Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:3657655-4186841

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Retn 8 3655770 to 3659818 4048 + protein coding gene resistin
Tssr80217 8 3659024 to 3659046 22 - TSS region transcription start site region 80217
Tssr76083 8 3659767 to 3659769 2 + TSS region transcription start site region 76083
Gm44776 8 3660599 to 3660979 380 - pseudogene predicted gene 44776
Tssr2480 8 3664519 to 3664569 50 - TSS region transcription start site region 2480
Tssr76084 8 3664746 to 3664783 37 + TSS region transcription start site region 76084
Tssr80218 8 3665621 to 3665655 34 - TSS region transcription start site region 80218
Tssr76085 8 3665747 to 3665763 16 + TSS region transcription start site region 76085
Mcemp1 8 3665762 to 3668905 3143 + protein coding gene mast cell expressed membrane protein 1
Tssr76086 8 3665773 to 3665784 11 + TSS region transcription start site region 76086
Tssr76087 8 3665958 to 3665968 10 + TSS region transcription start site region 76087
Tssr80219 8 3670523 to 3670526 3 - TSS region transcription start site region 80219
Fcor 8 3671188 to 3672362 1174 - protein coding gene Foxo1 corepressor
Cpgi20031 8 3672024 to 3672524 500 CpG island CpG island 20031
Tssr80220 8 3672290 to 3672364 74 - TSS region transcription start site region 80220
Gm39121 8 3672430 to 3672954 524 + lincRNA gene predicted gene, 39121
Gm45231 8 3674020 to 3676312 2292 - antisense lncRNA gene predicted gene 45231
Cpgi20032 8 3676181 to 3676914 733 CpG island CpG island 20032
Tssr76088 8 3676457 to 3676501 44 + TSS region transcription start site region 76088
Trappc5 8 3676477 to 3680921 4444 + protein coding gene trafficking protein particle complex 5
Tssr76089 8 3676503 to 3676547 44 + TSS region transcription start site region 76089
Tssr76090 8 3676562 to 3676573 11 + TSS region transcription start site region 76090
Cpgi20033 8 3678943 to 3679588 645 CpG island CpG island 20033
Fcer2a 8 3681737 to 3694175 12438 - protein coding gene Fc receptor, IgE, low affinity II, alpha polypeptide
Tssr80221 8 3685317 to 3685322 5 - TSS region transcription start site region 80221
Tssr80222 8 3694167 to 3694183 16 - TSS region transcription start site region 80222
Clec4g 8 3707064 to 3720651 13587 - protein coding gene C-type lectin domain family 4, member g
Gm16553 8 3709804 to 3739044 29240 + antisense lncRNA gene predicted gene 16553
Tssr2481 8 3711461 to 3711466 5 + TSS region transcription start site region 2481
Tssr80223 8 3717547 to 3717558 11 - TSS region transcription start site region 80223
Tssr80224 8 3717562 to 3717582 20 - TSS region transcription start site region 80224
Cpgi20034 8 3718625 to 3718900 275 CpG island CpG island 20034
Tssr80225 8 3720640 to 3720682 42 - TSS region transcription start site region 80225
Tssr80226 8 3720798 to 3720817 19 - TSS region transcription start site region 80226
Gm23886 8 3728925 to 3729237 312 - unclassified non-coding RNA gene predicted gene, 23886
Cd209a 8 3743397 to 3748984 5587 - protein coding gene CD209a antigen
Tssr80227 8 3748922 to 3748935 13 - TSS region transcription start site region 80227
Tssr80228 8 3748941 to 3748953 12 - TSS region transcription start site region 80228
Cpgi20035 8 3754396 to 3754558 162 CpG island CpG island 20035
Tssr80229 8 3754474 to 3754491 17 - TSS region transcription start site region 80229
Tssr80230 8 3754546 to 3754555 9 - TSS region transcription start site region 80230
Tssr80231 8 3754721 to 3754747 26 - TSS region transcription start site region 80231
Tssr80232 8 3754748 to 3754765 17 - TSS region transcription start site region 80232
Gm24934 8 3781020 to 3781130 110 + miRNA gene predicted gene, 24934
Rprl3 8 3803069 to 3803358 289 - RNase P RNA gene ribonuclease P RNA-like 3
Tssr80233 8 3803318 to 3803347 29 - TSS region transcription start site region 80233
Tssr80234 8 3803352 to 3803362 10 - TSS region transcription start site region 80234
Gm7381 8 3842096 to 3842395 299 - pseudogene predicted gene 7381
Cd209e 8 3847973 to 3854286 6313 - protein coding gene CD209e antigen
Cd209d 8 3871824 to 3878548 6724 - protein coding gene CD209d antigen
Tssr80235 8 3878549 to 3878568 19 - TSS region transcription start site region 80235
Cd209b 8 3917655 to 3926841 9186 - protein coding gene CD209b antigen
Tssr80236 8 3918216 to 3918219 3 - TSS region transcription start site region 80236
Tssr80237 8 3926807 to 3926838 31 - TSS region transcription start site region 80237
Cd209c 8 3940221 to 3954731 14510 - protein coding gene CD209c antigen
Gm39122 8 3965712 to 3969482 3770 - lncRNA gene predicted gene, 39122
Cpgi20036 8 3994140 to 3994576 436 CpG island CpG island 20036
Gm7389 8 3994626 to 3997506 2880 + pseudogene predicted gene 7389
Tssr76091 8 3995021 to 3995024 3 + TSS region transcription start site region 76091
Cpgi20037 8 3996633 to 3997103 470 CpG island CpG island 20037
Gm45048 8 4016454 to 4016882 428 - pseudogene predicted gene 45048
Gm7397 8 4018992 to 4021471 2479 + pseudogene predicted gene 7397
Gm45049 8 4034157 to 4034747 590 - pseudogene predicted gene 45049
Gm7407 8 4039857 to 4040421 564 - pseudogene predicted gene 7407
Tssr80238 8 4040490 to 4040508 18 - TSS region transcription start site region 80238
Tssr76092 8 4087217 to 4087226 9 + TSS region transcription start site region 76092
Cpgi20038 8 4087224 to 4087757 533 CpG island CpG island 20038
Tssr80239 8 4087380 to 4087437 57 - TSS region transcription start site region 80239
Tssr76093 8 4087445 to 4087454 9 + TSS region transcription start site region 76093
Tssr76094 8 4087463 to 4087525 62 + TSS region transcription start site region 76094
Tssr76095 8 4087528 to 4087551 23 + TSS region transcription start site region 76095
Tssr76096 8 4087559 to 4087570 11 + TSS region transcription start site region 76096
Gm16589 8 4087658 to 4088575 917 + pseudogene predicted gene 16589
Tssr76097 8 4087694 to 4087717 23 + TSS region transcription start site region 76097
Gm26750 8 4088149 to 4089166 1017 - lincRNA gene predicted gene, 26750
Tssr76098 8 4088192 to 4088211 19 + TSS region transcription start site region 76098
Tssr164692 8 4088400 to 4088422 22 + TSS region transcription start site region 164692
Cd209f 8 4102787 to 4105835 3048 - protein coding gene CD209f antigen
Tssr80240 8 4105758 to 4105767 9 - TSS region transcription start site region 80240
Gm23888 8 4115513 to 4115765 252 - unclassified non-coding RNA gene predicted gene, 23888
Cd209g 8 4134246 to 4137707 3461 + protein coding gene CD209g antigen
Tssr76099 8 4134718 to 4134725 7 + TSS region transcription start site region 76099
4932443L11Rik 8 4162372 to 4182115 19743 - antisense lncRNA gene RIKEN cDNA 4932443L11 gene
Cpgi20039 8 4166250 to 4167199 949 CpG island CpG island 20039
Evi5l 8 4166538 to 4208050 41512 + protein coding gene ecotropic viral integration site 5 like
Tssr76100 8 4166556 to 4166593 37 + TSS region transcription start site region 76100
Tssr76101 8 4172871 to 4172876 5 + TSS region transcription start site region 76101
Tssr76102 8 4181943 to 4181955 12 + TSS region transcription start site region 76102