Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:3390038-3611156

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A430078G23Rik 8 3353415 to 3390299 36884 + protein coding gene RIKEN cDNA A430078G23 gene
Cpgi20017 8 3392839 to 3393352 513 CpG island CpG island 20017
Tssr76040 8 3392997 to 3393015 18 + TSS region transcription start site region 76040
Arhgef18 8 3393006 to 3456601 63595 + protein coding gene rho/rac guanine nucleotide exchange factor (GEF) 18
Tssr76041 8 3393018 to 3393053 35 + TSS region transcription start site region 76041
Gm46029 8 3425566 to 3427342 1776 - lncRNA gene predicted gene, 46029
Cpgi20018 8 3451750 to 3452198 448 CpG island CpG island 20018
Pex11g 8 3457105 to 3467680 10575 - protein coding gene peroxisomal biogenesis factor 11 gamma
Gm44775 8 3458039 to 3459494 1455 + unclassified gene predicted gene 44775
Cpgi20019 8 3467520 to 3467875 355 CpG island CpG island 20019
Tssr80200 8 3467617 to 3467662 45 - TSS region transcription start site region 80200
Tssr80201 8 3467707 to 3467714 7 - TSS region transcription start site region 80201
Tssr76042 8 3470813 to 3470823 10 + TSS region transcription start site region 76042
Tssr76043 8 3470841 to 3470858 17 + TSS region transcription start site region 76043
Tex45 8 3470862 to 3487181 16319 + protein coding gene testis expressed 45
Cpgi20020 8 3475843 to 3476476 633 CpG island CpG island 20020
Tssr76044 8 3482488 to 3482496 8 + TSS region transcription start site region 76044
Cpgi20021 8 3482549 to 3482759 210 CpG island CpG island 20021
Tssr76045 8 3485728 to 3485737 9 + TSS region transcription start site region 76045
Cpgi20022 8 3492765 to 3493639 874 CpG island CpG island 20022
Tssr76046 8 3493135 to 3493212 77 + TSS region transcription start site region 76046
Zfp358 8 3493138 to 3497208 4070 + protein coding gene zinc finger protein 358
Tssr2479 8 3493218 to 3493237 19 + TSS region transcription start site region 2479
Cpgi20023 8 3495591 to 3496690 1099 CpG island CpG island 20023
Cpgi20024 8 3500038 to 3501156 1118 CpG island CpG island 20024
Tssr76047 8 3500451 to 3500524 73 + TSS region transcription start site region 76047
Mcoln1 8 3500519 to 3515232 14713 + protein coding gene mucolipin 1
Tssr76048 8 3500530 to 3500548 18 + TSS region transcription start site region 76048
Tssr76049 8 3509160 to 3509173 13 + TSS region transcription start site region 76049
Cpgi20025 8 3515153 to 3516025 872 CpG island CpG island 20025
Tssr76050 8 3515378 to 3515397 19 + TSS region transcription start site region 76050
Pnpla6 8 3515384 to 3544267 28883 + protein coding gene patatin-like phospholipase domain containing 6
Tssr76051 8 3515402 to 3515418 16 + TSS region transcription start site region 76051
Tssr76052 8 3515635 to 3515641 6 + TSS region transcription start site region 76052
Cpgi20026 8 3516402 to 3517260 858 CpG island CpG island 20026
Tssr76053 8 3516839 to 3516903 64 + TSS region transcription start site region 76053
Tssr76054 8 3516918 to 3516932 14 + TSS region transcription start site region 76054
Tssr76055 8 3516939 to 3516951 12 + TSS region transcription start site region 76055
Tssr76056 8 3522580 to 3522591 11 + TSS region transcription start site region 76056
Cpgi20027 8 3532010 to 3532300 290 CpG island CpG island 20027
Tssr76057 8 3536818 to 3536825 7 + TSS region transcription start site region 76057
Tssr76058 8 3567958 to 3568006 48 + TSS region transcription start site region 76058
C330021F23Rik 8 3567998 to 3584776 16778 + protein coding gene RIKEN cDNA C330021F23 gene
Rps23-ps2 8 3583799 to 3584230 431 - pseudogene ribosomal protein S23, pseudogene 2
Cpgi20028 8 3587296 to 3588514 1218 CpG island CpG island 20028
Camsap3 8 3587299 to 3609075 21776 + protein coding gene calmodulin regulated spectrin-associated protein family, member 3
Tssr76059 8 3587445 to 3587487 42 + TSS region transcription start site region 76059
Tssr76060 8 3587610 to 3587637 27 + TSS region transcription start site region 76060
Tssr76061 8 3587640 to 3587687 47 + TSS region transcription start site region 76061
Tssr76062 8 3587697 to 3587711 14 + TSS region transcription start site region 76062
Tssr76063 8 3587784 to 3587802 18 + TSS region transcription start site region 76063
Tssr76064 8 3596520 to 3596524 4 + TSS region transcription start site region 76064
Tssr76065 8 3598315 to 3598325 10 + TSS region transcription start site region 76065
Tssr76066 8 3598339 to 3598349 10 + TSS region transcription start site region 76066
Tssr76067 8 3598354 to 3598369 15 + TSS region transcription start site region 76067
Tssr76068 8 3598371 to 3598401 30 + TSS region transcription start site region 76068
Tssr76069 8 3598443 to 3598454 11 + TSS region transcription start site region 76069
Tssr76070 8 3598593 to 3598614 21 + TSS region transcription start site region 76070
Tssr76071 8 3598642 to 3598671 29 + TSS region transcription start site region 76071
Tssr76072 8 3599521 to 3599571 50 + TSS region transcription start site region 76072
Tssr76073 8 3600651 to 3600683 32 + TSS region transcription start site region 76073
Tssr76074 8 3603364 to 3603406 42 + TSS region transcription start site region 76074
Xab2 8 3610089 to 3621335 11246 - protein coding gene XPA binding protein 2