Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:27168212-27648944

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab11fip1 8 27138773 to 27174646 35873 - protein coding gene RAB11 family interacting protein 1 (class I)
Gm45267 8 27159828 to 27170691 10863 + antisense lncRNA gene predicted gene 45267
Gm45266 8 27168840 to 27171012 2172 - unclassified gene predicted gene 45266
Tssr80784 8 27168878 to 27168885 7 - TSS region transcription start site region 80784
Tssr76770 8 27172283 to 27172291 8 + TSS region transcription start site region 76770
Tssr76771 8 27172716 to 27172763 47 + TSS region transcription start site region 76771
Cpgi20217 8 27173980 to 27174932 952 CpG island CpG island 20217
Tssr80785 8 27174623 to 27174651 28 - TSS region transcription start site region 80785
Tssr76772 8 27174811 to 27174830 19 + TSS region transcription start site region 76772
Tssr76773 8 27175311 to 27175318 7 + TSS region transcription start site region 76773
Tssr76774 8 27175334 to 27175343 9 + TSS region transcription start site region 76774
Tssr2531 8 27175651 to 27175684 33 - TSS region transcription start site region 2531
Tssr76775 8 27177368 to 27177390 22 + TSS region transcription start site region 76775
Got1l1 8 27197459 to 27223828 26369 - protein coding gene glutamic-oxaloacetic transaminase 1-like 1
Tssr80786 8 27202478 to 27202481 3 - TSS region transcription start site region 80786
Tssr80787 8 27202524 to 27202535 11 - TSS region transcription start site region 80787
Tssr80788 8 27202542 to 27202557 15 - TSS region transcription start site region 80788
Tssr80789 8 27202567 to 27202581 14 - TSS region transcription start site region 80789
Cpgi20218 8 27206431 to 27206877 446 CpG island CpG island 20218
Tssr80790 8 27223784 to 27223798 14 - TSS region transcription start site region 80790
Tssr80791 8 27223814 to 27223833 19 - TSS region transcription start site region 80791
Adrb3 8 27225776 to 27230807 5031 - protein coding gene adrenergic receptor, beta 3
Cpgi20219 8 27227205 to 27228513 1308 CpG island CpG island 20219
Tssr80792 8 27227534 to 27227544 10 - TSS region transcription start site region 80792
Tssr80793 8 27228034 to 27228041 7 - TSS region transcription start site region 80793
Tssr80794 8 27228213 to 27228229 16 - TSS region transcription start site region 80794
Tssr80795 8 27228512 to 27228519 7 - TSS region transcription start site region 80795
Tssr80796 8 27228529 to 27228556 27 - TSS region transcription start site region 80796
Tssr80797 8 27228581 to 27228587 6 - TSS region transcription start site region 80797
Tssr80798 8 27230805 to 27230847 42 - TSS region transcription start site region 80798
Gm45470 8 27230949 to 27238559 7610 + antisense lncRNA gene predicted gene 45470
Tssr80799 8 27234424 to 27234458 34 - TSS region transcription start site region 80799
Tssr80800 8 27240289 to 27240292 3 - TSS region transcription start site region 80800
Tssr80801 8 27250834 to 27250857 23 - TSS region transcription start site region 80801
Cpgi20220 8 27259938 to 27261627 1689 CpG island CpG island 20220
Tssr76776 8 27260321 to 27260332 11 + TSS region transcription start site region 76776
Eif4ebp1 8 27260327 to 27275656 15329 + protein coding gene eukaryotic translation initiation factor 4E binding protein 1
Tssr76777 8 27260332 to 27260370 38 + TSS region transcription start site region 76777
Tssr76778 8 27260395 to 27260418 23 + TSS region transcription start site region 76778
Tssr76779 8 27260429 to 27260462 33 + TSS region transcription start site region 76779
Tssr76780 8 27260497 to 27260509 12 + TSS region transcription start site region 76780
Tssr76781 8 27261423 to 27261433 10 + TSS region transcription start site region 76781
Tssr76782 8 27262746 to 27262760 14 + TSS region transcription start site region 76782
5430430B14Rik 8 27279441 to 27281070 1629 + unclassified gene RIKEN cDNA 5430430B14 gene
Gm18266 8 27294677 to 27295815 1138 + pseudogene predicted gene, 18266
Cpgi20221 8 27295999 to 27296233 234 CpG island CpG island 20221
Gm9731 8 27296055 to 27296801 746 + pseudogene predicted gene 9731
Tssr80802 8 27296283 to 27296297 14 - TSS region transcription start site region 80802
Tssr80803 8 27296300 to 27296314 14 - TSS region transcription start site region 80803
Tssr76783 8 27296324 to 27296356 32 + TSS region transcription start site region 76783
Tssr76784 8 27343981 to 27343992 11 + TSS region transcription start site region 76784
Tex24 8 27344394 to 27349188 4794 + protein coding gene testis expressed gene 24
Chrnb3 8 27368711 to 27399730 31019 + protein coding gene cholinergic receptor, nicotinic, beta polypeptide 3
Tssr76785 8 27368793 to 27368807 14 + TSS region transcription start site region 76785
Chrna6 8 27403212 to 27413944 10732 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 6
Tssr80804 8 27413879 to 27413892 13 - TSS region transcription start site region 80804
Tssr80805 8 27413937 to 27413946 9 - TSS region transcription start site region 80805
Gm24410 8 27421324 to 27421430 106 - snRNA gene predicted gene, 24410
Gm45861 8 27447100 to 27620917 173817 + protein coding gene predicted gene 45861
Tssr76786 8 27447664 to 27447681 17 + TSS region transcription start site region 76786
Poteg 8 27447670 to 27495172 47502 + protein coding gene POTE ankyrin domain family, member G
Tssr76787 8 27447690 to 27447701 11 + TSS region transcription start site region 76787
Tssr76788 8 27447705 to 27447711 6 + TSS region transcription start site region 76788
Tssr76789 8 27471575 to 27471582 7 + TSS region transcription start site region 76789
Gm1698 8 27604351 to 27620452 16101 + lincRNA gene predicted gene 1698
Gm44493 8 27615817 to 27615904 87 + miRNA gene predicted gene, 44493