Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:35315347-36337103

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34705 8 35348589 to 35367831 19242 - lncRNA gene predicted gene, 34705
Gm45469 8 35367750 to 35376392 8642 - bidirectional promoter lncRNA gene predicted gene 45469
Gm39161 8 35367857 to 35373295 5438 - lncRNA gene predicted gene, 39161
Cpgi20254 8 35375474 to 35376836 1362 CpG island CpG island 20254
Tssr76893 8 35375719 to 35375766 47 + TSS region transcription start site region 76893
Ppp1r3b 8 35375739 to 35388139 12400 + protein coding gene protein phosphatase 1, regulatory subunit 3B
Tssr76894 8 35375768 to 35375787 19 + TSS region transcription start site region 76894
Tssr76895 8 35376645 to 35376668 23 + TSS region transcription start site region 76895
Tssr76896 8 35376680 to 35376696 16 + TSS region transcription start site region 76896
Cpgi20255 8 35384184 to 35384737 553 CpG island CpG island 20255
Tssr80934 8 35394209 to 35394216 7 - TSS region transcription start site region 80934
Tssr2547 8 35400509 to 35400525 16 - TSS region transcription start site region 2547
Gm45301 8 35407471 to 35409506 2035 - lincRNA gene predicted gene 45301
Gm34911 8 35410285 to 35415504 5219 - lncRNA gene predicted gene, 34911
Tssr80935 8 35415390 to 35415424 34 - TSS region transcription start site region 80935
Tssr80936 8 35430746 to 35430764 18 - TSS region transcription start site region 80936
Tssr76897 8 35439347 to 35439353 6 + TSS region transcription start site region 76897
Gm34853 8 35439734 to 35443698 3964 + lincRNA gene predicted gene, 34853
Eri1 8 35465265 to 35495533 30268 - protein coding gene exoribonuclease 1
Tssr80937 8 35480559 to 35480564 5 - TSS region transcription start site region 80937
Cpgi20256 8 35494678 to 35495924 1246 CpG island CpG island 20256
Tssr76898 8 35495295 to 35495296 1 + TSS region transcription start site region 76898
Tssr80938 8 35495487 to 35495545 58 - TSS region transcription start site region 80938
Gm39162 8 35518396 to 35535312 16916 - lncRNA gene predicted gene, 39162
C030008P14Rik 8 35578976 to 35580073 1097 unclassified gene RIKEN cDNA C030008P14 gene
Gm16793 8 35582503 to 35588972 6469 - bidirectional promoter lncRNA gene predicted gene, 16793
Cpgi20257 8 35587451 to 35590491 3040 CpG island CpG island 20257
Tssr76899 8 35587780 to 35587825 45 + TSS region transcription start site region 76899
Mfhas1 8 35587798 to 35679449 91651 + protein coding gene malignant fibrous histiocytoma amplified sequence 1
Tssr76900 8 35587828 to 35587850 22 + TSS region transcription start site region 76900
Tssr80939 8 35588993 to 35589004 11 - TSS region transcription start site region 80939
Tssr80940 8 35589012 to 35589037 25 - TSS region transcription start site region 80940
Tssr76901 8 35602155 to 35602159 4 + TSS region transcription start site region 76901
Tssr76902 8 35602914 to 35602920 6 + TSS region transcription start site region 76902
D8Mit1002 8 35618916 to 35619231 315 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 1002
Tssr76903 8 35620794 to 35620798 4 + TSS region transcription start site region 76903
Tssr76904 8 35672359 to 35672366 7 + TSS region transcription start site region 76904
Cpgi20258 8 35707969 to 35708239 270 CpG island CpG island 20258
1700015I17Rik 8 35707991 to 35719504 11513 - lincRNA gene RIKEN cDNA 1700015I17 gene
Tssr76905 8 35723661 to 35723680 19 + TSS region transcription start site region 76905
Gm35021 8 35724175 to 35757517 33342 + lncRNA gene predicted gene, 35021
Gm40492 8 35727683 to 35729206 1523 - lncRNA gene predicted gene, 40492
Gm22216 8 35747449 to 35747562 113 + rRNA gene predicted gene, 22216
Gm44474 8 35763930 to 35764056 126 - miRNA gene predicted gene, 44474
Cpgi20259 8 35765534 to 35766135 601 CpG island CpG island 20259
Tssr76906 8 35765717 to 35765736 19 + TSS region transcription start site region 76906
Gm19410 8 35765790 to 35818047 52257 + protein coding gene predicted gene, 19410
Gm45566 8 35800686 to 35801853 1167 - pseudogene predicted gene 45566
Cldn23 8 35824712 to 35826559 1847 - protein coding gene claudin 23
Cpgi20260 8 35825347 to 35827103 1756 CpG island CpG island 20260
Tssr80941 8 35826421 to 35826430 9 - TSS region transcription start site region 80941
Tssr80942 8 35826435 to 35826485 50 - TSS region transcription start site region 80942
5430403N17Rik 8 35864085 to 35882957 18872 - lincRNA gene RIKEN cDNA 5430403N17 gene
Gm22030 8 35977516 to 35977578 62 - miRNA gene predicted gene, 22030
Cd8ts2 8 35987864 to 35987996 132 QTL CD8 T cell subset 2
D8Mit190 8 35987864 to 35987996 132 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 190
Eae14 8 35987864 to 35987996 132 QTL experimental allergic encephalomyelitis susceptibility 14
Tssr76907 8 35999861 to 35999867 6 + TSS region transcription start site region 76907
Tssr76908 8 36025667 to 36025678 11 + TSS region transcription start site region 76908
Rps12-ps24 8 36025753 to 36026133 380 + pseudogene ribosomal protein S12, pseudogene 24
Gm39163 8 36066346 to 36073607 7261 + lncRNA gene predicted gene, 39163
Cpgi20261 8 36094257 to 36095497 1240 CpG island CpG island 20261
Tssr76909 8 36094682 to 36094705 23 + TSS region transcription start site region 76909
Tssr76910 8 36094708 to 36094720 12 + TSS region transcription start site region 76910
Prag1 8 36094828 to 36147787 52959 + protein coding gene PEAK1 related kinase activating pseudokinase 1
Tssr76911 8 36094853 to 36094868 15 + TSS region transcription start site region 76911
Tssr76912 8 36094884 to 36094895 11 + TSS region transcription start site region 76912
3010031K01Rik 8 36096191 to 36096986 795 unclassified gene RIKEN cDNA 3010031K01 gene
Tssr80943 8 36096693 to 36096699 6 - TSS region transcription start site region 80943
Cpgi20262 8 36103063 to 36103447 384 CpG island CpG island 20262
D8Dcr8 8 36129588 to 36129693 105 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 8
Cpgi20263 8 36146374 to 36147395 1021 CpG island CpG island 20263
Gm38414 8 36156010 to 36161392 5382 + lincRNA gene predicted gene, 38414
Capsq4 8 36163000 to 92728652 56565652 QTL capsaicin sensitivity related QTL 4
D8Mit293 8 36163000 to 36163119 119 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 293
Tssr76913 8 36168940 to 36168981 41 + TSS region transcription start site region 76913
Tssr80944 8 36172983 to 36172994 11 - TSS region transcription start site region 80944
Gm39164 8 36174140 to 36176047 1907 - lincRNA gene predicted gene, 39164
Tssr80945 8 36176031 to 36176039 8 - TSS region transcription start site region 80945
Tssr80946 8 36176041 to 36176051 10 - TSS region transcription start site region 80946
4933430A20Rik 8 36176141 to 36178423 2282 + lincRNA gene RIKEN cDNA 4933430A20 gene
Tssr76914 8 36181796 to 36181800 4 + TSS region transcription start site region 76914
Tssr80947 8 36182276 to 36182301 25 - TSS region transcription start site region 80947
Gm35520 8 36188372 to 36202020 13648 + lincRNA gene predicted gene, 35520
Tssr76915 8 36188585 to 36188635 50 + TSS region transcription start site region 76915
Lonrf1 8 36216064 to 36249516 33452 - protein coding gene LON peptidase N-terminal domain and ring finger 1
Tssr80948 8 36218665 to 36218697 32 - TSS region transcription start site region 80948
Tssr80949 8 36223112 to 36223115 3 - TSS region transcription start site region 80949
Gm39165 8 36226421 to 36228514 2093 + lncRNA gene predicted gene, 39165
Cpgi20264 8 36247728 to 36249811 2083 CpG island CpG island 20264
Gm35712 8 36247998 to 36315793 67795 + lncRNA gene predicted gene, 35712
Tssr80950 8 36248096 to 36248107 11 - TSS region transcription start site region 80950
Tssr76916 8 36248543 to 36248578 35 + TSS region transcription start site region 76916
Tssr2548 8 36248612 to 36248631 19 + TSS region transcription start site region 2548
Tssr80951 8 36249292 to 36249368 76 - TSS region transcription start site region 80951
Tssr76917 8 36249623 to 36249636 13 + TSS region transcription start site region 76917
Tssr80952 8 36265786 to 36265799 13 - TSS region transcription start site region 80952
Tssr80953 8 36280841 to 36280844 3 - TSS region transcription start site region 80953