Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:34352613-35262615

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc42 8 13397210 to 34854071 21456861 QTL susceptibility to lung cancer 42
Gripgtt2 8 32020000 to 34520000 2500000 QTL glucose response to intraperitoneal glucose tolerance test 2, females only
Gm45350 8 34344696 to 34362842 18146 - lincRNA gene predicted gene 45350
Cpgi20246 8 34372413 to 34372599 186 CpG island CpG island 20246
Gm33831 8 34380544 to 34385828 5284 - lincRNA gene predicted gene, 33831
Gm33910 8 34419204 to 34437622 18418 - lncRNA gene predicted gene, 33910
Gm45349 8 34419237 to 34472995 53758 - lincRNA gene predicted gene 45349
Gm39159 8 34440726 to 34455836 15110 + lncRNA gene predicted gene, 39159
Cpgi20247 8 34455534 to 34455702 168 CpG island CpG island 20247
Gm46038 8 34456918 to 34488105 31187 + lncRNA gene predicted gene, 46038
Gm39160 8 34462682 to 34472999 10317 - lncRNA gene predicted gene, 39160
Gm40489 8 34488965 to 34492650 3685 + lncRNA gene predicted gene, 40489
Tssr76871 8 34507158 to 34507171 13 + TSS region transcription start site region 76871
Gm8268 8 34507207 to 34507664 457 + pseudogene predicted gene 8268
Gm33968 8 34523318 to 34526628 3310 + lincRNA gene predicted gene, 33968
Tssr80909 8 34529093 to 34529102 9 - TSS region transcription start site region 80909
Tssr80910 8 34529103 to 34529111 8 - TSS region transcription start site region 80910
4930507A01Rik 8 34583024 to 34584492 1468 unclassified gene RIKEN cDNA 4930507A01 gene
Gm46068 8 34583456 to 34585026 1570 - lncRNA gene predicted gene, 46068
B930018H19Rik 8 34589420 to 34640316 50896 - lincRNA gene RIKEN cDNA B930018H19 gene
Tssr76872 8 34608273 to 34608311 38 + TSS region transcription start site region 76872
Gm34096 8 34608305 to 34619429 11124 + lincRNA gene predicted gene, 34096
Tssr76873 8 34622453 to 34622458 5 + TSS region transcription start site region 76873
Tssr80911 8 34622970 to 34622976 6 - TSS region transcription start site region 80911
Tssr76874 8 34623007 to 34623051 44 + TSS region transcription start site region 76874
Tssr76875 8 34623536 to 34623542 6 + TSS region transcription start site region 76875
Mnif1 8 34642776 to 44852835 10210059 QTL macronutrient intake, fat 1
D8Mit24 8 34642776 to 34642953 177 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 24
Scc8 8 34642953 to 7162499 -27480454 QTL colon tumor susceptibility 8
Gm45627 8 34658106 to 34659369 1263 - lincRNA gene predicted gene 45627
Gm46069 8 34688679 to 34690159 1480 - lncRNA gene predicted gene, 46069
Cpgi20248 8 34689555 to 34689811 256 CpG island CpG island 20248
Tssr80912 8 34689880 to 34689906 26 - TSS region transcription start site region 80912
Tssr80913 8 34759056 to 34759060 4 - TSS region transcription start site region 80913
Tssr76876 8 34760873 to 34760876 3 + TSS region transcription start site region 76876
Tssr80914 8 34764906 to 34764924 18 - TSS region transcription start site region 80914
D8Mit292 8 34785013 to 34785087 74 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 292
Cpgi20249 8 34804841 to 34805483 642 CpG island CpG island 20249
Tssr76877 8 34804923 to 34804938 15 + TSS region transcription start site region 76877
Tssr76878 8 34805058 to 34805067 9 + TSS region transcription start site region 76878
Tssr76879 8 34805458 to 34805473 15 + TSS region transcription start site region 76879
Cpgi20250 8 34805795 to 34806079 284 CpG island CpG island 20250
Cpgi20251 8 34806681 to 34810114 3433 CpG island CpG island 20251
Tssr80915 8 34807050 to 34807061 11 - TSS region transcription start site region 80915
Tssr80916 8 34807071 to 34807085 14 - TSS region transcription start site region 80916
Tssr80917 8 34807100 to 34807122 22 - TSS region transcription start site region 80917
Tssr76880 8 34807287 to 34807310 23 + TSS region transcription start site region 76880
Tssr76881 8 34807314 to 34807350 36 + TSS region transcription start site region 76881
Dusp4 8 34807610 to 34819894 12284 + protein coding gene dual specificity phosphatase 4
Tssr76882 8 34807613 to 34807615 2 + TSS region transcription start site region 76882
Tssr76883 8 34809532 to 34809535 3 + TSS region transcription start site region 76883
Gm9648 8 34809533 to 34810408 875 unclassified gene predicted gene 9648
Tssr76884 8 34815386 to 34815399 13 + TSS region transcription start site region 76884
Cpgi20252 8 34818366 to 34818715 349 CpG island CpG island 20252
Tssr76885 8 34818655 to 34818677 22 + TSS region transcription start site region 76885
Tssr76886 8 34820127 to 34820142 15 + TSS region transcription start site region 76886
Tssr76887 8 34821461 to 34821481 20 + TSS region transcription start site region 76887
Tssr76888 8 34821528 to 34821547 19 + TSS region transcription start site region 76888
Tssr76889 8 34821560 to 34821582 22 + TSS region transcription start site region 76889
Tnks 8 34829179 to 34965690 136511 - protein coding gene tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
Fembrs2 8 34853943 to 34854071 128 QTL femur breaking strength 2
D8Mit125 8 34853943 to 34854071 128 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 125
Lmr10b 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10b
Lmr10 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10
Lmr10a 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10a
Lmr10c 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10c
Tssr80918 8 34869762 to 34869769 7 - TSS region transcription start site region 80918
Tssr80919 8 34890617 to 34890667 50 - TSS region transcription start site region 80919
Tssr80920 8 34890668 to 34890719 51 - TSS region transcription start site region 80920
Tssr80921 8 34918493 to 34918502 9 - TSS region transcription start site region 80921
Tssr80922 8 34918522 to 34918537 15 - TSS region transcription start site region 80922
Tssr80923 8 34918550 to 34918579 29 - TSS region transcription start site region 80923
Cpgi20253 8 34964800 to 34966020 1220 CpG island CpG island 20253
Gm9939 8 34965052 to 34967727 2675 + bidirectional promoter lncRNA gene predicted gene 9939
Tssr80924 8 34965425 to 34965436 11 - TSS region transcription start site region 80924
Tssr80925 8 34965589 to 34965601 12 - TSS region transcription start site region 80925
Tssr80926 8 34965631 to 34965714 83 - TSS region transcription start site region 80926
Gm34368 8 34967274 to 34979874 12600 - lincRNA gene predicted gene, 34368
Tssr80927 8 34979898 to 34979910 12 - TSS region transcription start site region 80927
Gm8291 8 35052123 to 35053383 1260 - pseudogene predicted gene 8291
Tssr80928 8 35053433 to 35053444 11 - TSS region transcription start site region 80928
Tssr2545 8 35061978 to 35061980 2 + TSS region transcription start site region 2545
1700123E06Rik 8 35094538 to 35095241 703 unclassified gene RIKEN cDNA 1700123E06 gene
Gm34419 8 35094545 to 35105029 10484 + lincRNA gene predicted gene, 34419
Tssr80929 8 35095211 to 35095215 4 - TSS region transcription start site region 80929
Rpl31-ps23 8 35133176 to 35133532 356 - pseudogene ribosomal protein L31, pseudogene 23
Gm45626 8 35150086 to 35150446 360 - pseudogene predicted gene 45626
Gm45625 8 35179103 to 35183886 4783 - lincRNA gene predicted gene 45625
Tssr76890 8 35206539 to 35206542 3 + TSS region transcription start site region 76890
Tssr80930 8 35208444 to 35208456 12 - TSS region transcription start site region 80930
Tssr76891 8 35208771 to 35208781 10 + TSS region transcription start site region 76891
Tssr2546 8 35209120 to 35209143 23 - TSS region transcription start site region 2546
Tssr76892 8 35216527 to 35216533 6 + TSS region transcription start site region 76892
Gm34474 8 35218640 to 35222068 3428 + lincRNA gene predicted gene, 34474
Gm34533 8 35222941 to 35226035 3094 + lincRNA gene predicted gene, 34533
Gm34597 8 35233303 to 35245479 12176 - lincRNA gene predicted gene, 34597
Gm34647 8 35249761 to 35261735 11974 - lncRNA gene predicted gene, 34647
Tssr80931 8 35250687 to 35250704 17 - TSS region transcription start site region 80931
Tssr80932 8 35250705 to 35250713 8 - TSS region transcription start site region 80932
Tssr80933 8 35261423 to 35261463 40 - TSS region transcription start site region 80933
Eae31 8 114837007 to 34642776 -80194231 QTL experimental allergic encephalomyelitis susceptibility 31