Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:38206896-42656910

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400 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgcz 8 37522298 to 38661508 1139210 - protein coding gene sarcoglycan zeta
n-TLcag2 8 38213201 to 38213283 82 + tRNA gene nuclear encoded tRNA leucine 2 (anticodon CAG)
Mir383 8 38252133 to 38252202 69 - miRNA gene microRNA 383
Tssr80983 8 38359772 to 38359775 3 - TSS region transcription start site region 80983
D8Mit331 8 38362092 to 38362237 145 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-331
Gm18211 8 38417874 to 38418632 758 pseudogene predicted gene, 18211
Tssr80984 8 38473726 to 38473730 4 - TSS region transcription start site region 80984
9330187G09Rik 8 38513399 to 38517638 4239 unclassified gene RIKEN cDNA 9330187G09 gene
Tssr80985 8 38645802 to 38645804 2 - TSS region transcription start site region 80985
Gm40493 8 38659763 to 38671066 11303 + antisense lncRNA gene predicted gene, 40493
Cpgi20275 8 38659941 to 38661017 1076 CpG island CpG island 20275
Tssr80986 8 38661452 to 38661481 29 - TSS region transcription start site region 80986
Tssr80987 8 38661523 to 38661545 22 - TSS region transcription start site region 80987
Tssr80988 8 38661554 to 38661565 11 - TSS region transcription start site region 80988
Gm23128 8 38982904 to 38983035 131 - snoRNA gene predicted gene, 23128
Cpgi20276 8 39005519 to 39006478 959 CpG island CpG island 20276
Tssr76928 8 39005827 to 39005866 39 + TSS region transcription start site region 76928
Tusc3 8 39005845 to 39165114 159269 + protein coding gene tumor suppressor candidate 3
Tssr76929 8 39005880 to 39005952 72 + TSS region transcription start site region 76929
Tssr76930 8 39005961 to 39005972 11 + TSS region transcription start site region 76930
Tssr80989 8 39006185 to 39006192 7 - TSS region transcription start site region 80989
Tssr80990 8 39006215 to 39006224 9 - TSS region transcription start site region 80990
Tssr80991 8 39006248 to 39006263 15 - TSS region transcription start site region 80991
Tssr80992 8 39006267 to 39006273 6 - TSS region transcription start site region 80992
Tssr76931 8 39045661 to 39045691 30 + TSS region transcription start site region 76931
Tssr76932 8 39045975 to 39045992 17 + TSS region transcription start site region 76932
Tssr76933 8 39046024 to 39046036 12 + TSS region transcription start site region 76933
Tssr76934 8 39046037 to 39046063 26 + TSS region transcription start site region 76934
Tssr76935 8 39046073 to 39046082 9 + TSS region transcription start site region 76935
Tssr76936 8 39046595 to 39046650 55 + TSS region transcription start site region 76936
Tssr80993 8 39118939 to 39118957 18 - TSS region transcription start site region 80993
Tssr80994 8 39119001 to 39119013 12 - TSS region transcription start site region 80994
Tssr76937 8 39119126 to 39119139 13 + TSS region transcription start site region 76937
Tssr76938 8 39130741 to 39130745 4 + TSS region transcription start site region 76938
Tssr76939 8 39159355 to 39159358 3 + TSS region transcription start site region 76939
Gm1991 8 39162719 to 39163570 851 pseudogene predicted gene 1991
6430500C12Rik 8 39171655 to 39174191 2536 unclassified gene RIKEN cDNA 6430500C12 gene
Gm20948 8 39201049 to 39201497 448 + pseudogene predicted gene, 20948
Gm17766 8 39204126 to 39204462 336 + pseudogene predicted gene, 17766
Gm45398 8 39206468 to 39206632 164 + pseudogene predicted gene 45398
Zfp148-ps1 8 39282243 to 39285147 2904 + pseudogene zinc finger protein 148, pseudogene 1
Tssr76940 8 39297969 to 39298019 50 + TSS region transcription start site region 76940
Gm6213 8 39297980 to 39368268 70288 + lincRNA gene predicted gene 6213
Tssr76941 8 39298165 to 39298177 12 + TSS region transcription start site region 76941
Tssr76942 8 39298444 to 39298475 31 + TSS region transcription start site region 76942
Tssr76943 8 39298790 to 39298804 14 + TSS region transcription start site region 76943
Tssr76944 8 39300836 to 39300889 53 + TSS region transcription start site region 76944
Gm18644 8 39310452 to 39311694 1242 - pseudogene predicted gene, 18644
D8Mit294 8 39405411 to 39405520 109 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 294
Gm5609 8 39455910 to 39457176 1266 + pseudogene predicted gene 5609
Msr1 8 39581685 to 39642673 60988 - protein coding gene macrophage scavenger receptor 1
Tssr80995 8 39598360 to 39598399 39 - TSS region transcription start site region 80995
Tssr80996 8 39604537 to 39604582 45 - TSS region transcription start site region 80996
Tssr80997 8 39604586 to 39604605 19 - TSS region transcription start site region 80997
Tssr80998 8 39604960 to 39605018 58 - TSS region transcription start site region 80998
Tssr80999 8 39605024 to 39605080 56 - TSS region transcription start site region 80999
Tssr81000 8 39605219 to 39605264 45 - TSS region transcription start site region 81000
Tssr81001 8 39605275 to 39605280 5 - TSS region transcription start site region 81001
Tssr81002 8 39605289 to 39605306 17 - TSS region transcription start site region 81002
Tssr81003 8 39605311 to 39605332 21 - TSS region transcription start site region 81003
Tssr81004 8 39605371 to 39605384 13 - TSS region transcription start site region 81004
Tssr81005 8 39605392 to 39605409 17 - TSS region transcription start site region 81005
Tssr81006 8 39605429 to 39605446 17 - TSS region transcription start site region 81006
Tssr2550 8 39605467 to 39605474 7 - TSS region transcription start site region 2550
Tssr81007 8 39605494 to 39605511 17 - TSS region transcription start site region 81007
Tssr81008 8 39605604 to 39605612 8 - TSS region transcription start site region 81008
Tssr81009 8 39605620 to 39605643 23 - TSS region transcription start site region 81009
Tssr81010 8 39605647 to 39605665 18 - TSS region transcription start site region 81010
Tssr81011 8 39605725 to 39605732 7 - TSS region transcription start site region 81011
Tssr81012 8 39605750 to 39605761 11 - TSS region transcription start site region 81012
Tssr81013 8 39605918 to 39605925 7 - TSS region transcription start site region 81013
Tssr81014 8 39605945 to 39605958 13 - TSS region transcription start site region 81014
Tssr81015 8 39607547 to 39607559 12 - TSS region transcription start site region 81015
Tssr81016 8 39608152 to 39608163 11 - TSS region transcription start site region 81016
Tssr81017 8 39610464 to 39610479 15 - TSS region transcription start site region 81017
Tssr81018 8 39614079 to 39614087 8 - TSS region transcription start site region 81018
Tssr81019 8 39617459 to 39617472 13 - TSS region transcription start site region 81019
Tssr81020 8 39618399 to 39618427 28 - TSS region transcription start site region 81020
Tssr81021 8 39618433 to 39618445 12 - TSS region transcription start site region 81021
Tssr81022 8 39618652 to 39618666 14 - TSS region transcription start site region 81022
Tssr81023 8 39619233 to 39619243 10 - TSS region transcription start site region 81023
Tssr81024 8 39621677 to 39621684 7 - TSS region transcription start site region 81024
Tssr2551 8 39622253 to 39622274 21 - TSS region transcription start site region 2551
Tssr81025 8 39625088 to 39625130 42 - TSS region transcription start site region 81025
Tssr81026 8 39629245 to 39629257 12 - TSS region transcription start site region 81026
Tssr81027 8 39629348 to 39629355 7 - TSS region transcription start site region 81027
Tssr81028 8 39629398 to 39629409 11 - TSS region transcription start site region 81028
Tssr81029 8 39629517 to 39629533 16 - TSS region transcription start site region 81029
Tssr81030 8 39629639 to 39629650 11 - TSS region transcription start site region 81030
Tssr81031 8 39630333 to 39630346 13 - TSS region transcription start site region 81031
Tssr81032 8 39631197 to 39631206 9 - TSS region transcription start site region 81032
Tssr81033 8 39631307 to 39631318 11 - TSS region transcription start site region 81033
Tssr81034 8 39631332 to 39631369 37 - TSS region transcription start site region 81034
Tssr76945 8 39636156 to 39636174 18 + TSS region transcription start site region 76945
Tssr76946 8 39636192 to 39636205 13 + TSS region transcription start site region 76946
Gm36741 8 39636247 to 39708088 71841 + lncRNA gene predicted gene, 36741
Tssr81035 8 39637830 to 39637874 44 - TSS region transcription start site region 81035
Tssr81036 8 39639199 to 39639224 25 - TSS region transcription start site region 81036
Tssr81037 8 39642636 to 39642647 11 - TSS region transcription start site region 81037
Tssr81038 8 39642653 to 39642664 11 - TSS region transcription start site region 81038
Tssr81039 8 39642669 to 39642673 4 - TSS region transcription start site region 81039
Tssr81040 8 39643646 to 39643688 42 - TSS region transcription start site region 81040
Tssr81041 8 39643698 to 39643721 23 - TSS region transcription start site region 81041
Carcdq1 8 39709256 to 94689598 54980342 QTL cardiac collagen deposition QTL 1
Gm2033 8 39718680 to 39720966 2286 - pseudogene predicted gene 2033
Gm36795 8 39872396 to 39928157 55761 - lncRNA gene predicted gene, 36795
Tssr81042 8 39928126 to 39928135 9 - TSS region transcription start site region 81042
Gm10682 8 39930985 to 39933256 2271 protein coding gene predicted gene 10682
Tssr76947 8 39933357 to 39933397 40 + TSS region transcription start site region 76947
Gm8381 8 39940061 to 39940665 604 + pseudogene predicted gene 8381
Gm7082 8 40016714 to 40018248 1534 + pseudogene predicted gene 7082
Tssr76948 8 40124631 to 40124640 9 + TSS region transcription start site region 76948
Tssr76949 8 40124657 to 40124671 14 + TSS region transcription start site region 76949
Fgf20 8 40279166 to 40286953 7787 - protein coding gene fibroblast growth factor 20
Cpgi20277 8 40286164 to 40286735 571 CpG island CpG island 20277
D8Mit339 8 40306765 to 40306887 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 339
Micu3 8 40307458 to 40386308 78850 + protein coding gene mitochondrial calcium uptake family, member 3
Cpgi20278 8 40307548 to 40308775 1227 CpG island CpG island 20278
Mir7666 8 40307875 to 40307929 54 - miRNA gene microRNA 7666
Tssr81043 8 40307897 to 40307936 39 - TSS region transcription start site region 81043
Tssr76950 8 40308001 to 40308050 49 + TSS region transcription start site region 76950
Tssr81044 8 40308394 to 40308431 37 - TSS region transcription start site region 81044
Tssr76951 8 40385356 to 40385360 4 + TSS region transcription start site region 76951
Zdhhc2 8 40423002 to 40489592 66590 + protein coding gene zinc finger, DHHC domain containing 2
Cpgi20279 8 40423166 to 40424631 1465 CpG island CpG island 20279
Tssr2552 8 40423542 to 40423557 15 + TSS region transcription start site region 2552
Tssr76952 8 40423786 to 40423848 62 + TSS region transcription start site region 76952
Cpgi20280 8 40430982 to 40431245 263 CpG island CpG island 20280
Tssr76953 8 40431587 to 40431590 3 + TSS region transcription start site region 76953
Tssr76954 8 40431896 to 40431910 14 + TSS region transcription start site region 76954
Cnot7 8 40492540 to 40515847 23307 - protein coding gene CCR4-NOT transcription complex, subunit 7
Tssr81045 8 40495861 to 40495880 19 - TSS region transcription start site region 81045
Tssr81046 8 40510476 to 40510480 4 - TSS region transcription start site region 81046
Cpgi20281 8 40510836 to 40512541 1705 CpG island CpG island 20281
Tssr2553 8 40511216 to 40511229 13 - TSS region transcription start site region 2553
Tssr81047 8 40511258 to 40511274 16 - TSS region transcription start site region 81047
Tssr81048 8 40511277 to 40511297 20 - TSS region transcription start site region 81048
Tssr81049 8 40511298 to 40511346 48 - TSS region transcription start site region 81049
Tssr76955 8 40511416 to 40511444 28 + TSS region transcription start site region 76955
Tssr2554 8 40511477 to 40511488 11 + TSS region transcription start site region 2554
Tssr81050 8 40511663 to 40511756 93 - TSS region transcription start site region 81050
Tssr76956 8 40511769 to 40511787 18 + TSS region transcription start site region 76956
Vps37a 8 40511783 to 40551134 39351 + protein coding gene vacuolar protein sorting 37A
Tssr76957 8 40511789 to 40511862 73 + TSS region transcription start site region 76957
Tssr76958 8 40518825 to 40518869 44 + TSS region transcription start site region 76958
Tssr76959 8 40546303 to 40546332 29 + TSS region transcription start site region 76959
Tssr76960 8 40546349 to 40546400 51 + TSS region transcription start site region 76960
Tssr76961 8 40546530 to 40546549 19 + TSS region transcription start site region 76961
Tssr76962 8 40546595 to 40546617 22 + TSS region transcription start site region 76962
Tssr76963 8 40546621 to 40546640 19 + TSS region transcription start site region 76963
Tssr76964 8 40546679 to 40546705 26 + TSS region transcription start site region 76964
Mtmr7 8 40551095 to 40634797 83702 - protein coding gene myotubularin related protein 7
Tssr81051 8 40584681 to 40584722 41 - TSS region transcription start site region 81051
Tssr76965 8 40584936 to 40584954 18 + TSS region transcription start site region 76965
Tssr81052 8 40591834 to 40591842 8 - TSS region transcription start site region 81052
Tssr81053 8 40595142 to 40595153 11 - TSS region transcription start site region 81053
Tssr81054 8 40595164 to 40595173 9 - TSS region transcription start site region 81054
Tssr76966 8 40595549 to 40595579 30 + TSS region transcription start site region 76966
Tssr76967 8 40595665 to 40595674 9 + TSS region transcription start site region 76967
Tssr81055 8 40596210 to 40596216 6 - TSS region transcription start site region 81055
Tssr81056 8 40598014 to 40598026 12 - TSS region transcription start site region 81056
Tssr76968 8 40633580 to 40633610 30 + TSS region transcription start site region 76968
Cpgi20282 8 40634437 to 40635101 664 CpG island CpG island 20282
Tssr81057 8 40634729 to 40634744 15 - TSS region transcription start site region 81057
Tssr81058 8 40634750 to 40634775 25 - TSS region transcription start site region 81058
Tssr81059 8 40634776 to 40634806 30 - TSS region transcription start site region 81059
Tssr81060 8 40653679 to 40653724 45 - TSS region transcription start site region 81060
Tssr81061 8 40656020 to 40656026 6 - TSS region transcription start site region 81061
Tssr81062 8 40659910 to 40659915 5 - TSS region transcription start site region 81062
Tssr81063 8 40660417 to 40660430 13 - TSS region transcription start site region 81063
Tssr76969 8 40675048 to 40675056 8 + TSS region transcription start site region 76969
Tssr76970 8 40675059 to 40675086 27 + TSS region transcription start site region 76970
Adam24 8 40675077 to 40682199 7122 + protein coding gene a disintegrin and metallopeptidase domain 24 (testase 1)
Gm45660 8 40683497 to 40683647 150 - pseudogene predicted gene 45660
Gm8423 8 40712687 to 40713287 600 - pseudogene predicted gene 8423
Gm2080 8 40724835 to 40726407 1572 + pseudogene predicted gene 2080
Gm5749 8 40748003 to 40749092 1089 - pseudogene predicted gene 5749
Adam25 8 40752208 to 40756176 3968 + protein coding gene a disintegrin and metallopeptidase domain 25 (testase 2)
Tssr76971 8 40752227 to 40752245 18 + TSS region transcription start site region 76971
Gm8433 8 40765276 to 40766734 1458 + pseudogene predicted gene 8433
Gm8436 8 40789057 to 40790136 1079 - pseudogene predicted gene 8436
Tssr76972 8 40793272 to 40793297 25 + TSS region transcription start site region 76972
Adam20 8 40793273 to 40797303 4030 + protein coding gene a disintegrin and metallopeptidase domain 20
Adam39 8 40823009 to 40826861 3852 + protein coding gene a disintegrin and metallopeptidase domain 39
Tssr76973 8 40823026 to 40823065 39 + TSS region transcription start site region 76973
Gm5345 8 40853828 to 40855027 1199 - pseudogene predicted gene 5345
Tssr81064 8 40855095 to 40855102 7 - TSS region transcription start site region 81064
Gm8445 8 40855231 to 40856397 1166 + pseudogene predicted gene 8445
Tssr81065 8 40855553 to 40855557 4 - TSS region transcription start site region 81065
Tssr76974 8 40861829 to 40861843 14 + TSS region transcription start site region 76974
Cpgi20283 8 40862021 to 40862948 927 CpG island CpG island 20283
Tssr76975 8 40862182 to 40862250 68 + TSS region transcription start site region 76975
Tssr81066 8 40862239 to 40862248 9 - TSS region transcription start site region 81066
Tssr81067 8 40862254 to 40862307 53 - TSS region transcription start site region 81067
Tssr76976 8 40862261 to 40862272 11 + TSS region transcription start site region 76976
Slc7a2 8 40862367 to 40922070 59703 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
Tssr76977 8 40862379 to 40862430 51 + TSS region transcription start site region 76977
Gm26584 8 40862395 to 40865647 3252 - lincRNA gene predicted gene, 26584
Tssr76978 8 40862442 to 40862453 11 + TSS region transcription start site region 76978
Tssr76979 8 40863109 to 40863157 48 + TSS region transcription start site region 76979