Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:27250840-29121827

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Poats1 8 17032610 to 28359439 11326829 QTL post-ovarectomy adrenal tumor susceptibility 1
Tssr80801 8 27250834 to 27250857 23 - TSS region transcription start site region 80801
Cpgi20220 8 27259938 to 27261627 1689 CpG island CpG island 20220
Tssr76776 8 27260321 to 27260332 11 + TSS region transcription start site region 76776
Eif4ebp1 8 27260327 to 27275656 15329 + protein coding gene eukaryotic translation initiation factor 4E binding protein 1
Tssr76777 8 27260332 to 27260370 38 + TSS region transcription start site region 76777
Tssr76778 8 27260395 to 27260418 23 + TSS region transcription start site region 76778
Tssr76779 8 27260429 to 27260462 33 + TSS region transcription start site region 76779
Tssr76780 8 27260497 to 27260509 12 + TSS region transcription start site region 76780
Tssr76781 8 27261423 to 27261433 10 + TSS region transcription start site region 76781
Tssr76782 8 27262746 to 27262760 14 + TSS region transcription start site region 76782
5430430B14Rik 8 27279441 to 27281070 1629 + unclassified gene RIKEN cDNA 5430430B14 gene
Gm18266 8 27294677 to 27295815 1138 + pseudogene predicted gene, 18266
Cpgi20221 8 27295999 to 27296233 234 CpG island CpG island 20221
Gm9731 8 27296055 to 27296801 746 + pseudogene predicted gene 9731
Tssr80802 8 27296283 to 27296297 14 - TSS region transcription start site region 80802
Tssr80803 8 27296300 to 27296314 14 - TSS region transcription start site region 80803
Tssr76783 8 27296324 to 27296356 32 + TSS region transcription start site region 76783
Tssr76784 8 27343981 to 27343992 11 + TSS region transcription start site region 76784
Tex24 8 27344394 to 27349188 4794 + protein coding gene testis expressed gene 24
Chrnb3 8 27368711 to 27399730 31019 + protein coding gene cholinergic receptor, nicotinic, beta polypeptide 3
Tssr76785 8 27368793 to 27368807 14 + TSS region transcription start site region 76785
Chrna6 8 27403212 to 27413944 10732 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 6
Tssr80804 8 27413879 to 27413892 13 - TSS region transcription start site region 80804
Tssr80805 8 27413937 to 27413946 9 - TSS region transcription start site region 80805
Gm24410 8 27421324 to 27421430 106 - snRNA gene predicted gene, 24410
Gm45861 8 27447100 to 27620917 173817 + protein coding gene predicted gene 45861
Tssr76786 8 27447664 to 27447681 17 + TSS region transcription start site region 76786
Poteg 8 27447670 to 27495172 47502 + protein coding gene POTE ankyrin domain family, member G
Tssr76787 8 27447690 to 27447701 11 + TSS region transcription start site region 76787
Tssr76788 8 27447705 to 27447711 6 + TSS region transcription start site region 76788
Tssr76789 8 27471575 to 27471582 7 + TSS region transcription start site region 76789
Gm1698 8 27604351 to 27620452 16101 + lincRNA gene predicted gene 1698
Gm44493 8 27615817 to 27615904 87 + miRNA gene predicted gene, 44493
Gm24202 8 27761009 to 27761111 102 - snRNA gene predicted gene, 24202
Gm39153 8 27893861 to 27896154 2293 - lncRNA gene predicted gene, 39153
Tssr2532 8 27945327 to 27945328 1 + TSS region transcription start site region 2532
Gm45751 8 28082694 to 28084266 1572 - unclassified gene predicted gene 45751
Gm8096 8 28083330 to 28084920 1590 - pseudogene predicted gene 8096
Tssr2533 8 28084788 to 28084812 24 + TSS region transcription start site region 2533
1700008N11Rik 8 28084828 to 28085596 768 + lincRNA gene RIKEN cDNA 1700008N11 gene
Gm8100 8 28185840 to 28186827 987 + pseudogene predicted gene 8100
Tssr76790 8 28520658 to 28520660 2 + TSS region transcription start site region 76790
Gm8110 8 28520984 to 28521835 851 + pseudogene predicted gene 8110
Gm45571 8 28527826 to 28529717 1891 - lincRNA gene predicted gene 45571
Tssr2534 8 28585930 to 28585936 6 + TSS region transcription start site region 2534
Gm26795 8 28593521 to 28594554 1033 + lincRNA gene predicted gene, 26795
Tssr76791 8 28593523 to 28593538 15 + TSS region transcription start site region 76791
Unc5d 8 28646717 to 29219636 572919 - protein coding gene unc-5 netrin receptor D
Tssr80806 8 28651170 to 28651174 4 - TSS region transcription start site region 80806
Gm32505 8 28696941 to 28708641 11700 + lncRNA gene predicted gene, 32505
D8Mit289 8 28787999 to 28788147 148 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 289
Tssr80807 8 28829431 to 28829436 5 - TSS region transcription start site region 80807
Gm9911 8 29084685 to 29087486 2801 - unclassified gene predicted gene 9911
Gm45652 8 29088073 to 29091903 3830 - unclassified gene predicted gene 45652
Svet1 8 29108837 to 29112776 3939 - unclassified gene subventricular expressed transcript 1