Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:3969098-4509107

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39122 8 3965712 to 3969482 3770 - lncRNA gene predicted gene, 39122
Cpgi20036 8 3994140 to 3994576 436 CpG island CpG island 20036
Gm7389 8 3994626 to 3997506 2880 + pseudogene predicted gene 7389
Tssr76091 8 3995021 to 3995024 3 + TSS region transcription start site region 76091
Cpgi20037 8 3996633 to 3997103 470 CpG island CpG island 20037
Gm45048 8 4016454 to 4016882 428 - pseudogene predicted gene 45048
Gm7397 8 4018992 to 4021471 2479 + pseudogene predicted gene 7397
Gm45049 8 4034157 to 4034747 590 - pseudogene predicted gene 45049
Gm7407 8 4039857 to 4040421 564 - pseudogene predicted gene 7407
Tssr80238 8 4040490 to 4040508 18 - TSS region transcription start site region 80238
Tssr76092 8 4087217 to 4087226 9 + TSS region transcription start site region 76092
Cpgi20038 8 4087224 to 4087757 533 CpG island CpG island 20038
Tssr80239 8 4087380 to 4087437 57 - TSS region transcription start site region 80239
Tssr76093 8 4087445 to 4087454 9 + TSS region transcription start site region 76093
Tssr76094 8 4087463 to 4087525 62 + TSS region transcription start site region 76094
Tssr76095 8 4087528 to 4087551 23 + TSS region transcription start site region 76095
Tssr76096 8 4087559 to 4087570 11 + TSS region transcription start site region 76096
Gm16589 8 4087658 to 4088575 917 + pseudogene predicted gene 16589
Tssr76097 8 4087694 to 4087717 23 + TSS region transcription start site region 76097
Gm26750 8 4088149 to 4089166 1017 - lincRNA gene predicted gene, 26750
Tssr76098 8 4088192 to 4088211 19 + TSS region transcription start site region 76098
Tssr164692 8 4088400 to 4088422 22 + TSS region transcription start site region 164692
Cd209f 8 4102787 to 4105835 3048 - protein coding gene CD209f antigen
Tssr80240 8 4105758 to 4105767 9 - TSS region transcription start site region 80240
Gm23888 8 4115513 to 4115765 252 - unclassified non-coding RNA gene predicted gene, 23888
Cd209g 8 4134246 to 4137707 3461 + protein coding gene CD209g antigen
Tssr76099 8 4134718 to 4134725 7 + TSS region transcription start site region 76099
4932443L11Rik 8 4162372 to 4182115 19743 - antisense lncRNA gene RIKEN cDNA 4932443L11 gene
Cpgi20039 8 4166250 to 4167199 949 CpG island CpG island 20039
Evi5l 8 4166538 to 4208050 41512 + protein coding gene ecotropic viral integration site 5 like
Tssr76100 8 4166556 to 4166593 37 + TSS region transcription start site region 76100
Tssr76101 8 4172871 to 4172876 5 + TSS region transcription start site region 76101
Tssr76102 8 4181943 to 4181955 12 + TSS region transcription start site region 76102
Cpgi20040 8 4193277 to 4193516 239 CpG island CpG island 20040
Cpgi20041 8 4205395 to 4206953 1558 CpG island CpG island 20041
Prr36 8 4209543 to 4217459 7916 - protein coding gene proline rich 36
Cpgi20042 8 4210586 to 4210758 172 CpG island CpG island 20042
Cpgi20043 8 4212905 to 4213056 151 CpG island CpG island 20043
Tssr80241 8 4213452 to 4213463 11 - TSS region transcription start site region 80241
Tssr80242 8 4213480 to 4213540 60 - TSS region transcription start site region 80242
Tssr80243 8 4213566 to 4213579 13 - TSS region transcription start site region 80243
Tssr80244 8 4213735 to 4213750 15 - TSS region transcription start site region 80244
Cpgi20044 8 4213753 to 4214228 475 CpG island CpG island 20044
Tssr80245 8 4214085 to 4214096 11 - TSS region transcription start site region 80245
Tssr80246 8 4214117 to 4214128 11 - TSS region transcription start site region 80246
Tssr80247 8 4214288 to 4214303 15 - TSS region transcription start site region 80247
Tssr80248 8 4214343 to 4214357 14 - TSS region transcription start site region 80248
Tssr80249 8 4214368 to 4214380 12 - TSS region transcription start site region 80249
Tssr80250 8 4214466 to 4214485 19 - TSS region transcription start site region 80250
Cpgi20045 8 4214555 to 4214955 400 CpG island CpG island 20045
Tssr80251 8 4214555 to 4214583 28 - TSS region transcription start site region 80251
Tssr80252 8 4214613 to 4214624 11 - TSS region transcription start site region 80252
Tssr80253 8 4214717 to 4214730 13 - TSS region transcription start site region 80253
Tssr80254 8 4214777 to 4214790 13 - TSS region transcription start site region 80254
Tssr80255 8 4216005 to 4216011 6 - TSS region transcription start site region 80255
Cpgi20046 8 4216355 to 4217443 1088 CpG island CpG island 20046
Tssr80256 8 4216979 to 4217003 24 - TSS region transcription start site region 80256
Tssr80257 8 4217018 to 4217043 25 - TSS region transcription start site region 80257
Tssr80258 8 4217113 to 4217126 13 - TSS region transcription start site region 80258
Tssr80259 8 4217133 to 4217168 35 - TSS region transcription start site region 80259
Tssr80260 8 4217179 to 4217252 73 - TSS region transcription start site region 80260
Tssr80261 8 4217261 to 4217301 40 - TSS region transcription start site region 80261
Tssr80262 8 4217466 to 4217503 37 - TSS region transcription start site region 80262
Cpgi20047 8 4226647 to 4227124 477 CpG island CpG island 20047
Lrrc8e 8 4226827 to 4237470 10643 + protein coding gene leucine rich repeat containing 8 family, member E
Tssr76103 8 4226903 to 4226922 19 + TSS region transcription start site region 76103
Tssr76104 8 4226925 to 4226963 38 + TSS region transcription start site region 76104
Cpgi20048 8 4238115 to 4239387 1272 CpG island CpG island 20048
Tssr76105 8 4238733 to 4238767 34 + TSS region transcription start site region 76105
Map2k7 8 4238740 to 4247897 9157 + protein coding gene mitogen-activated protein kinase kinase 7
Tssr76106 8 4238815 to 4238886 71 + TSS region transcription start site region 76106
Gm49320 8 4238865 to 4251423 12558 + protein coding gene predicted gene, 49320
Tssr76107 8 4239098 to 4239107 9 + TSS region transcription start site region 76107
Tssr76108 8 4240128 to 4240148 20 + TSS region transcription start site region 76108
Tssr76109 8 4243367 to 4243387 20 + TSS region transcription start site region 76109
Tssr76110 8 4248188 to 4248219 31 + TSS region transcription start site region 76110
Tgfbr3l 8 4248214 to 4251423 3209 + protein coding gene transforming growth factor, beta receptor III-like
Tssr76111 8 4248223 to 4248241 18 + TSS region transcription start site region 76111
Tssr76112 8 4248248 to 4248267 19 + TSS region transcription start site region 76112
Cpgi20049 8 4249267 to 4249824 557 CpG island CpG island 20049
Tssr76113 8 4249457 to 4249459 2 + TSS region transcription start site region 76113
Tssr76114 8 4250307 to 4250319 12 + TSS region transcription start site region 76114
Cpgi20050 8 4250340 to 4250721 381 CpG island CpG island 20050
Tssr76115 8 4250433 to 4250444 11 + TSS region transcription start site region 76115
Cpgi20051 8 4252798 to 4253854 1056 CpG island CpG island 20051
Tssr76116 8 4253067 to 4253128 61 + TSS region transcription start site region 76116
Snapc2 8 4253102 to 4256220 3118 + protein coding gene small nuclear RNA activating complex, polypeptide 2
Tssr76117 8 4253130 to 4253136 6 + TSS region transcription start site region 76117
Ctxn1 8 4257660 to 4259274 1614 - protein coding gene cortexin 1
Tssr76118 8 4257763 to 4257803 40 + TSS region transcription start site region 76118
Cpgi20052 8 4258166 to 4259648 1482 CpG island CpG island 20052
Tssr80263 8 4258176 to 4258220 44 - TSS region transcription start site region 80263
Tssr80264 8 4258248 to 4258279 31 - TSS region transcription start site region 80264
Tssr80265 8 4258297 to 4258313 16 - TSS region transcription start site region 80265
Tssr80266 8 4258327 to 4258367 40 - TSS region transcription start site region 80266
Tssr80267 8 4259137 to 4259172 35 - TSS region transcription start site region 80267
Tssr80268 8 4259173 to 4259185 12 - TSS region transcription start site region 80268
Tssr80269 8 4259207 to 4259248 41 - TSS region transcription start site region 80269
Tssr80270 8 4259257 to 4259283 26 - TSS region transcription start site region 80270
Timm44 8 4259731 to 4275905 16174 - protein coding gene translocase of inner mitochondrial membrane 44
Gm26102 8 4274853 to 4275136 283 + unclassified non-coding RNA gene predicted gene, 26102
Cpgi20053 8 4275529 to 4276265 736 CpG island CpG island 20053
Tssr80271 8 4275886 to 4275915 29 - TSS region transcription start site region 80271
Elavl1 8 4285382 to 4325413 40031 - protein coding gene ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
Tssr80272 8 4289536 to 4289541 5 - TSS region transcription start site region 80272
Tssr80273 8 4289595 to 4289652 57 - TSS region transcription start site region 80273
Tssr80274 8 4295534 to 4295554 20 - TSS region transcription start site region 80274
Cpgi20054 8 4324415 to 4325789 1374 CpG island CpG island 20054
Tssr80275 8 4324970 to 4324985 15 - TSS region transcription start site region 80275
Tssr80276 8 4324999 to 4325091 92 - TSS region transcription start site region 80276
Tssr80277 8 4325096 to 4325110 14 - TSS region transcription start site region 80277
Tssr76119 8 4325205 to 4325263 58 + TSS region transcription start site region 76119
Ccl25 8 4325210 to 4360020 34810 + protein coding gene chemokine (C-C motif) ligand 25
Tssr80278 8 4325320 to 4325328 8 - TSS region transcription start site region 80278
Tssr76120 8 4349596 to 4349611 15 + TSS region transcription start site region 76120
Tssr76121 8 4354144 to 4354155 11 + TSS region transcription start site region 76121
Tssr76122 8 4359734 to 4359756 22 + TSS region transcription start site region 76122
Gm44869 8 4362298 to 4362654 356 - pseudogene predicted gene 44869
Gm45118 8 4368596 to 4402845 34249 - pseudogene predicted gene 45118
Tssr76123 8 4391673 to 4391675 2 + TSS region transcription start site region 76123
Gm7434 8 4391726 to 4392133 407 + pseudogene predicted gene 7434
Gm45117 8 4399238 to 4401011 1773 + unclassified gene predicted gene 45117
Tssr2482 8 4419355 to 4419357 2 + TSS region transcription start site region 2482
Gm6070 8 4465589 to 4466007 418 + pseudogene predicted gene 6070
Tssr2483 8 4477717 to 4477736 19 + TSS region transcription start site region 2483
Cers4 8 4492979 to 4529603 36624 + protein coding gene ceramide synthase 4
Tssr76124 8 4493022 to 4493045 23 + TSS region transcription start site region 76124
Cpgi20055 8 4493288 to 4494057 769 CpG island CpG island 20055
Tssr76125 8 4493420 to 4493435 15 + TSS region transcription start site region 76125
Tssr76126 8 4493443 to 4493472 29 + TSS region transcription start site region 76126
Tssr76127 8 4493475 to 4493491 16 + TSS region transcription start site region 76127
Tssr76128 8 4493496 to 4493511 15 + TSS region transcription start site region 76128