Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:33693161-34493172

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vent1 8 31341658 to 34276410 2934752 QTL ventricular size 1
Gsr 8 33653238 to 33698162 44924 + protein coding gene glutathione reductase
Tssr76842 8 33694602 to 33694606 4 + TSS region transcription start site region 76842
Tssr76843 8 33697139 to 33697154 15 + TSS region transcription start site region 76843
Tssr76844 8 33697162 to 33697177 15 + TSS region transcription start site region 76844
Tssr76845 8 33697291 to 33697330 39 + TSS region transcription start site region 76845
Tssr76846 8 33697459 to 33697488 29 + TSS region transcription start site region 76846
Tssr76847 8 33697673 to 33697705 32 + TSS region transcription start site region 76847
Gm40485 8 33701775 to 33709143 7368 - lncRNA gene predicted gene, 40485
1700104B16Rik 8 33730534 to 33731819 1285 - lincRNA gene RIKEN cDNA 1700104B16 gene
Cpgi20238 8 33731536 to 33732741 1205 CpG island CpG island 20238
Tssr80856 8 33731764 to 33731785 21 - TSS region transcription start site region 80856
Tssr80857 8 33731793 to 33731823 30 - TSS region transcription start site region 80857
Tssr76848 8 33731867 to 33731946 79 + TSS region transcription start site region 76848
Gtf2e2 8 33731914 to 33777173 45259 + protein coding gene general transcription factor II E, polypeptide 2 (beta subunit)
Tssr76849 8 33732049 to 33732137 88 + TSS region transcription start site region 76849
Tssr76850 8 33732187 to 33732188 1 + TSS region transcription start site region 76850
Tssr76851 8 33732196 to 33732236 40 + TSS region transcription start site region 76851
Tssr76852 8 33732237 to 33732247 10 + TSS region transcription start site region 76852
Smim18 8 33742112 to 33747770 5658 - protein coding gene small integral membrane protein 18
Tssr80858 8 33747724 to 33747781 57 - TSS region transcription start site region 80858
Tssr76853 8 33764858 to 33764886 28 + TSS region transcription start site region 76853
Rbpms 8 33782643 to 33929863 147220 - protein coding gene RNA binding protein gene with multiple splicing
Tssr80859 8 33801685 to 33801688 3 - TSS region transcription start site region 80859
Tssr80860 8 33806742 to 33806783 41 - TSS region transcription start site region 80860
Tssr80861 8 33806860 to 33806885 25 - TSS region transcription start site region 80861
Gm26632 8 33813203 to 33833094 19891 + antisense lncRNA gene predicted gene, 26632
Tssr80862 8 33826172 to 33826175 3 - TSS region transcription start site region 80862
Tssr80863 8 33832350 to 33832355 5 - TSS region transcription start site region 80863
Cpgi20239 8 33833337 to 33833745 408 CpG island CpG island 20239
Tssr80864 8 33834422 to 33834459 37 - TSS region transcription start site region 80864
Tssr80865 8 33843545 to 33843556 11 - TSS region transcription start site region 80865
Tssr80866 8 33843562 to 33843573 11 - TSS region transcription start site region 80866
Tssr2542 8 33844774 to 33844811 37 - TSS region transcription start site region 2542
Tssr80867 8 33844897 to 33844911 14 - TSS region transcription start site region 80867
Tssr80868 8 33844915 to 33844922 7 - TSS region transcription start site region 80868
D8Mit258 8 33848892 to 33848977 85 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 258
Tssr80869 8 33853693 to 33853702 9 - TSS region transcription start site region 80869
Tssr80870 8 33862536 to 33862540 4 - TSS region transcription start site region 80870
Tssr80871 8 33863029 to 33863051 22 - TSS region transcription start site region 80871
Gm26978 8 33884774 to 33885747 973 - sense intronic lncRNA gene predicted gene, 26978
Tssr80872 8 33886750 to 33886752 2 - TSS region transcription start site region 80872
Tssr80873 8 33902581 to 33902586 5 - TSS region transcription start site region 80873
Tssr76854 8 33913365 to 33913409 44 + TSS region transcription start site region 76854
Tssr80874 8 33914200 to 33914239 39 - TSS region transcription start site region 80874
Tssr76855 8 33914368 to 33914378 10 + TSS region transcription start site region 76855
Tssr80875 8 33914587 to 33914590 3 - TSS region transcription start site region 80875
Tssr80876 8 33916139 to 33916148 9 - TSS region transcription start site region 80876
Tssr80877 8 33916411 to 33916415 4 - TSS region transcription start site region 80877
Tssr80878 8 33916846 to 33916851 5 - TSS region transcription start site region 80878
Tssr80879 8 33917302 to 33917322 20 - TSS region transcription start site region 80879
Tssr80880 8 33927471 to 33927474 3 - TSS region transcription start site region 80880
9530006C21Rik 8 33928166 to 33928768 602 unclassified gene RIKEN cDNA 9530006C21 gene
Cpgi20240 8 33929103 to 33930700 1597 CpG island CpG island 20240
Tssr80881 8 33929798 to 33929816 18 - TSS region transcription start site region 80881
Tssr80882 8 33929933 to 33929977 44 - TSS region transcription start site region 80882
Tssr80883 8 33929978 to 33930009 31 - TSS region transcription start site region 80883
Tssr76856 8 33964210 to 33964258 48 + TSS region transcription start site region 76856
Gm33588 8 33964213 to 33974504 10291 + lncRNA gene predicted gene, 33588
Gm45817 8 33985444 to 33987200 1756 - unclassified gene predicted gene 45817
Gm39157 8 33987509 to 33989596 2087 + lincRNA gene predicted gene, 39157
Tssr76857 8 33990258 to 33990278 20 + TSS region transcription start site region 76857
Gm40487 8 34045172 to 34064659 19487 + lncRNA gene predicted gene, 40487
Tssr80884 8 34048948 to 34048955 7 - TSS region transcription start site region 80884
Gm9951 8 34049262 to 34057046 7784 + lincRNA gene predicted gene 9951
Gm40486 8 34052489 to 34055877 3388 - lncRNA gene predicted gene, 40486
Tssr76858 8 34054634 to 34054647 13 + TSS region transcription start site region 76858
Tssr2543 8 34055868 to 34055877 9 - TSS region transcription start site region 2543
Tssr80885 8 34055898 to 34055909 11 - TSS region transcription start site region 80885
Tssr76859 8 34080773 to 34080802 29 + TSS region transcription start site region 76859
Dctn6 8 34090420 to 34108712 18292 - protein coding gene dynactin 6
Tssr80886 8 34093161 to 34093172 11 - TSS region transcription start site region 80886
Tssr80887 8 34094349 to 34094378 29 - TSS region transcription start site region 80887
Gm26768 8 34094548 to 34096149 1601 + lincRNA gene predicted gene, 26768
Tssr80888 8 34097292 to 34097372 80 - TSS region transcription start site region 80888
Tssr80889 8 34107762 to 34107789 27 - TSS region transcription start site region 80889
Tssr80890 8 34107816 to 34107842 26 - TSS region transcription start site region 80890
Cpgi20241 8 34108115 to 34108855 740 CpG island CpG island 20241
Tssr80891 8 34108443 to 34108488 45 - TSS region transcription start site region 80891
Tssr80892 8 34108511 to 34108522 11 - TSS region transcription start site region 80892
Tssr80893 8 34108792 to 34108809 17 - TSS region transcription start site region 80893
Gm10131 8 34111002 to 34111737 735 - pseudogene predicted pseudogene 10131
Tssr80894 8 34111726 to 34111738 12 - TSS region transcription start site region 80894
Mboat4 8 34115030 to 34125182 10152 + protein coding gene membrane bound O-acyltransferase domain containing 4
Gm39158 8 34119011 to 34120208 1197 - antisense lncRNA gene predicted gene, 39158
Cpgi20242 8 34124054 to 34124452 398 CpG island CpG island 20242
Leprotl1 8 34135572 to 34146739 11167 - protein coding gene leptin receptor overlapping transcript-like 1
Tssr80895 8 34136664 to 34136667 3 - TSS region transcription start site region 80895
Tssr76860 8 34142856 to 34142870 14 + TSS region transcription start site region 76860
Tssr76861 8 34145244 to 34145249 5 + TSS region transcription start site region 76861
Tssr80896 8 34146147 to 34146161 14 - TSS region transcription start site region 80896
Cpgi20243 8 34146291 to 34147195 904 CpG island CpG island 20243
Tssr76862 8 34146325 to 34146337 12 + TSS region transcription start site region 76862
Tssr76863 8 34146360 to 34146367 7 + TSS region transcription start site region 76863
Tssr76864 8 34146375 to 34146384 9 + TSS region transcription start site region 76864
Tssr80897 8 34146581 to 34146587 6 - TSS region transcription start site region 80897
Tssr80898 8 34146717 to 34146718 1 - TSS region transcription start site region 80898
Tssr80899 8 34146732 to 34146752 20 - TSS region transcription start site region 80899
Tssr80900 8 34146753 to 34146768 15 - TSS region transcription start site region 80900
Tssr80901 8 34146774 to 34146810 36 - TSS region transcription start site region 80901
Tssr80902 8 34146974 to 34147013 39 - TSS region transcription start site region 80902
Tssr80903 8 34147018 to 34147066 48 - TSS region transcription start site region 80903
Tssr2544 8 34152346 to 34152350 4 + TSS region transcription start site region 2544
Gm45269 8 34152690 to 34152971 281 + pseudogene predicted gene 45269
Cpgi20244 8 34154357 to 34155191 834 CpG island CpG island 20244
Tssr80904 8 34154439 to 34154449 10 - TSS region transcription start site region 80904
Tssr76865 8 34154570 to 34154654 84 + TSS region transcription start site region 76865
Saraf 8 34154575 to 34170821 16246 + protein coding gene store-operated calcium entry-associated regulatory factor
Tssr76866 8 34154662 to 34154686 24 + TSS region transcription start site region 76866
Tssr76867 8 34154699 to 34154730 31 + TSS region transcription start site region 76867
Tssr80905 8 34155012 to 34155017 5 - TSS region transcription start site region 80905
Tssr80906 8 34155043 to 34155056 13 - TSS region transcription start site region 80906
Tssr76868 8 34155452 to 34155456 4 + TSS region transcription start site region 76868
Tssr80907 8 34156580 to 34156585 5 - TSS region transcription start site region 80907
Tssr76869 8 34156880 to 34156885 5 + TSS region transcription start site region 76869
Mir6395 8 34166622 to 34166712 90 - miRNA gene microRNA 6395
Gm33638 8 34171547 to 34173638 2091 - lncRNA gene predicted gene, 33638
Cpgi20245 8 34207980 to 34208182 202 CpG island CpG island 20245
Tssr76870 8 34216824 to 34216846 22 + TSS region transcription start site region 76870
Gm29243 8 34216859 to 34226145 9286 + lincRNA gene predicted gene 29243
Tssr80908 8 34260528 to 34260573 45 - TSS region transcription start site region 80908
D8Mit189 8 34276295 to 34276410 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 189
Gm23177 8 34295856 to 34295976 120 - miRNA gene predicted gene, 23177
Gm6100 8 34307285 to 34307687 402 - pseudogene predicted gene 6100
Gm8254 8 34321853 to 34322824 971 - pseudogene predicted gene 8254
Gm4889 8 34327910 to 34328353 443 + pseudogene predicted gene 4889
Gm45350 8 34344696 to 34362842 18146 - lincRNA gene predicted gene 45350
Cpgi20246 8 34372413 to 34372599 186 CpG island CpG island 20246
Gm33831 8 34380544 to 34385828 5284 - lincRNA gene predicted gene, 33831
Gm33910 8 34419204 to 34437622 18418 - lncRNA gene predicted gene, 33910
Gm45349 8 34419237 to 34472995 53758 - lincRNA gene predicted gene 45349
Gm39159 8 34440726 to 34455836 15110 + lncRNA gene predicted gene, 39159
Cpgi20247 8 34455534 to 34455702 168 CpG island CpG island 20247
Gm46038 8 34456918 to 34488105 31187 + lncRNA gene predicted gene, 46038
Gm39160 8 34462682 to 34472999 10317 - lncRNA gene predicted gene, 39160
Gm40489 8 34488965 to 34492650 3685 + lncRNA gene predicted gene, 40489