Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:44947917-46307933

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208 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fat1 8 44935447 to 45052257 116810 + protein coding gene FAT atypical cadherin 1
Tssr77119 8 44950655 to 44950669 14 + TSS region transcription start site region 77119
Tssr77120 8 44951347 to 44951384 37 + TSS region transcription start site region 77120
Tssr77121 8 44957034 to 44957038 4 + TSS region transcription start site region 77121
Tssr77122 8 44961441 to 44961445 4 + TSS region transcription start site region 77122
Tssr77123 8 45007225 to 45007254 29 + TSS region transcription start site region 77123
Cpgi20292 8 45010418 to 45010645 227 CpG island CpG island 20292
Gm2366 8 45017216 to 45022385 5169 - antisense lncRNA gene predicted gene 2366
Cpgi20293 8 45021941 to 45022206 265 CpG island CpG island 20293
Tssr81148 8 45024752 to 45024769 17 - TSS region transcription start site region 81148
Cpgi20294 8 45043955 to 45044617 662 CpG island CpG island 20294
Tssr77124 8 45050920 to 45050933 13 + TSS region transcription start site region 77124
Cpgi20295 8 45051063 to 45051640 577 CpG island CpG island 20295
Tssr77125 8 45051500 to 45051550 50 + TSS region transcription start site region 77125
Tssr77126 8 45051556 to 45051657 101 + TSS region transcription start site region 77126
AY512931 8 45060702 to 45065418 4716 - lincRNA gene cDNA sequence AY512931
Cpgi20296 8 45068758 to 45069320 562 CpG island CpG island 20296
Mtnr1a 8 45069137 to 45088506 19369 + protein coding gene melatonin receptor 1A
Cpgi20297 8 45087356 to 45087609 253 CpG island CpG island 20297
Gm30504 8 45110481 to 45196541 86060 + lincRNA gene predicted gene, 30504
D8Mit229 8 45140338 to 45140499 161 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 229
Gm6329 8 45160494 to 45165145 4651 - lincRNA gene predicted gene 6329
Tssr77127 8 45186722 to 45186731 9 + TSS region transcription start site region 77127
F11 8 45241174 to 45262031 20857 - protein coding gene coagulation factor XI
Cpgi20298 8 45252049 to 45252370 321 CpG island CpG island 20298
Tssr81149 8 45261976 to 45261996 20 - TSS region transcription start site region 81149
Tssr81150 8 45262002 to 45262009 7 - TSS region transcription start site region 81150
Tssr81151 8 45262012 to 45262057 45 - TSS region transcription start site region 81151
Tssr81152 8 45262075 to 45262084 9 - TSS region transcription start site region 81152
Tssr81153 8 45262108 to 45262119 11 - TSS region transcription start site region 81153
Klkb1 8 45266688 to 45294835 28147 - protein coding gene kallikrein B, plasma 1
Gm45753 8 45269671 to 45308466 38795 - protein coding gene predicted gene 45753
Tssr81154 8 45277036 to 45277040 4 - TSS region transcription start site region 81154
Tssr81155 8 45281601 to 45281619 18 - TSS region transcription start site region 81155
Tssr81156 8 45283322 to 45283331 9 - TSS region transcription start site region 81156
Tssr81157 8 45294780 to 45294795 15 - TSS region transcription start site region 81157
Tssr81158 8 45294803 to 45294823 20 - TSS region transcription start site region 81158
Tssr81159 8 45294854 to 45294863 9 - TSS region transcription start site region 81159
Tssr81160 8 45294867 to 45294872 5 - TSS region transcription start site region 81160
Cyp4v3 8 45305802 to 45333196 27394 - protein coding gene cytochrome P450, family 4, subfamily v, polypeptide 3
Tssr81161 8 45306146 to 45306155 9 - TSS region transcription start site region 81161
Tssr81162 8 45306172 to 45306183 11 - TSS region transcription start site region 81162
Tssr81163 8 45306806 to 45306822 16 - TSS region transcription start site region 81163
Tssr81164 8 45307078 to 45307089 11 - TSS region transcription start site region 81164
Tssr81165 8 45310244 to 45310255 11 - TSS region transcription start site region 81165
Tssr81166 8 45310280 to 45310285 5 - TSS region transcription start site region 81166
Cpgi20299 8 45332669 to 45333453 784 CpG island CpG island 20299
Tssr81167 8 45333100 to 45333111 11 - TSS region transcription start site region 81167
Tssr81168 8 45333124 to 45333176 52 - TSS region transcription start site region 81168
Tssr81169 8 45333189 to 45333208 19 - TSS region transcription start site region 81169
Tssr81170 8 45333238 to 45333257 19 - TSS region transcription start site region 81170
Fam149a 8 45336717 to 45382291 45574 - protein coding gene family with sequence similarity 149, member A
Cpgi20300 8 45358260 to 45358833 573 CpG island CpG island 20300
Tssr81171 8 45358737 to 45358819 82 - TSS region transcription start site region 81171
Cpgi20301 8 45363678 to 45363938 260 CpG island CpG island 20301
Cpgi20302 8 45381207 to 45381809 602 CpG island CpG island 20302
Tssr81172 8 45382086 to 45382095 9 - TSS region transcription start site region 81172
Tssr81173 8 45382108 to 45382130 22 - TSS region transcription start site region 81173
Tssr81174 8 45382131 to 45382142 11 - TSS region transcription start site region 81174
Tssr81175 8 45382147 to 45382192 45 - TSS region transcription start site region 81175
Tssr81176 8 45382198 to 45382214 16 - TSS region transcription start site region 81176
Tlr3 8 45395665 to 45411080 15415 - protein coding gene toll-like receptor 3
Tssr81177 8 45409895 to 45409900 5 - TSS region transcription start site region 81177
Tssr2558 8 45409926 to 45409935 9 - TSS region transcription start site region 2558
Tssr2559 8 45409938 to 45409950 12 - TSS region transcription start site region 2559
Gm45542 8 45410063 to 45410760 697 + antisense lncRNA gene predicted gene 45542
Tssr81178 8 45410330 to 45410359 29 - TSS region transcription start site region 81178
Tssr81179 8 45410364 to 45410387 23 - TSS region transcription start site region 81179
Tssr81180 8 45410525 to 45410606 81 - TSS region transcription start site region 81180
Tssr81181 8 45410985 to 45411003 18 - TSS region transcription start site region 81181
D8Mit192 8 45459031 to 45459149 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 192
Tssr77128 8 45507502 to 45507522 20 + TSS region transcription start site region 77128
Tssr77129 8 45507737 to 45507740 3 + TSS region transcription start site region 77129
Tssr77130 8 45507768 to 45507807 39 + TSS region transcription start site region 77130
Sorbs2 8 45507788 to 45827906 320118 + protein coding gene sorbin and SH3 domain containing 2
Tssr77131 8 45507820 to 45507825 5 + TSS region transcription start site region 77131
Tssr77132 8 45507894 to 45507905 11 + TSS region transcription start site region 77132
Gm30759 8 45526389 to 45551328 24939 - lncRNA gene predicted gene, 30759
Gm45458 8 45539594 to 45540115 521 - unclassified gene predicted gene 45458
Tssr81182 8 45555732 to 45555735 3 - TSS region transcription start site region 81182
Tssr81183 8 45555737 to 45555745 8 - TSS region transcription start site region 81183
Gm16351 8 45579788 to 45599944 20156 - antisense lncRNA gene predicted gene 16351
Tssr77133 8 45579942 to 45579947 5 + TSS region transcription start site region 77133
Gm23604 8 45581616 to 45581747 131 - snoRNA gene predicted gene, 23604
Tssr77134 8 45627688 to 45627699 11 + TSS region transcription start site region 77134
Tssr77135 8 45627709 to 45627754 45 + TSS region transcription start site region 77135
Tssr77136 8 45627801 to 45627844 43 + TSS region transcription start site region 77136
Cpgi20303 8 45627824 to 45628160 336 CpG island CpG island 20303
Tssr77137 8 45627917 to 45627933 16 + TSS region transcription start site region 77137
Tssr77138 8 45627946 to 45627975 29 + TSS region transcription start site region 77138
Tssr77139 8 45627976 to 45628001 25 + TSS region transcription start site region 77139
Tssr77140 8 45628058 to 45628071 13 + TSS region transcription start site region 77140
Tssr77141 8 45628080 to 45628093 13 + TSS region transcription start site region 77141
Tssr77142 8 45628112 to 45628129 17 + TSS region transcription start site region 77142
Tssr77143 8 45628155 to 45628170 15 + TSS region transcription start site region 77143
Tssr77144 8 45628176 to 45628219 43 + TSS region transcription start site region 77144
Tssr81184 8 45630642 to 45630658 16 - TSS region transcription start site region 81184
Gm30635 8 45649946 to 45665137 15191 - lncRNA gene predicted gene, 30635
Tssr77145 8 45658273 to 45658298 25 + TSS region transcription start site region 77145
Tssr77146 8 45658299 to 45658308 9 + TSS region transcription start site region 77146
Tssr77147 8 45658309 to 45658323 14 + TSS region transcription start site region 77147
Tssr77148 8 45658324 to 45658338 14 + TSS region transcription start site region 77148
D8Mit297 8 45658458 to 45658559 101 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 297
Tssr77149 8 45658666 to 45658728 62 + TSS region transcription start site region 77149
Tssr77150 8 45658731 to 45658798 67 + TSS region transcription start site region 77150
Tssr77151 8 45658815 to 45658824 9 + TSS region transcription start site region 77151
Tssr77152 8 45658872 to 45658898 26 + TSS region transcription start site region 77152
Tssr77153 8 45658903 to 45658914 11 + TSS region transcription start site region 77153
D8Mit176 8 45666696 to 45666833 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 176
Tssr77154 8 45689982 to 45690000 18 + TSS region transcription start site region 77154
Tssr77155 8 45690101 to 45690112 11 + TSS region transcription start site region 77155
Tssr77156 8 45690121 to 45690144 23 + TSS region transcription start site region 77156
Tssr77157 8 45695379 to 45695394 15 + TSS region transcription start site region 77157
Tssr77158 8 45695469 to 45695483 14 + TSS region transcription start site region 77158
Tssr77159 8 45696414 to 45696418 4 + TSS region transcription start site region 77159
Sorbs2os 8 45723325 to 45819297 95972 - antisense lncRNA gene sorbin and SH3 domain containing 2, opposite strand
Tssr77160 8 45746617 to 45746628 11 + TSS region transcription start site region 77160
Tssr77161 8 45746670 to 45746685 15 + TSS region transcription start site region 77161
Tssr77162 8 45748954 to 45748959 5 + TSS region transcription start site region 77162
Tssr2560 8 45749002 to 45749010 8 + TSS region transcription start site region 2560
Tssr77163 8 45749285 to 45749299 14 + TSS region transcription start site region 77163
Tssr77164 8 45763873 to 45763933 60 + TSS region transcription start site region 77164
Tssr77165 8 45763938 to 45763951 13 + TSS region transcription start site region 77165
Tssr77166 8 45763957 to 45763970 13 + TSS region transcription start site region 77166
Gm45457 8 45779228 to 45782316 3088 + unclassified gene predicted gene 45457
Tssr77167 8 45784753 to 45784757 4 + TSS region transcription start site region 77167
Tssr77168 8 45791510 to 45791513 3 + TSS region transcription start site region 77168
Cpgi20304 8 45795725 to 45796054 329 CpG island CpG island 20304
Tssr77169 8 45803700 to 45803703 3 + TSS region transcription start site region 77169
Tssr77170 8 45827260 to 45827283 23 + TSS region transcription start site region 77170
Tssr77171 8 45827342 to 45827347 5 + TSS region transcription start site region 77171
Gm25309 8 45864478 to 45864603 125 - snRNA gene predicted gene, 25309
Cpgi20305 8 45885340 to 45885653 313 CpG island CpG island 20305
Tssr77172 8 45885364 to 45885387 23 + TSS region transcription start site region 77172
Pdlim3 8 45885461 to 45919548 34087 + protein coding gene PDZ and LIM domain 3
Tssr77173 8 45885479 to 45885494 15 + TSS region transcription start site region 77173
Tssr77174 8 45885529 to 45885540 11 + TSS region transcription start site region 77174
D8Mit175 8 45885965 to 45886092 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 175
Cpgi20306 8 45918836 to 45919047 211 CpG island CpG island 20306
Gm45512 8 45920872 to 45922424 1552 + unclassified gene predicted gene 45512
Tssr77175 8 45934610 to 45934661 51 + TSS region transcription start site region 77175
Ccdc110 8 45934619 to 45944145 9526 + protein coding gene coiled-coil domain containing 110
Cpgi20307 8 45934632 to 45935090 458 CpG island CpG island 20307
Gm15878 8 45949612 to 45949917 305 + pseudogene predicted gene 15878
1700029J07Rik 8 45953606 to 45975252 21646 - protein coding gene RIKEN cDNA 1700029J07 gene
Cpgi20308 8 45975043 to 45975789 746 CpG island CpG island 20308
Tssr81185 8 45975224 to 45975281 57 - TSS region transcription start site region 81185
Tssr77176 8 45975514 to 45975558 44 + TSS region transcription start site region 77176
Ufsp2 8 45975528 to 45996958 21430 + protein coding gene UFM1-specific peptidase 2
Tssr77177 8 45992652 to 45992653 1 + TSS region transcription start site region 77177
Ankrd37 8 45996902 to 46000823 3921 - protein coding gene ankyrin repeat domain 37
Tssr77178 8 45999282 to 45999296 14 + TSS region transcription start site region 77178
Tssr77179 8 45999297 to 45999313 16 + TSS region transcription start site region 77179
Tssr77180 8 45999317 to 45999324 7 + TSS region transcription start site region 77180
Cpgi20309 8 45999684 to 46000566 882 CpG island CpG island 20309
Tssr81186 8 45999709 to 45999713 4 - TSS region transcription start site region 81186
Tssr81187 8 45999860 to 45999873 13 - TSS region transcription start site region 81187
Tssr81188 8 45999896 to 45999904 8 - TSS region transcription start site region 81188
D8Dcr14 8 46001614 to 46001714 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 14
Tssr77181 8 46010596 to 46010635 39 + TSS region transcription start site region 77181
Lrp2bp 8 46010598 to 46029478 18880 + protein coding gene Lrp2 binding protein
Snx25 8 46033261 to 46152159 118898 - protein coding gene sorting nexin 25
Tssr81189 8 46097784 to 46097788 4 - TSS region transcription start site region 81189
Gm23030 8 46107259 to 46107531 272 + unclassified non-coding RNA gene predicted gene, 23030
Cpgi20310 8 46151160 to 46152995 1835 CpG island CpG island 20310
Tssr77182 8 46151749 to 46151781 32 + TSS region transcription start site region 77182
Cfap97 8 46151777 to 46195590 43813 + protein coding gene cilia and flagella associated protein 97
Tssr77183 8 46151856 to 46151865 9 + TSS region transcription start site region 77183
Tssr81190 8 46152412 to 46152477 65 - TSS region transcription start site region 81190
Gm15634 8 46152610 to 46156100 3490 + sense intronic lncRNA gene predicted gene 15634
Tssr77184 8 46152634 to 46152648 14 + TSS region transcription start site region 77184
Gm45693 8 46162090 to 46163246 1156 + unclassified gene predicted gene 45693
Tssr77185 8 46162255 to 46162262 7 + TSS region transcription start site region 77185
Tssr77186 8 46162265 to 46162274 9 + TSS region transcription start site region 77186
Tssr77187 8 46162277 to 46162286 9 + TSS region transcription start site region 77187
Cpgi20311 8 46163224 to 46164168 944 CpG island CpG island 20311
Tssr81191 8 46163535 to 46163569 34 - TSS region transcription start site region 81191
Tssr77188 8 46163675 to 46163729 54 + TSS region transcription start site region 77188
Tssr77189 8 46163733 to 46163750 17 + TSS region transcription start site region 77189
Tssr77190 8 46163765 to 46163778 13 + TSS region transcription start site region 77190
Tssr77191 8 46163784 to 46163800 16 + TSS region transcription start site region 77191
Tssr77192 8 46163814 to 46163842 28 + TSS region transcription start site region 77192
Tssr77193 8 46194193 to 46194205 12 + TSS region transcription start site region 77193
Slc25a4 8 46207339 to 46211009 3670 - protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
Tssr77194 8 46207544 to 46207599 55 + TSS region transcription start site region 77194
Tssr81192 8 46207553 to 46207573 20 - TSS region transcription start site region 81192
Tssr81193 8 46207594 to 46207626 32 - TSS region transcription start site region 81193
Tssr81194 8 46208438 to 46208469 31 - TSS region transcription start site region 81194
Cpgi20312 8 46208442 to 46208618 176 CpG island CpG island 20312
Tssr81195 8 46208517 to 46208543 26 - TSS region transcription start site region 81195
Tssr81196 8 46209056 to 46209122 66 - TSS region transcription start site region 81196
Tssr81197 8 46209138 to 46209157 19 - TSS region transcription start site region 81197
Tssr81198 8 46209239 to 46209258 19 - TSS region transcription start site region 81198
Cpgi20313 8 46210268 to 46211498 1230 CpG island CpG island 20313
Tssr81199 8 46210393 to 46210404 11 - TSS region transcription start site region 81199
Tssr81200 8 46211020 to 46211036 16 - TSS region transcription start site region 81200
Actg-ps1 8 46229011 to 46230128 1117 + pseudogene actin, gamma, pseudogene 1
Gm23812 8 46229794 to 46229877 83 + miRNA gene predicted gene, 23812
Cpgi20314 8 46252332 to 46252527 195 CpG island CpG island 20314
Gm10313 8 46254677 to 46255678 1001 - pseudogene predicted pseudogene 10313