Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:29214510-37655307

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604 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc42 8 13397210 to 34854071 21456861 QTL susceptibility to lung cancer 42
Unc5d 8 28646717 to 29219636 572919 - protein coding gene unc-5 netrin receptor D
Cpgi20222 8 29218648 to 29220033 1385 CpG island CpG island 20222
Tssr80809 8 29219577 to 29219623 46 - TSS region transcription start site region 80809
Tssr80810 8 29219627 to 29219640 13 - TSS region transcription start site region 80810
Gm32567 8 29228598 to 29235104 6506 - lincRNA gene predicted gene, 32567
Nudc-ps1 8 29286431 to 29286981 550 - pseudogene nuclear distribution gene C homolog (Aspergillus), pseudogene 1
Gm18676 8 29417354 to 29417856 502 - pseudogene predicted gene, 18676
Gm32621 8 29530349 to 29532136 1787 + lncRNA gene predicted gene, 32621
Gm29816 8 29533059 to 29533405 346 - pseudogene predicted gene, 29816
D8Mit96 8 29604682 to 29604792 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 96
Gm32678 8 29610770 to 29614259 3489 - lncRNA gene predicted gene, 32678
Tssr76792 8 29719549 to 29719554 5 + TSS region transcription start site region 76792
D8Mit281 8 30053818 to 30053940 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 281
Gm45492 8 30081673 to 30081960 287 - pseudogene predicted gene 45492
Gm39154 8 30112310 to 30121214 8904 - lincRNA gene predicted gene, 39154
Gm6853 8 30181865 to 30183525 1660 - pseudogene predicted gene 6853
Tssr80811 8 30183963 to 30183967 4 - TSS region transcription start site region 80811
Gm45490 8 30439747 to 30442224 2477 - lincRNA gene predicted gene 45490
Gm45489 8 30482983 to 30513811 30828 - lincRNA gene predicted gene 45489
4933433F19Rik 8 30568395 to 30575573 7178 + lincRNA gene RIKEN cDNA 4933433F19 gene
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
D8Mit336 8 30909094 to 30909192 98 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 336
Gm32735 8 30915147 to 30916548 1401 + lncRNA gene predicted gene, 32735
Tssr2535 8 30920061 to 30920062 1 + TSS region transcription start site region 2535
D430032J08Rik 8 30942694 to 30946605 3911 unclassified gene RIKEN cDNA D430032J08 gene
Gm32791 8 30942701 to 30959699 16998 - lncRNA gene predicted gene, 32791
Gm32841 8 31001395 to 31009494 8099 - lncRNA gene predicted gene, 32841
Gm45252 8 31003908 to 31004304 396 + pseudogene predicted gene 45252
D8Mit330 8 31009161 to 31009301 140 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-330
Tssr80812 8 31067832 to 31067837 5 - TSS region transcription start site region 80812
Cpgi20223 8 31089358 to 31090226 868 CpG island CpG island 20223
Tssr76793 8 31089575 to 31089593 18 + TSS region transcription start site region 76793
Tssr76794 8 31089606 to 31089760 154 + TSS region transcription start site region 76794
Dusp26 8 31089662 to 31097047 7385 + protein coding gene dual specificity phosphatase 26 (putative)
Tssr76795 8 31090147 to 31090160 13 + TSS region transcription start site region 76795
Tssr76796 8 31091593 to 31091635 42 + TSS region transcription start site region 76796
Tssr76797 8 31106611 to 31106618 7 + TSS region transcription start site region 76797
Gm40484 8 31106629 to 31109225 2596 + lncRNA gene predicted gene, 40484
Cpgi20224 8 31111382 to 31112444 1062 CpG island CpG island 20224
Tssr2536 8 31111593 to 31111614 21 + TSS region transcription start site region 2536
Tssr76798 8 31111789 to 31111799 10 + TSS region transcription start site region 76798
Tssr76799 8 31111816 to 31111891 75 + TSS region transcription start site region 76799
Rnf122 8 31111820 to 31131482 19662 + protein coding gene ring finger protein 122
Tssr76800 8 31111896 to 31111907 11 + TSS region transcription start site region 76800
Tssr76801 8 31115038 to 31115063 25 + TSS region transcription start site region 76801
Tssr76802 8 31115092 to 31115103 11 + TSS region transcription start site region 76802
Tssr76803 8 31129402 to 31129412 10 + TSS region transcription start site region 76803
Snord13 8 31149861 to 31149958 97 - snoRNA gene small nucleolar RNA, C/D box 13
Cpgi20225 8 31149943 to 31150372 429 CpG island CpG island 20225
Tssr80813 8 31149966 to 31149970 4 - TSS region transcription start site region 80813
Tssr76804 8 31150307 to 31150346 39 + TSS region transcription start site region 76804
Tti2 8 31150316 to 31164703 14387 + protein coding gene TELO2 interacting protein 2
Tssr76805 8 31150431 to 31150434 3 + TSS region transcription start site region 76805
Cpgi20226 8 31150600 to 31151282 682 CpG island CpG island 20226
Mak16 8 31159468 to 31168724 9256 - protein coding gene MAK16 homolog
Tssr80814 8 31163096 to 31163106 10 - TSS region transcription start site region 80814
Tssr80815 8 31167816 to 31167824 8 - TSS region transcription start site region 80815
Cpgi20227 8 31168260 to 31169202 942 CpG island CpG island 20227
Tssr80816 8 31168699 to 31168746 47 - TSS region transcription start site region 80816
Tssr80817 8 31168747 to 31168769 22 - TSS region transcription start site region 80817
Tssr76806 8 31168811 to 31168884 73 + TSS region transcription start site region 76806
Cpgi20228 8 31187140 to 31187818 678 CpG island CpG island 20228
Tssr76807 8 31187317 to 31187357 40 + TSS region transcription start site region 76807
Fut10 8 31187331 to 31261738 74407 + protein coding gene fucosyltransferase 10
Tssr76808 8 31187367 to 31187392 25 + TSS region transcription start site region 76808
Tssr76809 8 31187399 to 31187410 11 + TSS region transcription start site region 76809
Gm8051 8 31214886 to 31215351 465 - pseudogene predicted gene 8051
Gm8168 8 31279867 to 31280814 947 - pseudogene predicted gene 8168
Vent1 8 31341658 to 34276410 2934752 QTL ventricular size 1
D8Mit94 8 31341658 to 31341811 153 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 94
7420700N18Rik 8 31378813 to 31382439 3626 + lincRNA gene RIKEN cDNA 7420700N18 gene
Gm36113 8 31379254 to 31380551 1297 - pseudogene predicted gene, 36113
Gm19096 8 31380569 to 31381316 747 - pseudogene predicted gene, 19096
Gm45303 8 31491976 to 31500090 8114 + lincRNA gene predicted gene 45303
Gm23539 8 31544463 to 31544686 223 - unclassified non-coding RNA gene predicted gene, 23539
Gm45304 8 31598979 to 31663828 64849 - lincRNA gene predicted gene 45304
Gm24184 8 31661331 to 31661431 100 - unclassified non-coding RNA gene predicted gene, 24184
Gm5117 8 31737208 to 31739760 2552 - pseudogene predicted gene 5117
Nrg1 8 31814551 to 32884029 1069478 - protein coding gene neuregulin 1
Tssr80818 8 31918352 to 31918368 16 - TSS region transcription start site region 80818
Cpgi20229 8 31918627 to 31918907 280 CpG island CpG island 20229
Tssr80819 8 31918775 to 31918801 26 - TSS region transcription start site region 80819
Tssr80820 8 31918817 to 31918829 12 - TSS region transcription start site region 80820
Tssr80821 8 31918836 to 31918877 41 - TSS region transcription start site region 80821
Gm33223 8 31919554 to 31926205 6651 + lncRNA gene predicted gene, 33223
Tssr80822 8 31950046 to 31950074 28 - TSS region transcription start site region 80822
Tssr80823 8 31950082 to 31950091 9 - TSS region transcription start site region 80823
Tssr2537 8 31975103 to 31975109 6 + TSS region transcription start site region 2537
Tssr80824 8 32004840 to 32004845 5 - TSS region transcription start site region 80824
Cpgi20230 8 32008372 to 32010234 1862 CpG island CpG island 20230
Gm26578 8 32008504 to 32015759 7255 + lincRNA gene predicted gene, 26578
Tssr80825 8 32009470 to 32009480 10 - TSS region transcription start site region 80825
Tssr80826 8 32009488 to 32009519 31 - TSS region transcription start site region 80826
Tssr80827 8 32009528 to 32009541 13 - TSS region transcription start site region 80827
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
Hk 8 32016544 to 49436343 17419799 heritable phenotypic marker hook
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
D8Mit4 8 32016544 to 32016701 157 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 4
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
Alcw6 8 32016544 to 32016701 157 QTL alcohol withdrawal 6
Daq19 8 32016544 to 32016701 157 QTL directional asymmetry QTL 19
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
Gripgtt2 8 32020000 to 34520000 2500000 QTL glucose response to intraperitoneal glucose tolerance test 2, females only
2010007E15Rik 8 32077166 to 32083873 6707 unclassified gene RIKEN cDNA 2010007E15 gene
Gm8179 8 32151895 to 32181847 29952 + lncRNA gene predicted gene 8179
Tssr76810 8 32160217 to 32160233 16 + TSS region transcription start site region 76810
Gm22140 8 32186129 to 32186248 119 + snRNA gene predicted gene, 22140
Tssr80828 8 32264246 to 32264251 5 - TSS region transcription start site region 80828
Cpgi20231 8 32293142 to 32293406 264 CpG island CpG island 20231
D8Mit291 8 32337375 to 32337469 94 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 291
Tssr80829 8 32421139 to 32421150 11 - TSS region transcription start site region 80829
Tssr80830 8 32454850 to 32454874 24 - TSS region transcription start site region 80830
Gm46076 8 32471078 to 32477346 6268 - pseudogene predicted gene, 46076
Tssr80831 8 32477351 to 32477353 2 - TSS region transcription start site region 80831
Tssr80832 8 32610677 to 32610713 36 - TSS region transcription start site region 80832
Tssr80833 8 32649644 to 32649647 3 - TSS region transcription start site region 80833
Tssr80834 8 32668429 to 32668435 6 - TSS region transcription start site region 80834
Tssr80835 8 32673697 to 32673707 10 - TSS region transcription start site region 80835
Tssr2538 8 32712501 to 32712505 4 + TSS region transcription start site region 2538
Gm39155 8 32751734 to 32853374 101640 + lncRNA gene predicted gene, 39155
Tssr80836 8 32763037 to 32763047 10 - TSS region transcription start site region 80836
Hbnr12 8 32786988 to 50837502 18050514 QTL Heligmosomoides bakeri nematode resistance 12
D8Mit64 8 32786988 to 32787154 166 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 64
Tssr80837 8 32819771 to 32819782 11 - TSS region transcription start site region 80837
Tssr80838 8 32819918 to 32819931 13 - TSS region transcription start site region 80838
Tssr80839 8 32820156 to 32820184 28 - TSS region transcription start site region 80839
Tssr80840 8 32820241 to 32820253 12 - TSS region transcription start site region 80840
Tssr80841 8 32820268 to 32820296 28 - TSS region transcription start site region 80841
D8Mit63 8 32828411 to 32828615 204 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 63
Tssr80842 8 32874822 to 32874826 4 - TSS region transcription start site region 80842
Cpgi20232 8 32883119 to 32885084 1965 CpG island CpG island 20232
Tssr80843 8 32884288 to 32884300 12 - TSS region transcription start site region 80843
Tssr80844 8 32884633 to 32884661 28 - TSS region transcription start site region 80844
Tssr80845 8 32884903 to 32884915 12 - TSS region transcription start site region 80845
Gm3985 8 32888505 to 32950026 61521 - lincRNA gene predicted gene 3985
Gm33082 8 32890742 to 32892657 1915 + lncRNA gene predicted gene, 33082
Gm45587 8 32972831 to 33056091 83260 - lincRNA gene predicted gene 45587
Gm39156 8 33071052 to 33095369 24317 - lncRNA gene predicted gene, 39156
D8Mit224 8 33079345 to 33079669 324 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 224
Pgia4 8 33079345 to 33079669 324 QTL proteoglycan induced arthritis 4
Gm33281 8 33116803 to 33149512 32709 - lncRNA gene predicted gene, 33281
Gm6877 8 33191196 to 33192296 1100 - pseudogene predicted pseudogene 6877
Wrn 8 33234384 to 33385527 151143 - protein coding gene Werner syndrome RecQ like helicase
Tssr80846 8 33234931 to 33234951 20 - TSS region transcription start site region 80846
Tssr80847 8 33330574 to 33330604 30 - TSS region transcription start site region 80847
Cpgi20233 8 33385057 to 33386826 1769 CpG island CpG island 20233
Tssr80848 8 33385442 to 33385453 11 - TSS region transcription start site region 80848
Tssr80849 8 33385470 to 33385517 47 - TSS region transcription start site region 80849
Tssr76811 8 33385616 to 33385681 65 + TSS region transcription start site region 76811
Tssr76812 8 33385826 to 33385894 68 + TSS region transcription start site region 76812
Purg 8 33386325 to 33417467 31142 + protein coding gene purine-rich element binding protein G
Tssr2539 8 33411168 to 33411172 4 + TSS region transcription start site region 2539
Tssr76813 8 33414607 to 33414610 3 + TSS region transcription start site region 76813
5930422O12Rik 8 33428709 to 33429548 839 + unclassified gene RIKEN cDNA 5930422O12 gene
D8Mit337 8 33430309 to 33430409 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 337
Gm8201 8 33434510 to 33435307 797 - pseudogene predicted gene 8201
Tssr76814 8 33484190 to 33484203 13 + TSS region transcription start site region 76814
Hmgb1-rs17 8 33484196 to 33485167 971 + pseudogene high mobility group box 1, related sequence 17
Tssr76815 8 33516660 to 33516678 18 + TSS region transcription start site region 76815
Cpgi20234 8 33516670 to 33517722 1052 CpG island CpG island 20234
Tssr76816 8 33516730 to 33516744 14 + TSS region transcription start site region 76816
Tex15 8 33516738 to 33585582 68844 + protein coding gene testis expressed gene 15
Tssr2540 8 33517274 to 33517300 26 + TSS region transcription start site region 2540
Tssr76817 8 33517306 to 33517325 19 + TSS region transcription start site region 76817
Tssr76818 8 33536578 to 33536587 9 + TSS region transcription start site region 76818
Tssr76819 8 33536602 to 33536621 19 + TSS region transcription start site region 76819
Cpgi20235 8 33599227 to 33600445 1218 CpG island CpG island 20235
Tssr76820 8 33599574 to 33599591 17 + TSS region transcription start site region 76820
Tssr76821 8 33599593 to 33599606 13 + TSS region transcription start site region 76821
Tssr76822 8 33599608 to 33599655 47 + TSS region transcription start site region 76822
Ppp2cb 8 33599625 to 33619441 19816 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
Tssr76823 8 33599680 to 33599681 1 + TSS region transcription start site region 76823
Tssr76824 8 33599814 to 33599865 51 + TSS region transcription start site region 76824
Tssr76825 8 33599882 to 33599911 29 + TSS region transcription start site region 76825
Tssr76826 8 33600639 to 33600642 3 + TSS region transcription start site region 76826
Ubxn8 8 33619586 to 33641967 22381 - protein coding gene UBX domain protein 8
Cpgi20236 8 33641631 to 33642471 840 CpG island CpG island 20236
Tssr80850 8 33641940 to 33641981 41 - TSS region transcription start site region 80850
Tssr80851 8 33642365 to 33642403 38 - TSS region transcription start site region 80851
Gm33433 8 33645537 to 33652876 7339 + lncRNA gene predicted gene, 33433
Tssr76827 8 33652492 to 33652528 36 + TSS region transcription start site region 76827
Cpgi20237 8 33653131 to 33654326 1195 CpG island CpG island 20237
Gsr 8 33653238 to 33698162 44924 + protein coding gene glutathione reductase
Tssr76828 8 33653489 to 33653548 59 + TSS region transcription start site region 76828
Tssr76829 8 33653552 to 33653623 71 + TSS region transcription start site region 76829
Tssr76830 8 33653654 to 33653659 5 + TSS region transcription start site region 76830
Tssr76831 8 33654129 to 33654160 31 + TSS region transcription start site region 76831
Tssr76832 8 33657967 to 33657974 7 + TSS region transcription start site region 76832
Tssr76833 8 33657985 to 33658000 15 + TSS region transcription start site region 76833
Tssr2541 8 33658005 to 33658013 8 + TSS region transcription start site region 2541
Tssr80852 8 33660605 to 33660618 13 - TSS region transcription start site region 80852
Tssr80853 8 33660645 to 33660654 9 - TSS region transcription start site region 80853
Tssr76834 8 33660800 to 33660808 8 + TSS region transcription start site region 76834
Tssr76835 8 33660873 to 33660898 25 + TSS region transcription start site region 76835
Tssr80854 8 33664468 to 33664469 1 - TSS region transcription start site region 80854
Tssr80855 8 33666371 to 33666377 6 - TSS region transcription start site region 80855
Tssr76836 8 33667809 to 33667826 17 + TSS region transcription start site region 76836
Tssr76837 8 33668447 to 33668461 14 + TSS region transcription start site region 76837
Tssr76838 8 33673903 to 33673943 40 + TSS region transcription start site region 76838