Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:33738166-34118768

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2e2 8 33731914 to 33777173 45259 + protein coding gene general transcription factor II E, polypeptide 2 (beta subunit)
Smim18 8 33742112 to 33747770 5658 - protein coding gene small integral membrane protein 18
Tssr80858 8 33747724 to 33747781 57 - TSS region transcription start site region 80858
Tssr76853 8 33764858 to 33764886 28 + TSS region transcription start site region 76853
Rbpms 8 33782643 to 33929863 147220 - protein coding gene RNA binding protein gene with multiple splicing
Tssr80859 8 33801685 to 33801688 3 - TSS region transcription start site region 80859
Tssr80860 8 33806742 to 33806783 41 - TSS region transcription start site region 80860
Tssr80861 8 33806860 to 33806885 25 - TSS region transcription start site region 80861
Gm26632 8 33813203 to 33833094 19891 + antisense lncRNA gene predicted gene, 26632
Tssr80862 8 33826172 to 33826175 3 - TSS region transcription start site region 80862
Tssr80863 8 33832350 to 33832355 5 - TSS region transcription start site region 80863
Cpgi20239 8 33833337 to 33833745 408 CpG island CpG island 20239
Tssr80864 8 33834422 to 33834459 37 - TSS region transcription start site region 80864
Tssr80865 8 33843545 to 33843556 11 - TSS region transcription start site region 80865
Tssr80866 8 33843562 to 33843573 11 - TSS region transcription start site region 80866
Tssr2542 8 33844774 to 33844811 37 - TSS region transcription start site region 2542
Tssr80867 8 33844897 to 33844911 14 - TSS region transcription start site region 80867
Tssr80868 8 33844915 to 33844922 7 - TSS region transcription start site region 80868
D8Mit258 8 33848892 to 33848977 85 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 258
Tssr80869 8 33853693 to 33853702 9 - TSS region transcription start site region 80869
Tssr80870 8 33862536 to 33862540 4 - TSS region transcription start site region 80870
Tssr80871 8 33863029 to 33863051 22 - TSS region transcription start site region 80871
Gm26978 8 33884774 to 33885747 973 - sense intronic lncRNA gene predicted gene, 26978
Tssr80872 8 33886750 to 33886752 2 - TSS region transcription start site region 80872
Tssr80873 8 33902581 to 33902586 5 - TSS region transcription start site region 80873
Tssr76854 8 33913365 to 33913409 44 + TSS region transcription start site region 76854
Tssr80874 8 33914200 to 33914239 39 - TSS region transcription start site region 80874
Tssr76855 8 33914368 to 33914378 10 + TSS region transcription start site region 76855
Tssr80875 8 33914587 to 33914590 3 - TSS region transcription start site region 80875
Tssr80876 8 33916139 to 33916148 9 - TSS region transcription start site region 80876
Tssr80877 8 33916411 to 33916415 4 - TSS region transcription start site region 80877
Tssr80878 8 33916846 to 33916851 5 - TSS region transcription start site region 80878
Tssr80879 8 33917302 to 33917322 20 - TSS region transcription start site region 80879
Tssr80880 8 33927471 to 33927474 3 - TSS region transcription start site region 80880
9530006C21Rik 8 33928166 to 33928768 602 unclassified gene RIKEN cDNA 9530006C21 gene
Cpgi20240 8 33929103 to 33930700 1597 CpG island CpG island 20240
Tssr80881 8 33929798 to 33929816 18 - TSS region transcription start site region 80881
Tssr80882 8 33929933 to 33929977 44 - TSS region transcription start site region 80882
Tssr80883 8 33929978 to 33930009 31 - TSS region transcription start site region 80883
Tssr76856 8 33964210 to 33964258 48 + TSS region transcription start site region 76856
Gm33588 8 33964213 to 33974504 10291 + lncRNA gene predicted gene, 33588
Gm45817 8 33985444 to 33987200 1756 - unclassified gene predicted gene 45817
Gm39157 8 33987509 to 33989596 2087 + lincRNA gene predicted gene, 39157
Tssr76857 8 33990258 to 33990278 20 + TSS region transcription start site region 76857
Gm40487 8 34045172 to 34064659 19487 + lncRNA gene predicted gene, 40487
Tssr80884 8 34048948 to 34048955 7 - TSS region transcription start site region 80884
Gm9951 8 34049262 to 34057046 7784 + lincRNA gene predicted gene 9951
Gm40486 8 34052489 to 34055877 3388 - lncRNA gene predicted gene, 40486
Tssr76858 8 34054634 to 34054647 13 + TSS region transcription start site region 76858
Tssr2543 8 34055868 to 34055877 9 - TSS region transcription start site region 2543
Tssr80885 8 34055898 to 34055909 11 - TSS region transcription start site region 80885
Tssr76859 8 34080773 to 34080802 29 + TSS region transcription start site region 76859
Dctn6 8 34090420 to 34108712 18292 - protein coding gene dynactin 6
Tssr80886 8 34093161 to 34093172 11 - TSS region transcription start site region 80886
Tssr80887 8 34094349 to 34094378 29 - TSS region transcription start site region 80887
Gm26768 8 34094548 to 34096149 1601 + lincRNA gene predicted gene, 26768
Tssr80888 8 34097292 to 34097372 80 - TSS region transcription start site region 80888
Tssr80889 8 34107762 to 34107789 27 - TSS region transcription start site region 80889
Tssr80890 8 34107816 to 34107842 26 - TSS region transcription start site region 80890
Cpgi20241 8 34108115 to 34108855 740 CpG island CpG island 20241
Tssr80891 8 34108443 to 34108488 45 - TSS region transcription start site region 80891
Tssr80892 8 34108511 to 34108522 11 - TSS region transcription start site region 80892
Tssr80893 8 34108792 to 34108809 17 - TSS region transcription start site region 80893
Gm10131 8 34111002 to 34111737 735 - pseudogene predicted pseudogene 10131
Tssr80894 8 34111726 to 34111738 12 - TSS region transcription start site region 80894
Mboat4 8 34115030 to 34125182 10152 + protein coding gene membrane bound O-acyltransferase domain containing 4