Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:30173096-32153106

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6853 8 30181865 to 30183525 1660 - pseudogene predicted gene 6853
Tssr80811 8 30183963 to 30183967 4 - TSS region transcription start site region 80811
Gm45490 8 30439747 to 30442224 2477 - lincRNA gene predicted gene 45490
Gm45489 8 30482983 to 30513811 30828 - lincRNA gene predicted gene 45489
4933433F19Rik 8 30568395 to 30575573 7178 + lincRNA gene RIKEN cDNA 4933433F19 gene
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
D8Mit336 8 30909094 to 30909192 98 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 336
Gm32735 8 30915147 to 30916548 1401 + lncRNA gene predicted gene, 32735
Tssr2535 8 30920061 to 30920062 1 + TSS region transcription start site region 2535
D430032J08Rik 8 30942694 to 30946605 3911 unclassified gene RIKEN cDNA D430032J08 gene
Gm32791 8 30942701 to 30959699 16998 - lncRNA gene predicted gene, 32791
Gm32841 8 31001395 to 31009494 8099 - lncRNA gene predicted gene, 32841
Gm45252 8 31003908 to 31004304 396 + pseudogene predicted gene 45252
D8Mit330 8 31009161 to 31009301 140 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-330
Tssr80812 8 31067832 to 31067837 5 - TSS region transcription start site region 80812
Cpgi20223 8 31089358 to 31090226 868 CpG island CpG island 20223
Tssr76793 8 31089575 to 31089593 18 + TSS region transcription start site region 76793
Tssr76794 8 31089606 to 31089760 154 + TSS region transcription start site region 76794
Dusp26 8 31089662 to 31097047 7385 + protein coding gene dual specificity phosphatase 26 (putative)
Tssr76795 8 31090147 to 31090160 13 + TSS region transcription start site region 76795
Tssr76796 8 31091593 to 31091635 42 + TSS region transcription start site region 76796
Tssr76797 8 31106611 to 31106618 7 + TSS region transcription start site region 76797
Gm40484 8 31106629 to 31109225 2596 + lncRNA gene predicted gene, 40484
Cpgi20224 8 31111382 to 31112444 1062 CpG island CpG island 20224
Tssr2536 8 31111593 to 31111614 21 + TSS region transcription start site region 2536
Tssr76798 8 31111789 to 31111799 10 + TSS region transcription start site region 76798
Tssr76799 8 31111816 to 31111891 75 + TSS region transcription start site region 76799
Rnf122 8 31111820 to 31131482 19662 + protein coding gene ring finger protein 122
Tssr76800 8 31111896 to 31111907 11 + TSS region transcription start site region 76800
Tssr76801 8 31115038 to 31115063 25 + TSS region transcription start site region 76801
Tssr76802 8 31115092 to 31115103 11 + TSS region transcription start site region 76802
Tssr76803 8 31129402 to 31129412 10 + TSS region transcription start site region 76803
Snord13 8 31149861 to 31149958 97 - snoRNA gene small nucleolar RNA, C/D box 13
Cpgi20225 8 31149943 to 31150372 429 CpG island CpG island 20225
Tssr80813 8 31149966 to 31149970 4 - TSS region transcription start site region 80813
Tssr76804 8 31150307 to 31150346 39 + TSS region transcription start site region 76804
Tti2 8 31150316 to 31164703 14387 + protein coding gene TELO2 interacting protein 2
Tssr76805 8 31150431 to 31150434 3 + TSS region transcription start site region 76805
Cpgi20226 8 31150600 to 31151282 682 CpG island CpG island 20226
Mak16 8 31159468 to 31168724 9256 - protein coding gene MAK16 homolog
Tssr80814 8 31163096 to 31163106 10 - TSS region transcription start site region 80814
Tssr80815 8 31167816 to 31167824 8 - TSS region transcription start site region 80815
Cpgi20227 8 31168260 to 31169202 942 CpG island CpG island 20227
Tssr80816 8 31168699 to 31168746 47 - TSS region transcription start site region 80816
Tssr80817 8 31168747 to 31168769 22 - TSS region transcription start site region 80817
Tssr76806 8 31168811 to 31168884 73 + TSS region transcription start site region 76806
Cpgi20228 8 31187140 to 31187818 678 CpG island CpG island 20228
Tssr76807 8 31187317 to 31187357 40 + TSS region transcription start site region 76807
Fut10 8 31187331 to 31261738 74407 + protein coding gene fucosyltransferase 10
Tssr76808 8 31187367 to 31187392 25 + TSS region transcription start site region 76808
Tssr76809 8 31187399 to 31187410 11 + TSS region transcription start site region 76809
Gm8051 8 31214886 to 31215351 465 - pseudogene predicted gene 8051
Gm8168 8 31279867 to 31280814 947 - pseudogene predicted gene 8168
D8Mit94 8 31341658 to 31341811 153 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 94
Vent1 8 31341658 to 34276410 2934752 QTL ventricular size 1
7420700N18Rik 8 31378813 to 31382439 3626 + lincRNA gene RIKEN cDNA 7420700N18 gene
Gm36113 8 31379254 to 31380551 1297 - pseudogene predicted gene, 36113
Gm19096 8 31380569 to 31381316 747 - pseudogene predicted gene, 19096
Gm45303 8 31491976 to 31500090 8114 + lincRNA gene predicted gene 45303
Gm23539 8 31544463 to 31544686 223 - unclassified non-coding RNA gene predicted gene, 23539
Gm45304 8 31598979 to 31663828 64849 - lincRNA gene predicted gene 45304
Gm24184 8 31661331 to 31661431 100 - unclassified non-coding RNA gene predicted gene, 24184
Gm5117 8 31737208 to 31739760 2552 - pseudogene predicted gene 5117
Nrg1 8 31814551 to 32884029 1069478 - protein coding gene neuregulin 1
Tssr80818 8 31918352 to 31918368 16 - TSS region transcription start site region 80818
Cpgi20229 8 31918627 to 31918907 280 CpG island CpG island 20229
Tssr80819 8 31918775 to 31918801 26 - TSS region transcription start site region 80819
Tssr80820 8 31918817 to 31918829 12 - TSS region transcription start site region 80820
Tssr80821 8 31918836 to 31918877 41 - TSS region transcription start site region 80821
Gm33223 8 31919554 to 31926205 6651 + lncRNA gene predicted gene, 33223
Tssr80822 8 31950046 to 31950074 28 - TSS region transcription start site region 80822
Tssr80823 8 31950082 to 31950091 9 - TSS region transcription start site region 80823
Tssr2537 8 31975103 to 31975109 6 + TSS region transcription start site region 2537
Tssr80824 8 32004840 to 32004845 5 - TSS region transcription start site region 80824
Cpgi20230 8 32008372 to 32010234 1862 CpG island CpG island 20230
Gm26578 8 32008504 to 32015759 7255 + lincRNA gene predicted gene, 26578
Tssr80825 8 32009470 to 32009480 10 - TSS region transcription start site region 80825
Tssr80826 8 32009488 to 32009519 31 - TSS region transcription start site region 80826
Tssr80827 8 32009528 to 32009541 13 - TSS region transcription start site region 80827
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
Alcw6 8 32016544 to 32016701 157 QTL alcohol withdrawal 6
Hk 8 32016544 to 49436343 17419799 heritable phenotypic marker hook
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
Daq19 8 32016544 to 32016701 157 QTL directional asymmetry QTL 19
D8Mit4 8 32016544 to 32016701 157 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 4
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
Gripgtt2 8 32020000 to 34520000 2500000 QTL glucose response to intraperitoneal glucose tolerance test 2, females only
2010007E15Rik 8 32077166 to 32083873 6707 unclassified gene RIKEN cDNA 2010007E15 gene
Gm8179 8 32151895 to 32181847 29952 + lncRNA gene predicted gene 8179
Bmd39 8 117238700 to 32016544 -85222156 QTL bone mineral density 39