Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:34915474-35836836

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnks 8 34829179 to 34965690 136511 - protein coding gene tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
Tssr80921 8 34918493 to 34918502 9 - TSS region transcription start site region 80921
Tssr80922 8 34918522 to 34918537 15 - TSS region transcription start site region 80922
Tssr80923 8 34918550 to 34918579 29 - TSS region transcription start site region 80923
Cpgi20253 8 34964800 to 34966020 1220 CpG island CpG island 20253
Gm9939 8 34965052 to 34967727 2675 + bidirectional promoter lncRNA gene predicted gene 9939
Tssr80924 8 34965425 to 34965436 11 - TSS region transcription start site region 80924
Tssr80925 8 34965589 to 34965601 12 - TSS region transcription start site region 80925
Tssr80926 8 34965631 to 34965714 83 - TSS region transcription start site region 80926
Gm34368 8 34967274 to 34979874 12600 - lincRNA gene predicted gene, 34368
Tssr80927 8 34979898 to 34979910 12 - TSS region transcription start site region 80927
Gm8291 8 35052123 to 35053383 1260 - pseudogene predicted gene 8291
Tssr80928 8 35053433 to 35053444 11 - TSS region transcription start site region 80928
Tssr2545 8 35061978 to 35061980 2 + TSS region transcription start site region 2545
1700123E06Rik 8 35094538 to 35095241 703 unclassified gene RIKEN cDNA 1700123E06 gene
Gm34419 8 35094545 to 35105029 10484 + lincRNA gene predicted gene, 34419
Tssr80929 8 35095211 to 35095215 4 - TSS region transcription start site region 80929
Rpl31-ps23 8 35133176 to 35133532 356 - pseudogene ribosomal protein L31, pseudogene 23
Gm45626 8 35150086 to 35150446 360 - pseudogene predicted gene 45626
Gm45625 8 35179103 to 35183886 4783 - lincRNA gene predicted gene 45625
Tssr76890 8 35206539 to 35206542 3 + TSS region transcription start site region 76890
Tssr80930 8 35208444 to 35208456 12 - TSS region transcription start site region 80930
Tssr76891 8 35208771 to 35208781 10 + TSS region transcription start site region 76891
Tssr2546 8 35209120 to 35209143 23 - TSS region transcription start site region 2546
Tssr76892 8 35216527 to 35216533 6 + TSS region transcription start site region 76892
Gm34474 8 35218640 to 35222068 3428 + lincRNA gene predicted gene, 34474
Gm34533 8 35222941 to 35226035 3094 + lincRNA gene predicted gene, 34533
Gm34597 8 35233303 to 35245479 12176 - lincRNA gene predicted gene, 34597
Gm34647 8 35249761 to 35261735 11974 - lncRNA gene predicted gene, 34647
Tssr80931 8 35250687 to 35250704 17 - TSS region transcription start site region 80931
Tssr80932 8 35250705 to 35250713 8 - TSS region transcription start site region 80932
Tssr80933 8 35261423 to 35261463 40 - TSS region transcription start site region 80933
Gm34705 8 35348589 to 35367831 19242 - lncRNA gene predicted gene, 34705
Gm45469 8 35367750 to 35376392 8642 - bidirectional promoter lncRNA gene predicted gene 45469
Gm39161 8 35367857 to 35373295 5438 - lncRNA gene predicted gene, 39161
Cpgi20254 8 35375474 to 35376836 1362 CpG island CpG island 20254
Tssr76893 8 35375719 to 35375766 47 + TSS region transcription start site region 76893
Ppp1r3b 8 35375739 to 35388139 12400 + protein coding gene protein phosphatase 1, regulatory subunit 3B
Tssr76894 8 35375768 to 35375787 19 + TSS region transcription start site region 76894
Tssr76895 8 35376645 to 35376668 23 + TSS region transcription start site region 76895
Tssr76896 8 35376680 to 35376696 16 + TSS region transcription start site region 76896
Cpgi20255 8 35384184 to 35384737 553 CpG island CpG island 20255
Tssr80934 8 35394209 to 35394216 7 - TSS region transcription start site region 80934
Tssr2547 8 35400509 to 35400525 16 - TSS region transcription start site region 2547
Gm45301 8 35407471 to 35409506 2035 - lincRNA gene predicted gene 45301
Gm34911 8 35410285 to 35415504 5219 - lncRNA gene predicted gene, 34911
Tssr80935 8 35415390 to 35415424 34 - TSS region transcription start site region 80935
Tssr80936 8 35430746 to 35430764 18 - TSS region transcription start site region 80936
Tssr76897 8 35439347 to 35439353 6 + TSS region transcription start site region 76897
Gm34853 8 35439734 to 35443698 3964 + lincRNA gene predicted gene, 34853
Eri1 8 35465265 to 35495533 30268 - protein coding gene exoribonuclease 1
Tssr80937 8 35480559 to 35480564 5 - TSS region transcription start site region 80937
Cpgi20256 8 35494678 to 35495924 1246 CpG island CpG island 20256
Tssr76898 8 35495295 to 35495296 1 + TSS region transcription start site region 76898
Tssr80938 8 35495487 to 35495545 58 - TSS region transcription start site region 80938
Gm39162 8 35518396 to 35535312 16916 - lncRNA gene predicted gene, 39162
C030008P14Rik 8 35578976 to 35580073 1097 unclassified gene RIKEN cDNA C030008P14 gene
Gm16793 8 35582503 to 35588972 6469 - bidirectional promoter lncRNA gene predicted gene, 16793
Cpgi20257 8 35587451 to 35590491 3040 CpG island CpG island 20257
Tssr76899 8 35587780 to 35587825 45 + TSS region transcription start site region 76899
Mfhas1 8 35587798 to 35679449 91651 + protein coding gene malignant fibrous histiocytoma amplified sequence 1
Tssr76900 8 35587828 to 35587850 22 + TSS region transcription start site region 76900
Tssr80939 8 35588993 to 35589004 11 - TSS region transcription start site region 80939
Tssr80940 8 35589012 to 35589037 25 - TSS region transcription start site region 80940
Tssr76901 8 35602155 to 35602159 4 + TSS region transcription start site region 76901
Tssr76902 8 35602914 to 35602920 6 + TSS region transcription start site region 76902
D8Mit1002 8 35618916 to 35619231 315 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 1002
Tssr76903 8 35620794 to 35620798 4 + TSS region transcription start site region 76903
Tssr76904 8 35672359 to 35672366 7 + TSS region transcription start site region 76904
Cpgi20258 8 35707969 to 35708239 270 CpG island CpG island 20258
1700015I17Rik 8 35707991 to 35719504 11513 - lincRNA gene RIKEN cDNA 1700015I17 gene
Tssr76905 8 35723661 to 35723680 19 + TSS region transcription start site region 76905
Gm35021 8 35724175 to 35757517 33342 + lncRNA gene predicted gene, 35021
Gm40492 8 35727683 to 35729206 1523 - lncRNA gene predicted gene, 40492
Gm22216 8 35747449 to 35747562 113 + rRNA gene predicted gene, 22216
Gm44474 8 35763930 to 35764056 126 - miRNA gene predicted gene, 44474
Cpgi20259 8 35765534 to 35766135 601 CpG island CpG island 20259
Tssr76906 8 35765717 to 35765736 19 + TSS region transcription start site region 76906
Gm19410 8 35765790 to 35818047 52257 + protein coding gene predicted gene, 19410
Gm45566 8 35800686 to 35801853 1167 - pseudogene predicted gene 45566
Cldn23 8 35824712 to 35826559 1847 - protein coding gene claudin 23
Cpgi20260 8 35825347 to 35827103 1756 CpG island CpG island 20260
Tssr80941 8 35826421 to 35826430 9 - TSS region transcription start site region 80941
Tssr80942 8 35826435 to 35826485 50 - TSS region transcription start site region 80942