Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:3558733-4918767

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285 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr76058 8 3567958 to 3568006 48 + TSS region transcription start site region 76058
C330021F23Rik 8 3567998 to 3584776 16778 + protein coding gene RIKEN cDNA C330021F23 gene
Rps23-ps2 8 3583799 to 3584230 431 - pseudogene ribosomal protein S23, pseudogene 2
Cpgi20028 8 3587296 to 3588514 1218 CpG island CpG island 20028
Camsap3 8 3587299 to 3609075 21776 + protein coding gene calmodulin regulated spectrin-associated protein family, member 3
Tssr76059 8 3587445 to 3587487 42 + TSS region transcription start site region 76059
Tssr76060 8 3587610 to 3587637 27 + TSS region transcription start site region 76060
Tssr76061 8 3587640 to 3587687 47 + TSS region transcription start site region 76061
Tssr76062 8 3587697 to 3587711 14 + TSS region transcription start site region 76062
Tssr76063 8 3587784 to 3587802 18 + TSS region transcription start site region 76063
Tssr76064 8 3596520 to 3596524 4 + TSS region transcription start site region 76064
Tssr76065 8 3598315 to 3598325 10 + TSS region transcription start site region 76065
Tssr76066 8 3598339 to 3598349 10 + TSS region transcription start site region 76066
Tssr76067 8 3598354 to 3598369 15 + TSS region transcription start site region 76067
Tssr76068 8 3598371 to 3598401 30 + TSS region transcription start site region 76068
Tssr76069 8 3598443 to 3598454 11 + TSS region transcription start site region 76069
Tssr76070 8 3598593 to 3598614 21 + TSS region transcription start site region 76070
Tssr76071 8 3598642 to 3598671 29 + TSS region transcription start site region 76071
Tssr76072 8 3599521 to 3599571 50 + TSS region transcription start site region 76072
Tssr76073 8 3600651 to 3600683 32 + TSS region transcription start site region 76073
Tssr76074 8 3603364 to 3603406 42 + TSS region transcription start site region 76074
Xab2 8 3610089 to 3621335 11246 - protein coding gene XPA binding protein 2
Gm22204 8 3615529 to 3615855 326 + unclassified non-coding RNA gene predicted gene, 22204
Cpgi20029 8 3621170 to 3621719 549 CpG island CpG island 20029
Tssr80202 8 3621283 to 3621323 40 - TSS region transcription start site region 80202
Tssr76075 8 3621479 to 3621493 14 + TSS region transcription start site region 76075
Tssr76076 8 3621529 to 3621583 54 + TSS region transcription start site region 76076
Pet100 8 3621551 to 3624235 2684 + protein coding gene PET100 homolog
Tssr76077 8 3621600 to 3621609 9 + TSS region transcription start site region 76077
Pcp2 8 3623371 to 3625545 2174 - protein coding gene Purkinje cell protein 2 (L7)
Tssr80203 8 3623510 to 3623557 47 - TSS region transcription start site region 80203
Tssr80204 8 3624569 to 3624577 8 - TSS region transcription start site region 80204
Tssr80205 8 3624659 to 3624667 8 - TSS region transcription start site region 80205
Tssr80206 8 3624921 to 3624926 5 - TSS region transcription start site region 80206
Tssr80207 8 3624970 to 3624983 13 - TSS region transcription start site region 80207
Tssr80208 8 3624989 to 3625014 25 - TSS region transcription start site region 80208
Tssr80209 8 3625025 to 3625042 17 - TSS region transcription start site region 80209
Tssr80210 8 3625206 to 3625212 6 - TSS region transcription start site region 80210
Tssr80211 8 3625246 to 3625253 7 - TSS region transcription start site region 80211
Tssr80212 8 3625274 to 3625288 14 - TSS region transcription start site region 80212
Tssr80213 8 3625289 to 3625297 8 - TSS region transcription start site region 80213
Tssr80214 8 3625541 to 3625548 7 - TSS region transcription start site region 80214
Tssr80215 8 3625578 to 3625580 2 - TSS region transcription start site region 80215
Cpgi20030 8 3630713 to 3631377 664 CpG island CpG island 20030
Stxbp2 8 3630960 to 3643644 12684 + protein coding gene syntaxin binding protein 2
Tssr76078 8 3631109 to 3631169 60 + TSS region transcription start site region 76078
Tssr76079 8 3640713 to 3640746 33 + TSS region transcription start site region 76079
Tssr80216 8 3645957 to 3645988 31 - TSS region transcription start site region 80216
Tssr76080 8 3648620 to 3648648 28 + TSS region transcription start site region 76080
Tssr76081 8 3655762 to 3655781 19 + TSS region transcription start site region 76081
Retn 8 3655770 to 3659818 4048 + protein coding gene resistin
Tssr76082 8 3655802 to 3655813 11 + TSS region transcription start site region 76082
Tssr80217 8 3659024 to 3659046 22 - TSS region transcription start site region 80217
Tssr76083 8 3659767 to 3659769 2 + TSS region transcription start site region 76083
Gm44776 8 3660599 to 3660979 380 - pseudogene predicted gene 44776
Tssr2480 8 3664519 to 3664569 50 - TSS region transcription start site region 2480
Tssr76084 8 3664746 to 3664783 37 + TSS region transcription start site region 76084
Tssr80218 8 3665621 to 3665655 34 - TSS region transcription start site region 80218
Tssr76085 8 3665747 to 3665763 16 + TSS region transcription start site region 76085
Mcemp1 8 3665762 to 3668905 3143 + protein coding gene mast cell expressed membrane protein 1
Tssr76086 8 3665773 to 3665784 11 + TSS region transcription start site region 76086
Tssr76087 8 3665958 to 3665968 10 + TSS region transcription start site region 76087
Tssr80219 8 3670523 to 3670526 3 - TSS region transcription start site region 80219
Fcor 8 3671188 to 3672362 1174 - protein coding gene Foxo1 corepressor
Cpgi20031 8 3672024 to 3672524 500 CpG island CpG island 20031
Tssr80220 8 3672290 to 3672364 74 - TSS region transcription start site region 80220
Gm39121 8 3672430 to 3672954 524 + lincRNA gene predicted gene, 39121
Gm45231 8 3674020 to 3676312 2292 - antisense lncRNA gene predicted gene 45231
Cpgi20032 8 3676181 to 3676914 733 CpG island CpG island 20032
Tssr76088 8 3676457 to 3676501 44 + TSS region transcription start site region 76088
Trappc5 8 3676477 to 3680921 4444 + protein coding gene trafficking protein particle complex 5
Tssr76089 8 3676503 to 3676547 44 + TSS region transcription start site region 76089
Tssr76090 8 3676562 to 3676573 11 + TSS region transcription start site region 76090
Cpgi20033 8 3678943 to 3679588 645 CpG island CpG island 20033
Fcer2a 8 3681737 to 3694175 12438 - protein coding gene Fc receptor, IgE, low affinity II, alpha polypeptide
Tssr80221 8 3685317 to 3685322 5 - TSS region transcription start site region 80221
Tssr80222 8 3694167 to 3694183 16 - TSS region transcription start site region 80222
Clec4g 8 3707064 to 3720651 13587 - protein coding gene C-type lectin domain family 4, member g
Gm16553 8 3709804 to 3739044 29240 + antisense lncRNA gene predicted gene 16553
Tssr2481 8 3711461 to 3711466 5 + TSS region transcription start site region 2481
Tssr80223 8 3717547 to 3717558 11 - TSS region transcription start site region 80223
Tssr80224 8 3717562 to 3717582 20 - TSS region transcription start site region 80224
Cpgi20034 8 3718625 to 3718900 275 CpG island CpG island 20034
Tssr80225 8 3720640 to 3720682 42 - TSS region transcription start site region 80225
Tssr80226 8 3720798 to 3720817 19 - TSS region transcription start site region 80226
Gm23886 8 3728925 to 3729237 312 - unclassified non-coding RNA gene predicted gene, 23886
Cd209a 8 3743397 to 3748984 5587 - protein coding gene CD209a antigen
Tssr80227 8 3748922 to 3748935 13 - TSS region transcription start site region 80227
Tssr80228 8 3748941 to 3748953 12 - TSS region transcription start site region 80228
Cpgi20035 8 3754396 to 3754558 162 CpG island CpG island 20035
Tssr80229 8 3754474 to 3754491 17 - TSS region transcription start site region 80229
Tssr80230 8 3754546 to 3754555 9 - TSS region transcription start site region 80230
Tssr80231 8 3754721 to 3754747 26 - TSS region transcription start site region 80231
Tssr80232 8 3754748 to 3754765 17 - TSS region transcription start site region 80232
Gm24934 8 3781020 to 3781130 110 + miRNA gene predicted gene, 24934
Rprl3 8 3803069 to 3803358 289 - RNase P RNA gene ribonuclease P RNA-like 3
Tssr80233 8 3803318 to 3803347 29 - TSS region transcription start site region 80233
Tssr80234 8 3803352 to 3803362 10 - TSS region transcription start site region 80234
Gm7381 8 3842096 to 3842395 299 - pseudogene predicted gene 7381
Cd209e 8 3847973 to 3854286 6313 - protein coding gene CD209e antigen
Cd209d 8 3871824 to 3878548 6724 - protein coding gene CD209d antigen
Tssr80235 8 3878549 to 3878568 19 - TSS region transcription start site region 80235
Cd209b 8 3917655 to 3926841 9186 - protein coding gene CD209b antigen
Tssr80236 8 3918216 to 3918219 3 - TSS region transcription start site region 80236
Tssr80237 8 3926807 to 3926838 31 - TSS region transcription start site region 80237
Cd209c 8 3940221 to 3954731 14510 - protein coding gene CD209c antigen
Gm39122 8 3965712 to 3969482 3770 - lncRNA gene predicted gene, 39122
Cpgi20036 8 3994140 to 3994576 436 CpG island CpG island 20036
Gm7389 8 3994626 to 3997506 2880 + pseudogene predicted gene 7389
Tssr76091 8 3995021 to 3995024 3 + TSS region transcription start site region 76091
Cpgi20037 8 3996633 to 3997103 470 CpG island CpG island 20037
Gm45048 8 4016454 to 4016882 428 - pseudogene predicted gene 45048
Gm7397 8 4018992 to 4021471 2479 + pseudogene predicted gene 7397
Gm45049 8 4034157 to 4034747 590 - pseudogene predicted gene 45049
Gm7407 8 4039857 to 4040421 564 - pseudogene predicted gene 7407
Tssr80238 8 4040490 to 4040508 18 - TSS region transcription start site region 80238
Tssr76092 8 4087217 to 4087226 9 + TSS region transcription start site region 76092
Cpgi20038 8 4087224 to 4087757 533 CpG island CpG island 20038
Tssr80239 8 4087380 to 4087437 57 - TSS region transcription start site region 80239
Tssr76093 8 4087445 to 4087454 9 + TSS region transcription start site region 76093
Tssr76094 8 4087463 to 4087525 62 + TSS region transcription start site region 76094
Tssr76095 8 4087528 to 4087551 23 + TSS region transcription start site region 76095
Tssr76096 8 4087559 to 4087570 11 + TSS region transcription start site region 76096
Gm16589 8 4087658 to 4088575 917 + pseudogene predicted gene 16589
Tssr76097 8 4087694 to 4087717 23 + TSS region transcription start site region 76097
Gm26750 8 4088149 to 4089166 1017 - lincRNA gene predicted gene, 26750
Tssr76098 8 4088192 to 4088211 19 + TSS region transcription start site region 76098
Tssr164692 8 4088400 to 4088422 22 + TSS region transcription start site region 164692
Cd209f 8 4102787 to 4105835 3048 - protein coding gene CD209f antigen
Tssr80240 8 4105758 to 4105767 9 - TSS region transcription start site region 80240
Gm23888 8 4115513 to 4115765 252 - unclassified non-coding RNA gene predicted gene, 23888
Cd209g 8 4134246 to 4137707 3461 + protein coding gene CD209g antigen
Tssr76099 8 4134718 to 4134725 7 + TSS region transcription start site region 76099
4932443L11Rik 8 4162372 to 4182115 19743 - antisense lncRNA gene RIKEN cDNA 4932443L11 gene
Cpgi20039 8 4166250 to 4167199 949 CpG island CpG island 20039
Evi5l 8 4166538 to 4208050 41512 + protein coding gene ecotropic viral integration site 5 like
Tssr76100 8 4166556 to 4166593 37 + TSS region transcription start site region 76100
Tssr76101 8 4172871 to 4172876 5 + TSS region transcription start site region 76101
Tssr76102 8 4181943 to 4181955 12 + TSS region transcription start site region 76102
Cpgi20040 8 4193277 to 4193516 239 CpG island CpG island 20040
Cpgi20041 8 4205395 to 4206953 1558 CpG island CpG island 20041
Prr36 8 4209543 to 4217459 7916 - protein coding gene proline rich 36
Cpgi20042 8 4210586 to 4210758 172 CpG island CpG island 20042
Cpgi20043 8 4212905 to 4213056 151 CpG island CpG island 20043
Tssr80241 8 4213452 to 4213463 11 - TSS region transcription start site region 80241
Tssr80242 8 4213480 to 4213540 60 - TSS region transcription start site region 80242
Tssr80243 8 4213566 to 4213579 13 - TSS region transcription start site region 80243
Tssr80244 8 4213735 to 4213750 15 - TSS region transcription start site region 80244
Cpgi20044 8 4213753 to 4214228 475 CpG island CpG island 20044
Tssr80245 8 4214085 to 4214096 11 - TSS region transcription start site region 80245
Tssr80246 8 4214117 to 4214128 11 - TSS region transcription start site region 80246
Tssr80247 8 4214288 to 4214303 15 - TSS region transcription start site region 80247
Tssr80248 8 4214343 to 4214357 14 - TSS region transcription start site region 80248
Tssr80249 8 4214368 to 4214380 12 - TSS region transcription start site region 80249
Tssr80250 8 4214466 to 4214485 19 - TSS region transcription start site region 80250
Tssr80251 8 4214555 to 4214583 28 - TSS region transcription start site region 80251
Cpgi20045 8 4214555 to 4214955 400 CpG island CpG island 20045
Tssr80252 8 4214613 to 4214624 11 - TSS region transcription start site region 80252
Tssr80253 8 4214717 to 4214730 13 - TSS region transcription start site region 80253
Tssr80254 8 4214777 to 4214790 13 - TSS region transcription start site region 80254
Tssr80255 8 4216005 to 4216011 6 - TSS region transcription start site region 80255
Cpgi20046 8 4216355 to 4217443 1088 CpG island CpG island 20046
Tssr80256 8 4216979 to 4217003 24 - TSS region transcription start site region 80256
Tssr80257 8 4217018 to 4217043 25 - TSS region transcription start site region 80257
Tssr80258 8 4217113 to 4217126 13 - TSS region transcription start site region 80258
Tssr80259 8 4217133 to 4217168 35 - TSS region transcription start site region 80259
Tssr80260 8 4217179 to 4217252 73 - TSS region transcription start site region 80260
Tssr80261 8 4217261 to 4217301 40 - TSS region transcription start site region 80261
Tssr80262 8 4217466 to 4217503 37 - TSS region transcription start site region 80262
Cpgi20047 8 4226647 to 4227124 477 CpG island CpG island 20047
Lrrc8e 8 4226827 to 4237470 10643 + protein coding gene leucine rich repeat containing 8 family, member E
Tssr76103 8 4226903 to 4226922 19 + TSS region transcription start site region 76103
Tssr76104 8 4226925 to 4226963 38 + TSS region transcription start site region 76104
Cpgi20048 8 4238115 to 4239387 1272 CpG island CpG island 20048
Tssr76105 8 4238733 to 4238767 34 + TSS region transcription start site region 76105
Map2k7 8 4238740 to 4247897 9157 + protein coding gene mitogen-activated protein kinase kinase 7
Tssr76106 8 4238815 to 4238886 71 + TSS region transcription start site region 76106
Gm49320 8 4238865 to 4251423 12558 + protein coding gene predicted gene, 49320
Tssr76107 8 4239098 to 4239107 9 + TSS region transcription start site region 76107
Tssr76108 8 4240128 to 4240148 20 + TSS region transcription start site region 76108
Tssr76109 8 4243367 to 4243387 20 + TSS region transcription start site region 76109
Tssr76110 8 4248188 to 4248219 31 + TSS region transcription start site region 76110
Tgfbr3l 8 4248214 to 4251423 3209 + protein coding gene transforming growth factor, beta receptor III-like
Tssr76111 8 4248223 to 4248241 18 + TSS region transcription start site region 76111
Tssr76112 8 4248248 to 4248267 19 + TSS region transcription start site region 76112
Cpgi20049 8 4249267 to 4249824 557 CpG island CpG island 20049
Tssr76113 8 4249457 to 4249459 2 + TSS region transcription start site region 76113
Tssr76114 8 4250307 to 4250319 12 + TSS region transcription start site region 76114
Cpgi20050 8 4250340 to 4250721 381 CpG island CpG island 20050
Tssr76115 8 4250433 to 4250444 11 + TSS region transcription start site region 76115
Cpgi20051 8 4252798 to 4253854 1056 CpG island CpG island 20051
Tssr76116 8 4253067 to 4253128 61 + TSS region transcription start site region 76116
Snapc2 8 4253102 to 4256220 3118 + protein coding gene small nuclear RNA activating complex, polypeptide 2
Tssr76117 8 4253130 to 4253136 6 + TSS region transcription start site region 76117
Ctxn1 8 4257660 to 4259274 1614 - protein coding gene cortexin 1
Tssr76118 8 4257763 to 4257803 40 + TSS region transcription start site region 76118
Cpgi20052 8 4258166 to 4259648 1482 CpG island CpG island 20052
Tssr80263 8 4258176 to 4258220 44 - TSS region transcription start site region 80263
Tssr80264 8 4258248 to 4258279 31 - TSS region transcription start site region 80264
Tssr80265 8 4258297 to 4258313 16 - TSS region transcription start site region 80265