Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:36207869-37257896

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lonrf1 8 36216064 to 36249516 33452 - protein coding gene LON peptidase N-terminal domain and ring finger 1
Tssr80948 8 36218665 to 36218697 32 - TSS region transcription start site region 80948
Tssr80949 8 36223112 to 36223115 3 - TSS region transcription start site region 80949
Gm39165 8 36226421 to 36228514 2093 + lncRNA gene predicted gene, 39165
Cpgi20264 8 36247728 to 36249811 2083 CpG island CpG island 20264
Gm35712 8 36247998 to 36315793 67795 + lncRNA gene predicted gene, 35712
Tssr80950 8 36248096 to 36248107 11 - TSS region transcription start site region 80950
Tssr76916 8 36248543 to 36248578 35 + TSS region transcription start site region 76916
Tssr2548 8 36248612 to 36248631 19 + TSS region transcription start site region 2548
Tssr80951 8 36249292 to 36249368 76 - TSS region transcription start site region 80951
Tssr76917 8 36249623 to 36249636 13 + TSS region transcription start site region 76917
Tssr80952 8 36265786 to 36265799 13 - TSS region transcription start site region 80952
Tssr80953 8 36280841 to 36280844 3 - TSS region transcription start site region 80953
Gm5787 8 36372596 to 36373633 1037 - pseudogene predicted gene 5787
Gm26150 8 36406094 to 36406244 150 - snRNA gene predicted gene, 26150
Gm19140 8 36450380 to 36450800 420 + pseudogene predicted gene, 19140
Trmt9b 8 36457286 to 36514569 57283 + protein coding gene tRNA methyltransferase 9B
Cpgi20265 8 36457394 to 36458483 1089 CpG island CpG island 20265
Tssr76918 8 36458080 to 36458093 13 + TSS region transcription start site region 76918
Tssr76919 8 36458095 to 36458108 13 + TSS region transcription start site region 76919
Tssr76920 8 36458110 to 36458159 49 + TSS region transcription start site region 76920
Tssr76921 8 36458161 to 36458206 45 + TSS region transcription start site region 76921
D8Mit225 8 36492709 to 36492808 99 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 225
Cpgi20266 8 36533145 to 36533358 213 CpG island CpG island 20266
Tssr76922 8 36538237 to 36538244 7 + TSS region transcription start site region 76922
Tssr80954 8 36547833 to 36547835 2 - TSS region transcription start site region 80954
Cpgi20267 8 36548898 to 36549432 534 CpG island CpG island 20267
Tssr76923 8 36549351 to 36549371 20 + TSS region transcription start site region 76923
Tssr76924 8 36549381 to 36549386 5 + TSS region transcription start site region 76924
Tssr76925 8 36549419 to 36549428 9 + TSS region transcription start site region 76925
Dlc1 8 36567751 to 36953143 385392 - protein coding gene deleted in liver cancer 1
Tssr80955 8 36568727 to 36568732 5 - TSS region transcription start site region 80955
Tssr80956 8 36570078 to 36570082 4 - TSS region transcription start site region 80956
Cpgi20268 8 36584593 to 36584931 338 CpG island CpG island 20268
Tssr80957 8 36586735 to 36586738 3 - TSS region transcription start site region 80957
Cpgi20269 8 36600793 to 36600957 164 CpG island CpG island 20269
Cpgi20270 8 36612757 to 36612952 195 CpG island CpG island 20270
Tssr80958 8 36612788 to 36612792 4 - TSS region transcription start site region 80958
Cpgi20271 8 36613296 to 36614232 936 CpG island CpG island 20271
Tssr80959 8 36613858 to 36613889 31 - TSS region transcription start site region 80959
Tssr80960 8 36613890 to 36613921 31 - TSS region transcription start site region 80960
Tssr80961 8 36613937 to 36613948 11 - TSS region transcription start site region 80961
D8Mit226 8 36631298 to 36631420 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 226
9530004P13Rik 8 36646993 to 36647964 971 unclassified non-coding RNA gene RIKEN cDNA 9530004P13 gene
Tssr80962 8 36669215 to 36669217 2 - TSS region transcription start site region 80962
D8Mit97 8 36699774 to 36699889 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 97
Tssr80963 8 36730811 to 36730818 7 - TSS region transcription start site region 80963
Tssr80964 8 36732100 to 36732116 16 - TSS region transcription start site region 80964
Tssr80965 8 36732136 to 36732147 11 - TSS region transcription start site region 80965
Cpgi20272 8 36732541 to 36733104 563 CpG island CpG island 20272
Tssr80966 8 36732789 to 36732863 74 - TSS region transcription start site region 80966
Tssr2549 8 36732869 to 36732896 27 - TSS region transcription start site region 2549
Tssr80967 8 36732897 to 36732908 11 - TSS region transcription start site region 80967
Tssr76926 8 36745111 to 36745135 24 + TSS region transcription start site region 76926
9430047G12Rik 8 36758820 to 36761678 2858 unclassified gene RIKEN cDNA 9430047G12 gene
Tssr80968 8 36816172 to 36816175 3 - TSS region transcription start site region 80968
Tssr80969 8 36827992 to 36828005 13 - TSS region transcription start site region 80969
Tssr80970 8 36828050 to 36828064 14 - TSS region transcription start site region 80970
Tssr80971 8 36952162 to 36952172 10 - TSS region transcription start site region 80971
Tssr80972 8 36952180 to 36952193 13 - TSS region transcription start site region 80972
Tssr80973 8 36952207 to 36952218 11 - TSS region transcription start site region 80973
Tssr80974 8 36952244 to 36952255 11 - TSS region transcription start site region 80974
Tssr80975 8 36952271 to 36952294 23 - TSS region transcription start site region 80975
Tssr80976 8 36952345 to 36952394 49 - TSS region transcription start site region 80976
Tssr80977 8 36952414 to 36952473 59 - TSS region transcription start site region 80977
Tssr80978 8 36953082 to 36953127 45 - TSS region transcription start site region 80978
Tssr80979 8 36953139 to 36953160 21 - TSS region transcription start site region 80979
Tssr80980 8 36953218 to 36953239 21 - TSS region transcription start site region 80980
Tssr80981 8 36953386 to 36953391 5 - TSS region transcription start site region 80981
Gm39166 8 36954740 to 36959348 4608 + lncRNA gene predicted gene, 39166
G630064G18Rik 8 36985573 to 37024238 38665 - antisense lncRNA gene RIKEN cDNA G630064G18 gene
Cpgi20273 8 36993526 to 36993771 245 CpG island CpG island 20273
Tssr76927 8 36993551 to 36993611 60 + TSS region transcription start site region 76927
AI429214 8 36993604 to 36995533 1929 + protein coding gene expressed sequence AI429214
Gm45690 8 37027093 to 37027338 245 + pseudogene predicted gene 45690
Gm10683 8 37088936 to 37090309 1373 - protein coding gene predicted gene 10683
Gm18267 8 37093318 to 37094468 1150 + pseudogene predicted gene, 18267
Gm8342 8 37094703 to 37095459 756 + pseudogene predicted gene 8342
Gm45524 8 37097018 to 37188061 91043 + lincRNA gene predicted gene 45524
Gm16530 8 37103795 to 37106002 2207 + pseudogene predicted gene, 16530
1700016D18Rik 8 37103795 to 37105507 1712 unclassified non-coding RNA gene RIKEN cDNA 1700016D18 gene
Gm3433 8 37103866 to 37106827 2961 + pseudogene predicted gene 3433
Gm7319 8 37154715 to 37155808 1093 + pseudogene predicted gene 7319
Gm45523 8 37183218 to 37184232 1014 - pseudogene predicted gene 45523
Gm45522 8 37250821 to 37250986 165 + pseudogene predicted gene 45522