Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:41211911-43282408

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgl1 8 41191434 to 41215156 23722 - protein coding gene fibrinogen-like protein 1
Tssr81106 8 41215146 to 41215168 22 - TSS region transcription start site region 81106
Tssr81107 8 41217896 to 41217927 31 - TSS region transcription start site region 81107
Tssr77088 8 41218089 to 41218099 10 + TSS region transcription start site region 77088
Tssr77089 8 41218120 to 41218165 45 + TSS region transcription start site region 77089
Gm16348 8 41218139 to 41220894 2755 + lncRNA gene predicted gene 16348
Tssr77090 8 41218376 to 41218389 13 + TSS region transcription start site region 77090
Cpgi20286 8 41239412 to 41240398 986 CpG island CpG island 20286
Tssr81108 8 41239443 to 41239456 13 - TSS region transcription start site region 81108
Tssr77091 8 41239573 to 41239659 86 + TSS region transcription start site region 77091
Tssr77092 8 41239718 to 41239767 49 + TSS region transcription start site region 77092
Pcm1 8 41239752 to 41332344 92592 + protein coding gene pericentriolar material 1
Tssr77093 8 41240983 to 41241019 36 + TSS region transcription start site region 77093
Tssr77094 8 41246487 to 41246490 3 + TSS region transcription start site region 77094
Tssr77095 8 41265670 to 41265681 11 + TSS region transcription start site region 77095
Tssr77096 8 41280348 to 41280356 8 + TSS region transcription start site region 77096
Tssr77097 8 41299130 to 41299133 3 + TSS region transcription start site region 77097
Tssr77098 8 41316011 to 41316029 18 + TSS region transcription start site region 77098
Tssr77099 8 41330686 to 41330699 13 + TSS region transcription start site region 77099
Asah1 8 41340197 to 41374773 34576 - protein coding gene N-acylsphingosine amidohydrolase 1
Tssr81109 8 41346133 to 41346153 20 - TSS region transcription start site region 81109
Tssr81110 8 41348628 to 41348644 16 - TSS region transcription start site region 81110
Cpgi20287 8 41374250 to 41375111 861 CpG island CpG island 20287
Tssr81111 8 41374602 to 41374677 75 - TSS region transcription start site region 81111
Tssr77100 8 41374839 to 41374881 42 + TSS region transcription start site region 77100
Frg1 8 41397459 to 41417074 19615 - protein coding gene FSHD region gene 1
Tssr81112 8 41400847 to 41400869 22 - TSS region transcription start site region 81112
Tssr81113 8 41407687 to 41407700 13 - TSS region transcription start site region 81113
Cpgi20288 8 41416722 to 41417366 644 CpG island CpG island 20288
Tssr81114 8 41416993 to 41417036 43 - TSS region transcription start site region 81114
Tssr81115 8 41417042 to 41417135 93 - TSS region transcription start site region 81115
Gapdh-ps14 8 41608668 to 41609669 1001 - pseudogene glyceraldehyde-3-phosphate dehydrogenase, pseudogene 14
Smarce1-ps1 8 41657593 to 41658669 1076 - pseudogene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseodogene 1
2810404M03Rik 8 41827267 to 42046202 218935 + lincRNA gene RIKEN cDNA 2810404M03 gene
Tssr81116 8 41835308 to 41835315 7 - TSS region transcription start site region 81116
Hspd1-ps1 8 41923520 to 41927127 3607 + pseudogene heat shock protein 1 (chaperonin), pseudogene 1
D8Dcr11 8 42024333 to 42024434 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 11
Zfp353-ps 8 42081460 to 42083109 1649 - pseudogene zinc finger protein 353, pseudogene
Tssr81117 8 42083302 to 42083316 14 - TSS region transcription start site region 81117
Tssr77101 8 42246834 to 42246837 3 + TSS region transcription start site region 77101
Gm6180 8 42246911 to 42247408 497 + pseudogene predicted pseudogene 6180
Tssr77102 8 42247189 to 42247214 25 + TSS region transcription start site region 77102
Gm23531 8 42522136 to 42522203 67 - snoRNA gene predicted gene, 23531
Gm26181 8 42742807 to 42742912 105 + snRNA gene predicted gene, 26181
Gm18414 8 42769434 to 42770127 693 + pseudogene predicted gene, 18414
D8Mit65 8 42935298 to 42935531 233 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 65
D8Dcr12 8 43072866 to 43072961 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 12
Gm45590 8 43085587 to 43085848 261 + pseudogene predicted gene 45590
Triml1 8 43129807 to 43141486 11679 - protein coding gene tripartite motif family-like 1
Obq30 8 43130285 to 43130285 0 QTL obesity QTL 30
Tssr81118 8 43141476 to 43141483 7 - TSS region transcription start site region 81118
Tssr81119 8 43141486 to 43141506 20 - TSS region transcription start site region 81119
Tssr81120 8 43141509 to 43141530 21 - TSS region transcription start site region 81120
Tssr81121 8 43143024 to 43143043 19 - TSS region transcription start site region 81121
Tssr81122 8 43143046 to 43143062 16 - TSS region transcription start site region 81122
Gm6284 8 43158757 to 43163946 5189 + pseudogene predicted gene 6284
Tssr81123 8 43180253 to 43180258 5 - TSS region transcription start site region 81123
Tssr81124 8 43180266 to 43180281 15 - TSS region transcription start site region 81124
Tssr81125 8 43180282 to 43180301 19 - TSS region transcription start site region 81125
Tssr81126 8 43180302 to 43180322 20 - TSS region transcription start site region 81126
Tssr77103 8 43180454 to 43180461 7 + TSS region transcription start site region 77103
Tssr77104 8 43180470 to 43180479 9 + TSS region transcription start site region 77104
Tssr77105 8 43180517 to 43180524 7 + TSS region transcription start site region 77105
Tssr77106 8 43180529 to 43180546 17 + TSS region transcription start site region 77106
Triml2 8 43180541 to 43193881 13340 + protein coding gene tripartite motif family-like 2
Gm2221 8 43199968 to 43200385 417 + pseudogene predicted gene 2221