Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:3370089-3861335

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A430078G23Rik 8 3353415 to 3390299 36884 + protein coding gene RIKEN cDNA A430078G23 gene
Cpgi20017 8 3392839 to 3393352 513 CpG island CpG island 20017
Tssr76040 8 3392997 to 3393015 18 + TSS region transcription start site region 76040
Arhgef18 8 3393006 to 3456601 63595 + protein coding gene rho/rac guanine nucleotide exchange factor (GEF) 18
Tssr76041 8 3393018 to 3393053 35 + TSS region transcription start site region 76041
Gm46029 8 3425566 to 3427342 1776 - lncRNA gene predicted gene, 46029
Cpgi20018 8 3451750 to 3452198 448 CpG island CpG island 20018
Pex11g 8 3457105 to 3467680 10575 - protein coding gene peroxisomal biogenesis factor 11 gamma
Gm44775 8 3458039 to 3459494 1455 + unclassified gene predicted gene 44775
Cpgi20019 8 3467520 to 3467875 355 CpG island CpG island 20019
Tssr80200 8 3467617 to 3467662 45 - TSS region transcription start site region 80200
Tssr80201 8 3467707 to 3467714 7 - TSS region transcription start site region 80201
Tssr76042 8 3470813 to 3470823 10 + TSS region transcription start site region 76042
Tssr76043 8 3470841 to 3470858 17 + TSS region transcription start site region 76043
Tex45 8 3470862 to 3487181 16319 + protein coding gene testis expressed 45
Cpgi20020 8 3475843 to 3476476 633 CpG island CpG island 20020
Tssr76044 8 3482488 to 3482496 8 + TSS region transcription start site region 76044
Cpgi20021 8 3482549 to 3482759 210 CpG island CpG island 20021
Tssr76045 8 3485728 to 3485737 9 + TSS region transcription start site region 76045
Cpgi20022 8 3492765 to 3493639 874 CpG island CpG island 20022
Tssr76046 8 3493135 to 3493212 77 + TSS region transcription start site region 76046
Zfp358 8 3493138 to 3497208 4070 + protein coding gene zinc finger protein 358
Tssr2479 8 3493218 to 3493237 19 + TSS region transcription start site region 2479
Cpgi20023 8 3495591 to 3496690 1099 CpG island CpG island 20023
Cpgi20024 8 3500038 to 3501156 1118 CpG island CpG island 20024
Tssr76047 8 3500451 to 3500524 73 + TSS region transcription start site region 76047
Mcoln1 8 3500519 to 3515232 14713 + protein coding gene mucolipin 1
Tssr76048 8 3500530 to 3500548 18 + TSS region transcription start site region 76048
Tssr76049 8 3509160 to 3509173 13 + TSS region transcription start site region 76049
Cpgi20025 8 3515153 to 3516025 872 CpG island CpG island 20025
Tssr76050 8 3515378 to 3515397 19 + TSS region transcription start site region 76050
Pnpla6 8 3515384 to 3544267 28883 + protein coding gene patatin-like phospholipase domain containing 6
Tssr76051 8 3515402 to 3515418 16 + TSS region transcription start site region 76051
Tssr76052 8 3515635 to 3515641 6 + TSS region transcription start site region 76052
Cpgi20026 8 3516402 to 3517260 858 CpG island CpG island 20026
Tssr76053 8 3516839 to 3516903 64 + TSS region transcription start site region 76053
Tssr76054 8 3516918 to 3516932 14 + TSS region transcription start site region 76054
Tssr76055 8 3516939 to 3516951 12 + TSS region transcription start site region 76055
Tssr76056 8 3522580 to 3522591 11 + TSS region transcription start site region 76056
Cpgi20027 8 3532010 to 3532300 290 CpG island CpG island 20027
Tssr76057 8 3536818 to 3536825 7 + TSS region transcription start site region 76057
Tssr76058 8 3567958 to 3568006 48 + TSS region transcription start site region 76058
C330021F23Rik 8 3567998 to 3584776 16778 + protein coding gene RIKEN cDNA C330021F23 gene
Rps23-ps2 8 3583799 to 3584230 431 - pseudogene ribosomal protein S23, pseudogene 2
Cpgi20028 8 3587296 to 3588514 1218 CpG island CpG island 20028
Camsap3 8 3587299 to 3609075 21776 + protein coding gene calmodulin regulated spectrin-associated protein family, member 3
Tssr76059 8 3587445 to 3587487 42 + TSS region transcription start site region 76059
Tssr76060 8 3587610 to 3587637 27 + TSS region transcription start site region 76060
Tssr76061 8 3587640 to 3587687 47 + TSS region transcription start site region 76061
Tssr76062 8 3587697 to 3587711 14 + TSS region transcription start site region 76062
Tssr76063 8 3587784 to 3587802 18 + TSS region transcription start site region 76063
Tssr76064 8 3596520 to 3596524 4 + TSS region transcription start site region 76064
Tssr76065 8 3598315 to 3598325 10 + TSS region transcription start site region 76065
Tssr76066 8 3598339 to 3598349 10 + TSS region transcription start site region 76066
Tssr76067 8 3598354 to 3598369 15 + TSS region transcription start site region 76067
Tssr76068 8 3598371 to 3598401 30 + TSS region transcription start site region 76068
Tssr76069 8 3598443 to 3598454 11 + TSS region transcription start site region 76069
Tssr76070 8 3598593 to 3598614 21 + TSS region transcription start site region 76070
Tssr76071 8 3598642 to 3598671 29 + TSS region transcription start site region 76071
Tssr76072 8 3599521 to 3599571 50 + TSS region transcription start site region 76072
Tssr76073 8 3600651 to 3600683 32 + TSS region transcription start site region 76073
Tssr76074 8 3603364 to 3603406 42 + TSS region transcription start site region 76074
Xab2 8 3610089 to 3621335 11246 - protein coding gene XPA binding protein 2
Gm22204 8 3615529 to 3615855 326 + unclassified non-coding RNA gene predicted gene, 22204
Cpgi20029 8 3621170 to 3621719 549 CpG island CpG island 20029
Tssr80202 8 3621283 to 3621323 40 - TSS region transcription start site region 80202
Tssr76075 8 3621479 to 3621493 14 + TSS region transcription start site region 76075
Tssr76076 8 3621529 to 3621583 54 + TSS region transcription start site region 76076
Pet100 8 3621551 to 3624235 2684 + protein coding gene PET100 homolog
Tssr76077 8 3621600 to 3621609 9 + TSS region transcription start site region 76077
Pcp2 8 3623371 to 3625545 2174 - protein coding gene Purkinje cell protein 2 (L7)
Tssr80203 8 3623510 to 3623557 47 - TSS region transcription start site region 80203
Tssr80204 8 3624569 to 3624577 8 - TSS region transcription start site region 80204
Tssr80205 8 3624659 to 3624667 8 - TSS region transcription start site region 80205
Tssr80206 8 3624921 to 3624926 5 - TSS region transcription start site region 80206
Tssr80207 8 3624970 to 3624983 13 - TSS region transcription start site region 80207
Tssr80208 8 3624989 to 3625014 25 - TSS region transcription start site region 80208
Tssr80209 8 3625025 to 3625042 17 - TSS region transcription start site region 80209
Tssr80210 8 3625206 to 3625212 6 - TSS region transcription start site region 80210
Tssr80211 8 3625246 to 3625253 7 - TSS region transcription start site region 80211
Tssr80212 8 3625274 to 3625288 14 - TSS region transcription start site region 80212
Tssr80213 8 3625289 to 3625297 8 - TSS region transcription start site region 80213
Tssr80214 8 3625541 to 3625548 7 - TSS region transcription start site region 80214
Tssr80215 8 3625578 to 3625580 2 - TSS region transcription start site region 80215
Cpgi20030 8 3630713 to 3631377 664 CpG island CpG island 20030
Stxbp2 8 3630960 to 3643644 12684 + protein coding gene syntaxin binding protein 2
Tssr76078 8 3631109 to 3631169 60 + TSS region transcription start site region 76078
Tssr76079 8 3640713 to 3640746 33 + TSS region transcription start site region 76079
Tssr80216 8 3645957 to 3645988 31 - TSS region transcription start site region 80216
Tssr76080 8 3648620 to 3648648 28 + TSS region transcription start site region 76080
Tssr76081 8 3655762 to 3655781 19 + TSS region transcription start site region 76081
Retn 8 3655770 to 3659818 4048 + protein coding gene resistin
Tssr76082 8 3655802 to 3655813 11 + TSS region transcription start site region 76082
Tssr80217 8 3659024 to 3659046 22 - TSS region transcription start site region 80217
Tssr76083 8 3659767 to 3659769 2 + TSS region transcription start site region 76083
Gm44776 8 3660599 to 3660979 380 - pseudogene predicted gene 44776
Tssr2480 8 3664519 to 3664569 50 - TSS region transcription start site region 2480
Tssr76084 8 3664746 to 3664783 37 + TSS region transcription start site region 76084
Tssr80218 8 3665621 to 3665655 34 - TSS region transcription start site region 80218
Tssr76085 8 3665747 to 3665763 16 + TSS region transcription start site region 76085
Mcemp1 8 3665762 to 3668905 3143 + protein coding gene mast cell expressed membrane protein 1
Tssr76086 8 3665773 to 3665784 11 + TSS region transcription start site region 76086
Tssr76087 8 3665958 to 3665968 10 + TSS region transcription start site region 76087
Tssr80219 8 3670523 to 3670526 3 - TSS region transcription start site region 80219
Fcor 8 3671188 to 3672362 1174 - protein coding gene Foxo1 corepressor
Cpgi20031 8 3672024 to 3672524 500 CpG island CpG island 20031
Tssr80220 8 3672290 to 3672364 74 - TSS region transcription start site region 80220
Gm39121 8 3672430 to 3672954 524 + lincRNA gene predicted gene, 39121
Gm45231 8 3674020 to 3676312 2292 - antisense lncRNA gene predicted gene 45231
Cpgi20032 8 3676181 to 3676914 733 CpG island CpG island 20032
Tssr76088 8 3676457 to 3676501 44 + TSS region transcription start site region 76088
Trappc5 8 3676477 to 3680921 4444 + protein coding gene trafficking protein particle complex 5
Tssr76089 8 3676503 to 3676547 44 + TSS region transcription start site region 76089
Tssr76090 8 3676562 to 3676573 11 + TSS region transcription start site region 76090
Cpgi20033 8 3678943 to 3679588 645 CpG island CpG island 20033
Fcer2a 8 3681737 to 3694175 12438 - protein coding gene Fc receptor, IgE, low affinity II, alpha polypeptide
Tssr80221 8 3685317 to 3685322 5 - TSS region transcription start site region 80221
Tssr80222 8 3694167 to 3694183 16 - TSS region transcription start site region 80222
Clec4g 8 3707064 to 3720651 13587 - protein coding gene C-type lectin domain family 4, member g
Gm16553 8 3709804 to 3739044 29240 + antisense lncRNA gene predicted gene 16553
Tssr2481 8 3711461 to 3711466 5 + TSS region transcription start site region 2481
Tssr80223 8 3717547 to 3717558 11 - TSS region transcription start site region 80223
Tssr80224 8 3717562 to 3717582 20 - TSS region transcription start site region 80224
Cpgi20034 8 3718625 to 3718900 275 CpG island CpG island 20034
Tssr80225 8 3720640 to 3720682 42 - TSS region transcription start site region 80225
Tssr80226 8 3720798 to 3720817 19 - TSS region transcription start site region 80226
Gm23886 8 3728925 to 3729237 312 - unclassified non-coding RNA gene predicted gene, 23886
Cd209a 8 3743397 to 3748984 5587 - protein coding gene CD209a antigen
Tssr80227 8 3748922 to 3748935 13 - TSS region transcription start site region 80227
Tssr80228 8 3748941 to 3748953 12 - TSS region transcription start site region 80228
Cpgi20035 8 3754396 to 3754558 162 CpG island CpG island 20035
Tssr80229 8 3754474 to 3754491 17 - TSS region transcription start site region 80229
Tssr80230 8 3754546 to 3754555 9 - TSS region transcription start site region 80230
Tssr80231 8 3754721 to 3754747 26 - TSS region transcription start site region 80231
Tssr80232 8 3754748 to 3754765 17 - TSS region transcription start site region 80232
Gm24934 8 3781020 to 3781130 110 + miRNA gene predicted gene, 24934
Rprl3 8 3803069 to 3803358 289 - RNase P RNA gene ribonuclease P RNA-like 3
Tssr80233 8 3803318 to 3803347 29 - TSS region transcription start site region 80233
Tssr80234 8 3803352 to 3803362 10 - TSS region transcription start site region 80234
Gm7381 8 3842096 to 3842395 299 - pseudogene predicted gene 7381
Cd209e 8 3847973 to 3854286 6313 - protein coding gene CD209e antigen