Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:33207492-34097528

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wrn 8 33234384 to 33385527 151143 - protein coding gene Werner syndrome RecQ like helicase
Tssr80846 8 33234931 to 33234951 20 - TSS region transcription start site region 80846
Tssr80847 8 33330574 to 33330604 30 - TSS region transcription start site region 80847
Cpgi20233 8 33385057 to 33386826 1769 CpG island CpG island 20233
Tssr80848 8 33385442 to 33385453 11 - TSS region transcription start site region 80848
Tssr80849 8 33385470 to 33385517 47 - TSS region transcription start site region 80849
Tssr76811 8 33385616 to 33385681 65 + TSS region transcription start site region 76811
Tssr76812 8 33385826 to 33385894 68 + TSS region transcription start site region 76812
Purg 8 33386325 to 33417467 31142 + protein coding gene purine-rich element binding protein G
Tssr2539 8 33411168 to 33411172 4 + TSS region transcription start site region 2539
Tssr76813 8 33414607 to 33414610 3 + TSS region transcription start site region 76813
5930422O12Rik 8 33428709 to 33429548 839 + unclassified gene RIKEN cDNA 5930422O12 gene
D8Mit337 8 33430309 to 33430409 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 337
Gm8201 8 33434510 to 33435307 797 - pseudogene predicted gene 8201
Tssr76814 8 33484190 to 33484203 13 + TSS region transcription start site region 76814
Hmgb1-rs17 8 33484196 to 33485167 971 + pseudogene high mobility group box 1, related sequence 17
Tssr76815 8 33516660 to 33516678 18 + TSS region transcription start site region 76815
Cpgi20234 8 33516670 to 33517722 1052 CpG island CpG island 20234
Tssr76816 8 33516730 to 33516744 14 + TSS region transcription start site region 76816
Tex15 8 33516738 to 33585582 68844 + protein coding gene testis expressed gene 15
Tssr2540 8 33517274 to 33517300 26 + TSS region transcription start site region 2540
Tssr76817 8 33517306 to 33517325 19 + TSS region transcription start site region 76817
Tssr76818 8 33536578 to 33536587 9 + TSS region transcription start site region 76818
Tssr76819 8 33536602 to 33536621 19 + TSS region transcription start site region 76819
Cpgi20235 8 33599227 to 33600445 1218 CpG island CpG island 20235
Tssr76820 8 33599574 to 33599591 17 + TSS region transcription start site region 76820
Tssr76821 8 33599593 to 33599606 13 + TSS region transcription start site region 76821
Tssr76822 8 33599608 to 33599655 47 + TSS region transcription start site region 76822
Ppp2cb 8 33599625 to 33619441 19816 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
Tssr76823 8 33599680 to 33599681 1 + TSS region transcription start site region 76823
Tssr76824 8 33599814 to 33599865 51 + TSS region transcription start site region 76824
Tssr76825 8 33599882 to 33599911 29 + TSS region transcription start site region 76825
Tssr76826 8 33600639 to 33600642 3 + TSS region transcription start site region 76826
Ubxn8 8 33619586 to 33641967 22381 - protein coding gene UBX domain protein 8
Cpgi20236 8 33641631 to 33642471 840 CpG island CpG island 20236
Tssr80850 8 33641940 to 33641981 41 - TSS region transcription start site region 80850
Tssr80851 8 33642365 to 33642403 38 - TSS region transcription start site region 80851
Gm33433 8 33645537 to 33652876 7339 + lncRNA gene predicted gene, 33433
Tssr76827 8 33652492 to 33652528 36 + TSS region transcription start site region 76827
Cpgi20237 8 33653131 to 33654326 1195 CpG island CpG island 20237
Gsr 8 33653238 to 33698162 44924 + protein coding gene glutathione reductase
Tssr76828 8 33653489 to 33653548 59 + TSS region transcription start site region 76828
Tssr76829 8 33653552 to 33653623 71 + TSS region transcription start site region 76829
Tssr76830 8 33653654 to 33653659 5 + TSS region transcription start site region 76830
Tssr76831 8 33654129 to 33654160 31 + TSS region transcription start site region 76831
Tssr76832 8 33657967 to 33657974 7 + TSS region transcription start site region 76832
Tssr76833 8 33657985 to 33658000 15 + TSS region transcription start site region 76833
Tssr2541 8 33658005 to 33658013 8 + TSS region transcription start site region 2541
Tssr80852 8 33660605 to 33660618 13 - TSS region transcription start site region 80852
Tssr80853 8 33660645 to 33660654 9 - TSS region transcription start site region 80853
Tssr76834 8 33660800 to 33660808 8 + TSS region transcription start site region 76834
Tssr76835 8 33660873 to 33660898 25 + TSS region transcription start site region 76835
Tssr80854 8 33664468 to 33664469 1 - TSS region transcription start site region 80854
Tssr80855 8 33666371 to 33666377 6 - TSS region transcription start site region 80855
Tssr76836 8 33667809 to 33667826 17 + TSS region transcription start site region 76836
Tssr76837 8 33668447 to 33668461 14 + TSS region transcription start site region 76837
Tssr76838 8 33673903 to 33673943 40 + TSS region transcription start site region 76838
Tssr76839 8 33673945 to 33673960 15 + TSS region transcription start site region 76839
Tssr76840 8 33674366 to 33674379 13 + TSS region transcription start site region 76840
Tssr76841 8 33680775 to 33680805 30 + TSS region transcription start site region 76841
Gm24727 8 33691801 to 33691944 143 + snoRNA gene predicted gene, 24727
Gm17803 8 33692018 to 33693056 1038 + pseudogene predicted gene, 17803
Tssr76842 8 33694602 to 33694606 4 + TSS region transcription start site region 76842
Tssr76843 8 33697139 to 33697154 15 + TSS region transcription start site region 76843
Tssr76844 8 33697162 to 33697177 15 + TSS region transcription start site region 76844
Tssr76845 8 33697291 to 33697330 39 + TSS region transcription start site region 76845
Tssr76846 8 33697459 to 33697488 29 + TSS region transcription start site region 76846
Tssr76847 8 33697673 to 33697705 32 + TSS region transcription start site region 76847
Gm40485 8 33701775 to 33709143 7368 - lncRNA gene predicted gene, 40485
1700104B16Rik 8 33730534 to 33731819 1285 - lincRNA gene RIKEN cDNA 1700104B16 gene
Cpgi20238 8 33731536 to 33732741 1205 CpG island CpG island 20238
Tssr80856 8 33731764 to 33731785 21 - TSS region transcription start site region 80856
Tssr80857 8 33731793 to 33731823 30 - TSS region transcription start site region 80857
Tssr76848 8 33731867 to 33731946 79 + TSS region transcription start site region 76848
Gtf2e2 8 33731914 to 33777173 45259 + protein coding gene general transcription factor II E, polypeptide 2 (beta subunit)
Tssr76849 8 33732049 to 33732137 88 + TSS region transcription start site region 76849
Tssr76850 8 33732187 to 33732188 1 + TSS region transcription start site region 76850
Tssr76851 8 33732196 to 33732236 40 + TSS region transcription start site region 76851
Tssr76852 8 33732237 to 33732247 10 + TSS region transcription start site region 76852
Smim18 8 33742112 to 33747770 5658 - protein coding gene small integral membrane protein 18
Tssr80858 8 33747724 to 33747781 57 - TSS region transcription start site region 80858
Tssr76853 8 33764858 to 33764886 28 + TSS region transcription start site region 76853
Rbpms 8 33782643 to 33929863 147220 - protein coding gene RNA binding protein gene with multiple splicing
Tssr80859 8 33801685 to 33801688 3 - TSS region transcription start site region 80859
Tssr80860 8 33806742 to 33806783 41 - TSS region transcription start site region 80860
Tssr80861 8 33806860 to 33806885 25 - TSS region transcription start site region 80861
Gm26632 8 33813203 to 33833094 19891 + antisense lncRNA gene predicted gene, 26632
Tssr80862 8 33826172 to 33826175 3 - TSS region transcription start site region 80862
Tssr80863 8 33832350 to 33832355 5 - TSS region transcription start site region 80863
Cpgi20239 8 33833337 to 33833745 408 CpG island CpG island 20239
Tssr80864 8 33834422 to 33834459 37 - TSS region transcription start site region 80864
Tssr80865 8 33843545 to 33843556 11 - TSS region transcription start site region 80865
Tssr80866 8 33843562 to 33843573 11 - TSS region transcription start site region 80866
Tssr2542 8 33844774 to 33844811 37 - TSS region transcription start site region 2542
Tssr80867 8 33844897 to 33844911 14 - TSS region transcription start site region 80867
Tssr80868 8 33844915 to 33844922 7 - TSS region transcription start site region 80868
D8Mit258 8 33848892 to 33848977 85 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 258
Tssr80869 8 33853693 to 33853702 9 - TSS region transcription start site region 80869
Tssr80870 8 33862536 to 33862540 4 - TSS region transcription start site region 80870
Tssr80871 8 33863029 to 33863051 22 - TSS region transcription start site region 80871
Gm26978 8 33884774 to 33885747 973 - sense intronic lncRNA gene predicted gene, 26978
Tssr80872 8 33886750 to 33886752 2 - TSS region transcription start site region 80872
Tssr80873 8 33902581 to 33902586 5 - TSS region transcription start site region 80873
Tssr76854 8 33913365 to 33913409 44 + TSS region transcription start site region 76854
Tssr80874 8 33914200 to 33914239 39 - TSS region transcription start site region 80874
Tssr76855 8 33914368 to 33914378 10 + TSS region transcription start site region 76855
Tssr80875 8 33914587 to 33914590 3 - TSS region transcription start site region 80875
Tssr80876 8 33916139 to 33916148 9 - TSS region transcription start site region 80876
Tssr80877 8 33916411 to 33916415 4 - TSS region transcription start site region 80877
Tssr80878 8 33916846 to 33916851 5 - TSS region transcription start site region 80878
Tssr80879 8 33917302 to 33917322 20 - TSS region transcription start site region 80879
Tssr80880 8 33927471 to 33927474 3 - TSS region transcription start site region 80880
9530006C21Rik 8 33928166 to 33928768 602 unclassified gene RIKEN cDNA 9530006C21 gene
Cpgi20240 8 33929103 to 33930700 1597 CpG island CpG island 20240
Tssr80881 8 33929798 to 33929816 18 - TSS region transcription start site region 80881
Tssr80882 8 33929933 to 33929977 44 - TSS region transcription start site region 80882
Tssr80883 8 33929978 to 33930009 31 - TSS region transcription start site region 80883
Tssr76856 8 33964210 to 33964258 48 + TSS region transcription start site region 76856
Gm33588 8 33964213 to 33974504 10291 + lncRNA gene predicted gene, 33588
Gm45817 8 33985444 to 33987200 1756 - unclassified gene predicted gene 45817
Gm39157 8 33987509 to 33989596 2087 + lincRNA gene predicted gene, 39157
Tssr76857 8 33990258 to 33990278 20 + TSS region transcription start site region 76857
Gm40487 8 34045172 to 34064659 19487 + lncRNA gene predicted gene, 40487
Tssr80884 8 34048948 to 34048955 7 - TSS region transcription start site region 80884
Gm9951 8 34049262 to 34057046 7784 + lincRNA gene predicted gene 9951
Gm40486 8 34052489 to 34055877 3388 - lncRNA gene predicted gene, 40486
Tssr76858 8 34054634 to 34054647 13 + TSS region transcription start site region 76858
Tssr2543 8 34055868 to 34055877 9 - TSS region transcription start site region 2543
Tssr80885 8 34055898 to 34055909 11 - TSS region transcription start site region 80885
Tssr76859 8 34080773 to 34080802 29 + TSS region transcription start site region 76859
Dctn6 8 34090420 to 34108712 18292 - protein coding gene dynactin 6
Tssr80886 8 34093161 to 34093172 11 - TSS region transcription start site region 80886
Tssr80887 8 34094349 to 34094378 29 - TSS region transcription start site region 80887
Gm26768 8 34094548 to 34096149 1601 + lincRNA gene predicted gene, 26768
Tssr80888 8 34097292 to 34097372 80 - TSS region transcription start site region 80888