Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:4221156-5100350

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20047 8 4226647 to 4227124 477 CpG island CpG island 20047
Lrrc8e 8 4226827 to 4237470 10643 + protein coding gene leucine rich repeat containing 8 family, member E
Tssr76103 8 4226903 to 4226922 19 + TSS region transcription start site region 76103
Tssr76104 8 4226925 to 4226963 38 + TSS region transcription start site region 76104
Cpgi20048 8 4238115 to 4239387 1272 CpG island CpG island 20048
Tssr76105 8 4238733 to 4238767 34 + TSS region transcription start site region 76105
Map2k7 8 4238740 to 4247897 9157 + protein coding gene mitogen-activated protein kinase kinase 7
Tssr76106 8 4238815 to 4238886 71 + TSS region transcription start site region 76106
Gm49320 8 4238865 to 4251423 12558 + protein coding gene predicted gene, 49320
Tssr76107 8 4239098 to 4239107 9 + TSS region transcription start site region 76107
Tssr76108 8 4240128 to 4240148 20 + TSS region transcription start site region 76108
Tssr76109 8 4243367 to 4243387 20 + TSS region transcription start site region 76109
Tssr76110 8 4248188 to 4248219 31 + TSS region transcription start site region 76110
Tgfbr3l 8 4248214 to 4251423 3209 + protein coding gene transforming growth factor, beta receptor III-like
Tssr76111 8 4248223 to 4248241 18 + TSS region transcription start site region 76111
Tssr76112 8 4248248 to 4248267 19 + TSS region transcription start site region 76112
Cpgi20049 8 4249267 to 4249824 557 CpG island CpG island 20049
Tssr76113 8 4249457 to 4249459 2 + TSS region transcription start site region 76113
Tssr76114 8 4250307 to 4250319 12 + TSS region transcription start site region 76114
Cpgi20050 8 4250340 to 4250721 381 CpG island CpG island 20050
Tssr76115 8 4250433 to 4250444 11 + TSS region transcription start site region 76115
Cpgi20051 8 4252798 to 4253854 1056 CpG island CpG island 20051
Tssr76116 8 4253067 to 4253128 61 + TSS region transcription start site region 76116
Snapc2 8 4253102 to 4256220 3118 + protein coding gene small nuclear RNA activating complex, polypeptide 2
Tssr76117 8 4253130 to 4253136 6 + TSS region transcription start site region 76117
Ctxn1 8 4257660 to 4259274 1614 - protein coding gene cortexin 1
Tssr76118 8 4257763 to 4257803 40 + TSS region transcription start site region 76118
Cpgi20052 8 4258166 to 4259648 1482 CpG island CpG island 20052
Tssr80263 8 4258176 to 4258220 44 - TSS region transcription start site region 80263
Tssr80264 8 4258248 to 4258279 31 - TSS region transcription start site region 80264
Tssr80265 8 4258297 to 4258313 16 - TSS region transcription start site region 80265
Tssr80266 8 4258327 to 4258367 40 - TSS region transcription start site region 80266
Tssr80267 8 4259137 to 4259172 35 - TSS region transcription start site region 80267
Tssr80268 8 4259173 to 4259185 12 - TSS region transcription start site region 80268
Tssr80269 8 4259207 to 4259248 41 - TSS region transcription start site region 80269
Tssr80270 8 4259257 to 4259283 26 - TSS region transcription start site region 80270
Timm44 8 4259731 to 4275905 16174 - protein coding gene translocase of inner mitochondrial membrane 44
Gm26102 8 4274853 to 4275136 283 + unclassified non-coding RNA gene predicted gene, 26102
Cpgi20053 8 4275529 to 4276265 736 CpG island CpG island 20053
Tssr80271 8 4275886 to 4275915 29 - TSS region transcription start site region 80271
Elavl1 8 4285382 to 4325413 40031 - protein coding gene ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
Tssr80272 8 4289536 to 4289541 5 - TSS region transcription start site region 80272
Tssr80273 8 4289595 to 4289652 57 - TSS region transcription start site region 80273
Tssr80274 8 4295534 to 4295554 20 - TSS region transcription start site region 80274
Cpgi20054 8 4324415 to 4325789 1374 CpG island CpG island 20054
Tssr80275 8 4324970 to 4324985 15 - TSS region transcription start site region 80275
Tssr80276 8 4324999 to 4325091 92 - TSS region transcription start site region 80276
Tssr80277 8 4325096 to 4325110 14 - TSS region transcription start site region 80277
Tssr76119 8 4325205 to 4325263 58 + TSS region transcription start site region 76119
Ccl25 8 4325210 to 4360020 34810 + protein coding gene chemokine (C-C motif) ligand 25
Tssr80278 8 4325320 to 4325328 8 - TSS region transcription start site region 80278
Tssr76120 8 4349596 to 4349611 15 + TSS region transcription start site region 76120
Tssr76121 8 4354144 to 4354155 11 + TSS region transcription start site region 76121
Tssr76122 8 4359734 to 4359756 22 + TSS region transcription start site region 76122
Gm44869 8 4362298 to 4362654 356 - pseudogene predicted gene 44869
Gm45118 8 4368596 to 4402845 34249 - pseudogene predicted gene 45118
Tssr76123 8 4391673 to 4391675 2 + TSS region transcription start site region 76123
Gm7434 8 4391726 to 4392133 407 + pseudogene predicted gene 7434
Gm45117 8 4399238 to 4401011 1773 + unclassified gene predicted gene 45117
Tssr2482 8 4419355 to 4419357 2 + TSS region transcription start site region 2482
Gm6070 8 4465589 to 4466007 418 + pseudogene predicted gene 6070
Tssr2483 8 4477717 to 4477736 19 + TSS region transcription start site region 2483
Cers4 8 4492979 to 4529603 36624 + protein coding gene ceramide synthase 4
Tssr76124 8 4493022 to 4493045 23 + TSS region transcription start site region 76124
Cpgi20055 8 4493288 to 4494057 769 CpG island CpG island 20055
Tssr76125 8 4493420 to 4493435 15 + TSS region transcription start site region 76125
Tssr76126 8 4493443 to 4493472 29 + TSS region transcription start site region 76126
Tssr76127 8 4493475 to 4493491 16 + TSS region transcription start site region 76127
Tssr76128 8 4493496 to 4493511 15 + TSS region transcription start site region 76128
Gm36956 8 4521912 to 4522125 213 - unclassified gene predicted gene, 36956
Tssr76129 8 4522112 to 4522124 12 + TSS region transcription start site region 76129
Tssr76130 8 4524622 to 4524635 13 + TSS region transcription start site region 76130
Tssr76131 8 4524716 to 4524729 13 + TSS region transcription start site region 76131
Tssr76132 8 4524792 to 4524807 15 + TSS region transcription start site region 76132
Tssr76133 8 4524897 to 4524912 15 + TSS region transcription start site region 76133
A830058I18Rik 8 4527035 to 4529607 2572 unclassified gene RIKEN cDNA A830058I18 gene
Vmn2r-ps89 8 4529618 to 4538187 8569 - pseudogene vomeronasal 2, receptor, pseudogene 89
Cpgi20056 8 4612987 to 4613342 355 CpG island CpG island 20056
Tssr76134 8 4613131 to 4613142 11 + TSS region transcription start site region 76134
Tssr76135 8 4613152 to 4613177 25 + TSS region transcription start site region 76135
Zfp958 8 4613167 to 4630231 17064 + protein coding gene zinc finger protein 958
Tssr76136 8 4613182 to 4613207 25 + TSS region transcription start site region 76136
Tssr76137 8 4613211 to 4613224 13 + TSS region transcription start site region 76137
Gm7451 8 4641466 to 4642857 1391 + pseudogene predicted gene 7451
Tssr76138 8 4643062 to 4643070 8 + TSS region transcription start site region 76138
Gm30502 8 4651995 to 4653615 1620 + pseudogene predicted gene, 30502
Gm45224 8 4652064 to 4652477 413 + pseudogene predicted gene 45224
Gm39123 8 4656156 to 4665350 9194 - lncRNA gene predicted gene, 39123
Cpgi20057 8 4677202 to 4678795 1593 CpG island CpG island 20057
Tssr80279 8 4677319 to 4677339 20 - TSS region transcription start site region 80279
Gm7461 8 4677539 to 4678365 826 - unclassified non-coding RNA gene predicted gene 7461
Tssr80280 8 4678338 to 4678356 18 - TSS region transcription start site region 80280
Tssr76139 8 4678446 to 4678486 40 + TSS region transcription start site region 76139
Gm6410 8 4678462 to 4688494 10032 + lincRNA gene predicted gene 6410
Tssr76140 8 4678528 to 4678538 10 + TSS region transcription start site region 76140
Tssr76141 8 4678661 to 4678675 14 + TSS region transcription start site region 76141
D8Mit1011 8 4680714 to 4680840 126 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1011
Gm2676 8 4713207 to 4713812 605 + pseudogene predicted gene 2676
Gm44959 8 4722606 to 4722836 230 - pseudogene predicted gene 44959
Gm39124 8 4724636 to 4728105 3469 - lncRNA gene predicted gene, 39124
Shcbp1 8 4735980 to 4779534 43554 - protein coding gene Shc SH2-domain binding protein 1
Tssr76142 8 4777799 to 4777817 18 + TSS region transcription start site region 76142
Cpgi20058 8 4778013 to 4778205 192 CpG island CpG island 20058
Gm6334 8 4778042 to 4778269 227 + pseudogene predicted gene 6334
Cpgi20059 8 4779219 to 4779683 464 CpG island CpG island 20059
Tssr80281 8 4779451 to 4779458 7 - TSS region transcription start site region 80281
Tssr80282 8 4779461 to 4779471 10 - TSS region transcription start site region 80282
Tssr80283 8 4779472 to 4779487 15 - TSS region transcription start site region 80283
Tssr80284 8 4779513 to 4779591 78 - TSS region transcription start site region 80284
Gm44960 8 4812530 to 4812670 140 + pseudogene predicted gene 44960
Gm9457 8 4812817 to 4813434 617 - pseudogene predicted gene 9457
Tssr80285 8 4813461 to 4813462 1 - TSS region transcription start site region 80285
Gm44961 8 4821035 to 4821230 195 - pseudogene predicted gene 44961
Tssr76143 8 4861127 to 4861135 8 + TSS region transcription start site region 76143
Rpl21-ps14 8 4861169 to 4861651 482 + pseudogene ribosomal protein L21, pseudogene 14
D8Mit153 8 4864820 to 4864943 123 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 153
D8Mit155 8 4976602 to 4976751 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 155
n-R5s93 8 5069259 to 5069377 118 - rRNA gene nuclear encoded rRNA 5S 93
Gm5739 8 5079297 to 5080993 1696 + pseudogene predicted gene 5739
Tssr76144 8 5080192 to 5080204 12 + TSS region transcription start site region 76144
Slc10a2 8 5083219 to 5105287 22068 - protein coding gene solute carrier family 10, member 2
Tssr80286 8 5085607 to 5085611 4 - TSS region transcription start site region 80286
Tssr80287 8 5085929 to 5085963 34 - TSS region transcription start site region 80287
nr 8 13650928 to 4976602 -8674326 heritable phenotypic marker nervous