Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:40903668-42314669

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc7a2 8 40862367 to 40922070 59703 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
Tssr77022 8 40904445 to 40904536 91 + TSS region transcription start site region 77022
Tssr81070 8 40904471 to 40904497 26 - TSS region transcription start site region 81070
Tssr77023 8 40905570 to 40905620 50 + TSS region transcription start site region 77023
Tssr77024 8 40905813 to 40905824 11 + TSS region transcription start site region 77024
Tssr77025 8 40905860 to 40905871 11 + TSS region transcription start site region 77025
Tssr77026 8 40906267 to 40906281 14 + TSS region transcription start site region 77026
Tssr77027 8 40906607 to 40906610 3 + TSS region transcription start site region 77027
Tssr77028 8 40906705 to 40906715 10 + TSS region transcription start site region 77028
Tssr77029 8 40906873 to 40906885 12 + TSS region transcription start site region 77029
Tssr77030 8 40907900 to 40907911 11 + TSS region transcription start site region 77030
Tssr77031 8 40908046 to 40908165 119 + TSS region transcription start site region 77031
Tssr77032 8 40908405 to 40908420 15 + TSS region transcription start site region 77032
Tssr77033 8 40908668 to 40908679 11 + TSS region transcription start site region 77033
Tssr77034 8 40908731 to 40908742 11 + TSS region transcription start site region 77034
Tssr77035 8 40909662 to 40909676 14 + TSS region transcription start site region 77035
Tssr77036 8 40910815 to 40910858 43 + TSS region transcription start site region 77036
Tssr77037 8 40911010 to 40911065 55 + TSS region transcription start site region 77037
Tssr77038 8 40912564 to 40912637 73 + TSS region transcription start site region 77038
Tssr77039 8 40913958 to 40914000 42 + TSS region transcription start site region 77039
Tssr77040 8 40914003 to 40914082 79 + TSS region transcription start site region 77040
Tssr77041 8 40914911 to 40914995 84 + TSS region transcription start site region 77041
Tssr77042 8 40915053 to 40915072 19 + TSS region transcription start site region 77042
Tssr77043 8 40915648 to 40915665 17 + TSS region transcription start site region 77043
Tssr77044 8 40915838 to 40915858 20 + TSS region transcription start site region 77044
Tssr77045 8 40915860 to 40915881 21 + TSS region transcription start site region 77045
Tssr77046 8 40916537 to 40916546 9 + TSS region transcription start site region 77046
Tssr77047 8 40917152 to 40917157 5 + TSS region transcription start site region 77047
Tssr77048 8 40917390 to 40917401 11 + TSS region transcription start site region 77048
Tssr77049 8 40917525 to 40917532 7 + TSS region transcription start site region 77049
Tssr77050 8 40917544 to 40917571 27 + TSS region transcription start site region 77050
Tssr77051 8 40917582 to 40917593 11 + TSS region transcription start site region 77051
Tssr77052 8 40917635 to 40917647 12 + TSS region transcription start site region 77052
Tssr77053 8 40917648 to 40917713 65 + TSS region transcription start site region 77053
Tssr77054 8 40917863 to 40917883 20 + TSS region transcription start site region 77054
Tssr77055 8 40917904 to 40917915 11 + TSS region transcription start site region 77055
Tssr77056 8 40918495 to 40918506 11 + TSS region transcription start site region 77056
Tssr77057 8 40918512 to 40918523 11 + TSS region transcription start site region 77057
Tssr77058 8 40918581 to 40918604 23 + TSS region transcription start site region 77058
Tssr77059 8 40918762 to 40918776 14 + TSS region transcription start site region 77059
Tssr77060 8 40918986 to 40919000 14 + TSS region transcription start site region 77060
Tssr77061 8 40919020 to 40919031 11 + TSS region transcription start site region 77061
Tssr77062 8 40919032 to 40919043 11 + TSS region transcription start site region 77062
Tssr77063 8 40919057 to 40919195 138 + TSS region transcription start site region 77063
Tssr77064 8 40919268 to 40919279 11 + TSS region transcription start site region 77064
Tssr77065 8 40919494 to 40919514 20 + TSS region transcription start site region 77065
Tssr77066 8 40919517 to 40919529 12 + TSS region transcription start site region 77066
Tssr77067 8 40919560 to 40919571 11 + TSS region transcription start site region 77067
Tssr77068 8 40919581 to 40919599 18 + TSS region transcription start site region 77068
Tssr77069 8 40919615 to 40919634 19 + TSS region transcription start site region 77069
Tssr77070 8 40919643 to 40919654 11 + TSS region transcription start site region 77070
Tssr77071 8 40919673 to 40919722 49 + TSS region transcription start site region 77071
Tssr77072 8 40919732 to 40919762 30 + TSS region transcription start site region 77072
Tssr77073 8 40919777 to 40919801 24 + TSS region transcription start site region 77073
Tssr77074 8 40919809 to 40919821 12 + TSS region transcription start site region 77074
Tssr77075 8 40919831 to 40919849 18 + TSS region transcription start site region 77075
Tssr77076 8 40920071 to 40920082 11 + TSS region transcription start site region 77076
Tssr77077 8 40920336 to 40920371 35 + TSS region transcription start site region 77077
Tssr77078 8 40920382 to 40920411 29 + TSS region transcription start site region 77078
Tssr77079 8 40920856 to 40920873 17 + TSS region transcription start site region 77079
Tssr77080 8 40921396 to 40921426 30 + TSS region transcription start site region 77080
Tssr77081 8 40921819 to 40921832 13 + TSS region transcription start site region 77081
Tssr77082 8 40926220 to 40926266 46 + TSS region transcription start site region 77082
Pdgfrl 8 40926233 to 40990782 64549 + protein coding gene platelet-derived growth factor receptor-like
Tssr77083 8 40926268 to 40926353 85 + TSS region transcription start site region 77083
Cpgi20284 8 40926279 to 40926923 644 CpG island CpG island 20284
Mtus1 8 40990914 to 41133726 142812 - protein coding gene mitochondrial tumor suppressor 1
Tssr81071 8 40992824 to 40992838 14 - TSS region transcription start site region 81071
Tssr81072 8 41006768 to 41006783 15 - TSS region transcription start site region 81072
Tssr81073 8 41015800 to 41015831 31 - TSS region transcription start site region 81073
Tssr81074 8 41016295 to 41016321 26 - TSS region transcription start site region 81074
Tssr81075 8 41016583 to 41016614 31 - TSS region transcription start site region 81075
Tssr81076 8 41016749 to 41016767 18 - TSS region transcription start site region 81076
Tssr81077 8 41016785 to 41016807 22 - TSS region transcription start site region 81077
B430010I23Rik 8 41017468 to 41024216 6748 + antisense lncRNA gene RIKEN cDNA B430010I23 gene
Tssr77084 8 41017730 to 41017744 14 + TSS region transcription start site region 77084
Tssr81078 8 41020541 to 41020545 4 - TSS region transcription start site region 81078
Tssr81079 8 41039568 to 41039581 13 - TSS region transcription start site region 81079
Gm16192 8 41039756 to 41042053 2297 + antisense lncRNA gene predicted gene 16192
Tssr81080 8 41041605 to 41041610 5 - TSS region transcription start site region 81080
Tssr81081 8 41041669 to 41041676 7 - TSS region transcription start site region 81081
Tssr81082 8 41041828 to 41041851 23 - TSS region transcription start site region 81082
Tssr81083 8 41041854 to 41041863 9 - TSS region transcription start site region 81083
Tssr81084 8 41041881 to 41041913 32 - TSS region transcription start site region 81084
Tssr81085 8 41041917 to 41041928 11 - TSS region transcription start site region 81085
Tssr77085 8 41044162 to 41044164 2 + TSS region transcription start site region 77085
D8Dcr10 8 41051048 to 41051151 103 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 10
Gm16193 8 41053110 to 41064706 11596 + antisense lncRNA gene predicted gene 16193
Tssr81086 8 41053477 to 41053487 10 - TSS region transcription start site region 81086
Tssr81087 8 41054610 to 41054642 32 - TSS region transcription start site region 81087
Tssr81088 8 41054771 to 41054802 31 - TSS region transcription start site region 81088
Tssr81089 8 41054833 to 41054842 9 - TSS region transcription start site region 81089
Tssr81090 8 41054858 to 41054869 11 - TSS region transcription start site region 81090
Tssr81091 8 41054870 to 41054877 7 - TSS region transcription start site region 81091
Tssr81092 8 41056572 to 41056583 11 - TSS region transcription start site region 81092
Tssr81093 8 41061201 to 41061205 4 - TSS region transcription start site region 81093
Tssr81094 8 41083064 to 41083088 24 - TSS region transcription start site region 81094
Tssr2555 8 41100774 to 41100778 4 + TSS region transcription start site region 2555
Tssr81095 8 41101880 to 41101923 43 - TSS region transcription start site region 81095
Tssr81096 8 41112797 to 41112804 7 - TSS region transcription start site region 81096
Tssr81097 8 41112852 to 41112867 15 - TSS region transcription start site region 81097
Tssr81098 8 41118721 to 41118728 7 - TSS region transcription start site region 81098
Cpgi20285 8 41133118 to 41134327 1209 CpG island CpG island 20285
Tssr81099 8 41133651 to 41133663 12 - TSS region transcription start site region 81099
Tssr81100 8 41133697 to 41133755 58 - TSS region transcription start site region 81100
Tssr81101 8 41133987 to 41134002 15 - TSS region transcription start site region 81101
Tssr81102 8 41134228 to 41134286 58 - TSS region transcription start site region 81102
Tssr77086 8 41141715 to 41141740 25 + TSS region transcription start site region 77086
Gm39167 8 41154052 to 41172984 18932 + lncRNA gene predicted gene, 39167
Tssr77087 8 41154089 to 41154106 17 + TSS region transcription start site region 77087
Fgl1 8 41191434 to 41215156 23722 - protein coding gene fibrinogen-like protein 1
D8Mit295 8 41194772 to 41194868 96 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 295
Tssr81103 8 41209803 to 41209816 13 - TSS region transcription start site region 81103
Tssr81104 8 41209827 to 41209841 14 - TSS region transcription start site region 81104
Tssr81105 8 41209849 to 41209857 8 - TSS region transcription start site region 81105
Tssr81106 8 41215146 to 41215168 22 - TSS region transcription start site region 81106
Tssr81107 8 41217896 to 41217927 31 - TSS region transcription start site region 81107
Tssr77088 8 41218089 to 41218099 10 + TSS region transcription start site region 77088
Tssr77089 8 41218120 to 41218165 45 + TSS region transcription start site region 77089
Gm16348 8 41218139 to 41220894 2755 + lncRNA gene predicted gene 16348
Tssr77090 8 41218376 to 41218389 13 + TSS region transcription start site region 77090
Cpgi20286 8 41239412 to 41240398 986 CpG island CpG island 20286
Tssr81108 8 41239443 to 41239456 13 - TSS region transcription start site region 81108
Tssr77091 8 41239573 to 41239659 86 + TSS region transcription start site region 77091
Tssr77092 8 41239718 to 41239767 49 + TSS region transcription start site region 77092
Pcm1 8 41239752 to 41332344 92592 + protein coding gene pericentriolar material 1
Tssr77093 8 41240983 to 41241019 36 + TSS region transcription start site region 77093
Tssr77094 8 41246487 to 41246490 3 + TSS region transcription start site region 77094
Tssr77095 8 41265670 to 41265681 11 + TSS region transcription start site region 77095
Tssr77096 8 41280348 to 41280356 8 + TSS region transcription start site region 77096
Tssr77097 8 41299130 to 41299133 3 + TSS region transcription start site region 77097
Tssr77098 8 41316011 to 41316029 18 + TSS region transcription start site region 77098
Tssr77099 8 41330686 to 41330699 13 + TSS region transcription start site region 77099
Asah1 8 41340197 to 41374773 34576 - protein coding gene N-acylsphingosine amidohydrolase 1
Tssr81109 8 41346133 to 41346153 20 - TSS region transcription start site region 81109
Tssr81110 8 41348628 to 41348644 16 - TSS region transcription start site region 81110
Cpgi20287 8 41374250 to 41375111 861 CpG island CpG island 20287
Tssr81111 8 41374602 to 41374677 75 - TSS region transcription start site region 81111
Tssr77100 8 41374839 to 41374881 42 + TSS region transcription start site region 77100
Frg1 8 41397459 to 41417074 19615 - protein coding gene FSHD region gene 1
Tssr81112 8 41400847 to 41400869 22 - TSS region transcription start site region 81112
Tssr81113 8 41407687 to 41407700 13 - TSS region transcription start site region 81113
Cpgi20288 8 41416722 to 41417366 644 CpG island CpG island 20288
Tssr81114 8 41416993 to 41417036 43 - TSS region transcription start site region 81114
Tssr81115 8 41417042 to 41417135 93 - TSS region transcription start site region 81115
Gapdh-ps14 8 41608668 to 41609669 1001 - pseudogene glyceraldehyde-3-phosphate dehydrogenase, pseudogene 14
Smarce1-ps1 8 41657593 to 41658669 1076 - pseudogene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseodogene 1
2810404M03Rik 8 41827267 to 42046202 218935 + lincRNA gene RIKEN cDNA 2810404M03 gene
Tssr81116 8 41835308 to 41835315 7 - TSS region transcription start site region 81116
Hspd1-ps1 8 41923520 to 41927127 3607 + pseudogene heat shock protein 1 (chaperonin), pseudogene 1
D8Dcr11 8 42024333 to 42024434 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 11
Zfp353-ps 8 42081460 to 42083109 1649 - pseudogene zinc finger protein 353, pseudogene
Tssr81117 8 42083302 to 42083316 14 - TSS region transcription start site region 81117
Tssr77101 8 42246834 to 42246837 3 + TSS region transcription start site region 77101
Gm6180 8 42246911 to 42247408 497 + pseudogene predicted pseudogene 6180
Tssr77102 8 42247189 to 42247214 25 + TSS region transcription start site region 77102