Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:31117208-32359760

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf122 8 31111820 to 31131482 19662 + protein coding gene ring finger protein 122
Tssr76803 8 31129402 to 31129412 10 + TSS region transcription start site region 76803
Snord13 8 31149861 to 31149958 97 - snoRNA gene small nucleolar RNA, C/D box 13
Cpgi20225 8 31149943 to 31150372 429 CpG island CpG island 20225
Tssr80813 8 31149966 to 31149970 4 - TSS region transcription start site region 80813
Tssr76804 8 31150307 to 31150346 39 + TSS region transcription start site region 76804
Tti2 8 31150316 to 31164703 14387 + protein coding gene TELO2 interacting protein 2
Tssr76805 8 31150431 to 31150434 3 + TSS region transcription start site region 76805
Cpgi20226 8 31150600 to 31151282 682 CpG island CpG island 20226
Mak16 8 31159468 to 31168724 9256 - protein coding gene MAK16 homolog
Tssr80814 8 31163096 to 31163106 10 - TSS region transcription start site region 80814
Tssr80815 8 31167816 to 31167824 8 - TSS region transcription start site region 80815
Cpgi20227 8 31168260 to 31169202 942 CpG island CpG island 20227
Tssr80816 8 31168699 to 31168746 47 - TSS region transcription start site region 80816
Tssr80817 8 31168747 to 31168769 22 - TSS region transcription start site region 80817
Tssr76806 8 31168811 to 31168884 73 + TSS region transcription start site region 76806
Cpgi20228 8 31187140 to 31187818 678 CpG island CpG island 20228
Tssr76807 8 31187317 to 31187357 40 + TSS region transcription start site region 76807
Fut10 8 31187331 to 31261738 74407 + protein coding gene fucosyltransferase 10
Tssr76808 8 31187367 to 31187392 25 + TSS region transcription start site region 76808
Tssr76809 8 31187399 to 31187410 11 + TSS region transcription start site region 76809
Gm8051 8 31214886 to 31215351 465 - pseudogene predicted gene 8051
Gm8168 8 31279867 to 31280814 947 - pseudogene predicted gene 8168
Vent1 8 31341658 to 34276410 2934752 QTL ventricular size 1
D8Mit94 8 31341658 to 31341811 153 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 94
7420700N18Rik 8 31378813 to 31382439 3626 + lincRNA gene RIKEN cDNA 7420700N18 gene
Gm36113 8 31379254 to 31380551 1297 - pseudogene predicted gene, 36113
Gm19096 8 31380569 to 31381316 747 - pseudogene predicted gene, 19096
Gm45303 8 31491976 to 31500090 8114 + lincRNA gene predicted gene 45303
Gm23539 8 31544463 to 31544686 223 - unclassified non-coding RNA gene predicted gene, 23539
Gm45304 8 31598979 to 31663828 64849 - lincRNA gene predicted gene 45304
Gm24184 8 31661331 to 31661431 100 - unclassified non-coding RNA gene predicted gene, 24184
Gm5117 8 31737208 to 31739760 2552 - pseudogene predicted gene 5117
Nrg1 8 31814551 to 32884029 1069478 - protein coding gene neuregulin 1
Tssr80818 8 31918352 to 31918368 16 - TSS region transcription start site region 80818
Cpgi20229 8 31918627 to 31918907 280 CpG island CpG island 20229
Tssr80819 8 31918775 to 31918801 26 - TSS region transcription start site region 80819
Tssr80820 8 31918817 to 31918829 12 - TSS region transcription start site region 80820
Tssr80821 8 31918836 to 31918877 41 - TSS region transcription start site region 80821
Gm33223 8 31919554 to 31926205 6651 + lncRNA gene predicted gene, 33223
Tssr80822 8 31950046 to 31950074 28 - TSS region transcription start site region 80822
Tssr80823 8 31950082 to 31950091 9 - TSS region transcription start site region 80823
Tssr2537 8 31975103 to 31975109 6 + TSS region transcription start site region 2537
Tssr80824 8 32004840 to 32004845 5 - TSS region transcription start site region 80824
Cpgi20230 8 32008372 to 32010234 1862 CpG island CpG island 20230
Gm26578 8 32008504 to 32015759 7255 + lincRNA gene predicted gene, 26578
Tssr80825 8 32009470 to 32009480 10 - TSS region transcription start site region 80825
Tssr80826 8 32009488 to 32009519 31 - TSS region transcription start site region 80826
Tssr80827 8 32009528 to 32009541 13 - TSS region transcription start site region 80827
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
Alcw6 8 32016544 to 32016701 157 QTL alcohol withdrawal 6
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
D8Mit4 8 32016544 to 32016701 157 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 4
Daq19 8 32016544 to 32016701 157 QTL directional asymmetry QTL 19
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
Hk 8 32016544 to 49436343 17419799 heritable phenotypic marker hook
Gripgtt2 8 32020000 to 34520000 2500000 QTL glucose response to intraperitoneal glucose tolerance test 2, females only
2010007E15Rik 8 32077166 to 32083873 6707 unclassified gene RIKEN cDNA 2010007E15 gene
Gm8179 8 32151895 to 32181847 29952 + lncRNA gene predicted gene 8179
Tssr76810 8 32160217 to 32160233 16 + TSS region transcription start site region 76810
Gm22140 8 32186129 to 32186248 119 + snRNA gene predicted gene, 22140
Tssr80828 8 32264246 to 32264251 5 - TSS region transcription start site region 80828
Cpgi20231 8 32293142 to 32293406 264 CpG island CpG island 20231
D8Mit291 8 32337375 to 32337469 94 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 291
Bmd39 8 117238700 to 32016544 -85222156 QTL bone mineral density 39