526 + protein coding gene coiled-coil domain containing 110
Cpgi20307 8 45934632 to 45935090 458 CpG island CpG island 20307
Gm15878 8 45949612 to 45949917 305 + pseudogene predicted gene 15878
1700029J07Rik 8 45953606 to 45975252 21646 - protein coding gene RIKEN cDNA 1700029J07 gene
Cpgi20308 8 45975043 to 45975789 746 CpG island CpG island 20308
Tssr81185 8 45975224 to 45975281 57 - TSS region transcription start site region 81185
Tssr77176 8 45975514 to 45975558 44 + TSS region transcription start site region 77176
Ufsp2 8 45975528 to 45996958 21430 + protein coding gene UFM1-specific peptidase 2
Tssr77177 8 45992652 to 45992653 1 + TSS region transcription start site region 77177
Ankrd37 8 45996902 to 46000823 3921 - protein coding gene ankyrin repeat domain 37
Tssr77178 8 45999282 to 45999296 14 + TSS region transcription start site region 77178
Tssr77179 8 45999297 to 45999313 16 + TSS region transcription start site region 77179
Tssr77180 8 45999317 to 45999324 7 + TSS region transcription start site region 77180
Cpgi20309 8 45999684 to 46000566 882 CpG island CpG island 20309
Tssr81186 8 45999709 to 45999713 4 - TSS region transcription start site region 81186
Tssr81187 8 45999860 to 45999873 13 - TSS region transcription start site region 81187
Tssr81188 8 45999896 to 45999904 8 - TSS region transcription start site region 81188
D8Dcr14 8 46001614 to 46001714 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 14
Tssr77181 8 46010596 to 46010635 39 + TSS region transcription start site region 77181
Lrp2bp 8 46010598 to 46029478 18880 + protein coding gene Lrp2 binding protein
Snx25 8 46033261 to 46152159 118898 - protein coding gene sorting nexin 25
Tssr81189 8 46097784 to 46097788 4 - TSS region transcription start site region 81189
Gm23030 8 46107259 to 46107531 272 + unclassified non-coding RNA gene predicted gene, 23030
Cpgi20310 8 46151160 to 46152995 1835 CpG island CpG island 20310
Tssr77182 8 46151749 to 46151781 32 + TSS region transcription start site region 77182
Cfap97 8 46151777 to 46195590 43813 + protein coding gene cilia and flagella associated protein 97
Tssr77183 8 46151856 to 46151865 9 + TSS region transcription start site region 77183
Tssr81190 8 46152412 to 46152477 65 - TSS region transcription start site region 81190
Gm15634 8 46152610 to 46156100 3490 + sense intronic lncRNA gene predicted gene 15634
Tssr77184 8 46152634 to 46152648 14 + TSS region transcription start site region 77184
Gm45693 8 46162090 to 46163246 1156 + unclassified gene predicted gene 45693
Tssr77185 8 46162255 to 46162262 7 + TSS region transcription start site region 77185
Tssr77186 8 46162265 to 46162274 9 + TSS region transcription start site region 77186
Tssr77187 8 46162277 to 46162286 9 + TSS region transcription start site region 77187
Cpgi20311 8 46163224 to 46164168 944 CpG island CpG island 20311
Tssr81191 8 46163535 to 46163569 34 - TSS region transcription start site region 81191
Tssr77188 8 46163675 to 46163729 54 + TSS region transcription start site region 77188
Tssr77189 8 46163733 to 46163750 17 + TSS region transcription start site region 77189
Tssr77190 8 46163765 to 46163778 13 + TSS region transcription start site region 77190
Tssr77191 8 46163784 to 46163800 16 + TSS region transcription start site region 77191
Tssr77192 8 46163814 to 46163842 28 + TSS region transcription start site region 77192
Tssr77193 8 46194193 to 46194205 12 + TSS region transcription start site region 77193
Slc25a4 8 46207339 to 46211009 3670 - protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
Tssr77194 8 46207544 to 46207599 55 + TSS region transcription start site region 77194
Tssr81192 8 46207553 to 46207573 20 - TSS region transcription start site region 81192
Tssr81193 8 46207594 to 46207626 32 - TSS region transcription start site region 81193
Tssr81194 8 46208438 to 46208469 31 - TSS region transcription start site region 81194
Cpgi20312 8 46208442 to 46208618 176 CpG island CpG island 20312
Tssr81195 8 46208517 to 46208543 26 - TSS region transcription start site region 81195
Tssr81196 8 46209056 to 46209122 66 - TSS region transcription start site region 81196
Tssr81197 8 46209138 to 46209157 19 - TSS region transcription start site region 81197
Tssr81198 8 46209239 to 46209258 19 - TSS region transcription start site region 81198
Cpgi20313 8 46210268 to 46211498 1230 CpG island CpG island 20313
Tssr81199 8 46210393 to 46210404 11 - TSS region transcription start site region 81199
Tssr81200 8 46211020 to 46211036 16 - TSS region transcription start site region 81200
Actg-ps1 8 46229011 to 46230128 1117 + pseudogene actin, gamma, pseudogene 1
Gm23812 8 46229794 to 46229877 83 + miRNA gene predicted gene, 23812
Cpgi20314 8 46252332 to 46252527 195 CpG island CpG island 20314
Gm10313 8 46254677 to 46255678 1001 - pseudogene predicted pseudogene 10313
Gm24669 8 46272051 to 46272147 96 + snRNA gene predicted gene, 24669
Gm8575 8 46279672 to 46280192 520 + pseudogene predicted gene 8575
Gm30880 8 46281945 to 46284669 2724 - lncRNA gene predicted gene, 30880
Helt 8 46292043 to 46294671 2628 - protein coding gene helt bHLH transcription factor
Cpgi20315 8 46292098 to 46292742 644 CpG island CpG island 20315
Cpgi20316 8 46293936 to 46294901 965 CpG island CpG island 20316
Tssr81201 8 46294592 to 46294601 9 - TSS region transcription start site region 81201
Gm39168 8 46301637 to 46325729 24092 + lincRNA gene predicted gene, 39168
Tssr77195 8 46310739 to 46310743 4 + TSS region transcription start site region 77195
Gm45255 8 46313801 to 46314611 810 + unclassified gene predicted gene 45255
Gm30931 8 46363251 to 46367204 3953 + lincRNA gene predicted gene, 30931
Gm45253 8 46372106 to 46385888 13782 - lincRNA gene predicted gene 45253
Tssr77196 8 46419701 to 46419707 6 + TSS region transcription start site region 77196
Tssr81202 8 46426341 to 46426382 41 - TSS region transcription start site region 81202
Tssr81203 8 46430155 to 46430175 20 - TSS region transcription start site region 81203
Tssr77197 8 46432851 to 46432860 9 + TSS region transcription start site region 77197
Tssr77198 8 46433016 to 46433027 11 + TSS region transcription start site region 77198
Gm45245 8 46451929 to 46452304 375 - pseudogene predicted gene 45245
Gm31050 8 46469991 to 46470951 960 - lncRNA gene predicted gene, 31050
Cpgi20317 8 46470628 to 46471810 1182 CpG island CpG island 20317
Acsl1 8 46471037 to 46536051 65014 + protein coding gene acyl-CoA synthetase long-chain family member 1
Tssr77199 8 46471048 to 46471078 30 + TSS region transcription start site region 77199
Tssr77200 8 46471081 to 46471109 28 + TSS region transcription start site region 77200
Tssr77201 8 46471169 to 46471186 17 + TSS region transcription start site region 77201
Gm45244 8 46471391 to 46473590 2199 - unclassified gene predicted gene 45244
Tssr81204 8 46471606 to 46471616 10 - TSS region transcription start site region 81204
Tssr81205 8 46471639 to 46471651 12 - TSS region transcription start site region 81205
Tssr77202 8 46471693 to 46471704 11 + TSS region transcription start site region 77202
Tssr2561 8 46471711 to 46471717 6 + TSS region transcription start site region 2561
Tssr77203 8 46471719 to 46471785 66 + TSS region transcription start site region 77203
Tssr77204 8 46471887 to 46471901 14 + TSS region transcription start site region 77204
Tssr77205 8 46471936 to 46471953 17 + TSS region transcription start site region 77205
Tssr77206 8 46472360 to 46472393 33 + TSS region transcription start site region 77206
Tssr77207 8 46472397 to 46472412 15 + TSS region transcription start site region 77207
Tssr81206 8 46472427 to 46472430 3 - TSS region transcription start site region 81206
Tssr77208 8 46474376 to 46474390 14 + TSS region transcription start site region 77208