Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:27029577-31409623

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210 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Poats1 8 17032610 to 28359439 11326829 QTL post-ovarectomy adrenal tumor susceptibility 1
Erlin2 8 27023266 to 27039437 16171 + protein coding gene ER lipid raft associated 2
Tssr2530 8 27031297 to 27031337 40 + TSS region transcription start site region 2530
Tssr76761 8 27038154 to 27038167 13 + TSS region transcription start site region 76761
Cpgi20210 8 27042367 to 27043198 831 CpG island CpG island 20210
Proscos 8 27042377 to 27043042 665 - antisense lncRNA gene proline synthetase co-transcribed, opposite strand
Plpbp 8 27042555 to 27056132 13577 + protein coding gene pyridoxal phosphate binding protein
Tssr76762 8 27042558 to 27042589 31 + TSS region transcription start site region 76762
Tssr76763 8 27042592 to 27042630 38 + TSS region transcription start site region 76763
Tssr80760 8 27042682 to 27042704 22 - TSS region transcription start site region 80760
Tssr80761 8 27042726 to 27042741 15 - TSS region transcription start site region 80761
Tssr80762 8 27042981 to 27043004 23 - TSS region transcription start site region 80762
Tssr80763 8 27043009 to 27043032 23 - TSS region transcription start site region 80763
Tssr80764 8 27043034 to 27043047 13 - TSS region transcription start site region 80764
Tssr80765 8 27043050 to 27043061 11 - TSS region transcription start site region 80765
Cpgi20211 8 27084951 to 27086668 1717 CpG island CpG island 20211
Tssr76764 8 27085520 to 27085580 60 + TSS region transcription start site region 76764
Tssr76765 8 27085583 to 27085592 9 + TSS region transcription start site region 76765
Adgra2 8 27085583 to 27123436 37853 + protein coding gene adhesion G protein-coupled receptor A2
Tssr76766 8 27085835 to 27085888 53 + TSS region transcription start site region 76766
Gm39151 8 27086269 to 27107449 21180 - lncRNA gene predicted gene, 39151
Cpgi20212 8 27086826 to 27087128 302 CpG island CpG island 20212
Tssr80766 8 27107442 to 27107480 38 - TSS region transcription start site region 80766
Cpgi20213 8 27120984 to 27122194 1210 CpG island CpG island 20213
Brf2 8 27123364 to 27128680 5316 - protein coding gene BRF2, RNA polymerase III transcription initiation factor 50kDa subunit
Cpgi20214 8 27128242 to 27128782 540 CpG island CpG island 20214
Tssr80767 8 27128615 to 27128687 72 - TSS region transcription start site region 80767
Rab11fip1 8 27138773 to 27174646 35873 - protein coding gene RAB11 family interacting protein 1 (class I)
Tssr80768 8 27140880 to 27140885 5 - TSS region transcription start site region 80768
Tssr80769 8 27141449 to 27141462 13 - TSS region transcription start site region 80769
Tssr76767 8 27141458 to 27141469 11 + TSS region transcription start site region 76767
Tssr80770 8 27141473 to 27141514 41 - TSS region transcription start site region 80770
Tssr80771 8 27141520 to 27141531 11 - TSS region transcription start site region 80771
Tssr80772 8 27141532 to 27141558 26 - TSS region transcription start site region 80772
Tssr80773 8 27141564 to 27141584 20 - TSS region transcription start site region 80773
Tssr80774 8 27141606 to 27141623 17 - TSS region transcription start site region 80774
Tssr80775 8 27141705 to 27141720 15 - TSS region transcription start site region 80775
Tssr80776 8 27141876 to 27141892 16 - TSS region transcription start site region 80776
Tssr80777 8 27141918 to 27141933 15 - TSS region transcription start site region 80777
Tssr80778 8 27142004 to 27142044 40 - TSS region transcription start site region 80778
Tssr80779 8 27142314 to 27142325 11 - TSS region transcription start site region 80779
Tssr80780 8 27142335 to 27142353 18 - TSS region transcription start site region 80780
4933416M07Rik 8 27142910 to 27146304 3394 + antisense lncRNA gene RIKEN cDNA 4933416M07 gene
Cpgi20215 8 27143085 to 27143378 293 CpG island CpG island 20215
Tssr76768 8 27143147 to 27143158 11 + TSS region transcription start site region 76768
Tssr76769 8 27143169 to 27143181 12 + TSS region transcription start site region 76769
Tssr80781 8 27154722 to 27154745 23 - TSS region transcription start site region 80781
Tssr80782 8 27156336 to 27156373 37 - TSS region transcription start site region 80782
Gm45267 8 27159828 to 27170691 10863 + antisense lncRNA gene predicted gene 45267
Cpgi20216 8 27160483 to 27160727 244 CpG island CpG island 20216
Tssr80783 8 27167086 to 27167090 4 - TSS region transcription start site region 80783
Gm45266 8 27168840 to 27171012 2172 - unclassified gene predicted gene 45266
Tssr80784 8 27168878 to 27168885 7 - TSS region transcription start site region 80784
Tssr76770 8 27172283 to 27172291 8 + TSS region transcription start site region 76770
Tssr76771 8 27172716 to 27172763 47 + TSS region transcription start site region 76771
Cpgi20217 8 27173980 to 27174932 952 CpG island CpG island 20217
Tssr80785 8 27174623 to 27174651 28 - TSS region transcription start site region 80785
Tssr76772 8 27174811 to 27174830 19 + TSS region transcription start site region 76772
Tssr76773 8 27175311 to 27175318 7 + TSS region transcription start site region 76773
Tssr76774 8 27175334 to 27175343 9 + TSS region transcription start site region 76774
Tssr2531 8 27175651 to 27175684 33 - TSS region transcription start site region 2531
Tssr76775 8 27177368 to 27177390 22 + TSS region transcription start site region 76775
Got1l1 8 27197459 to 27223828 26369 - protein coding gene glutamic-oxaloacetic transaminase 1-like 1
Tssr80786 8 27202478 to 27202481 3 - TSS region transcription start site region 80786
Tssr80787 8 27202524 to 27202535 11 - TSS region transcription start site region 80787
Tssr80788 8 27202542 to 27202557 15 - TSS region transcription start site region 80788
Tssr80789 8 27202567 to 27202581 14 - TSS region transcription start site region 80789
Cpgi20218 8 27206431 to 27206877 446 CpG island CpG island 20218
Tssr80790 8 27223784 to 27223798 14 - TSS region transcription start site region 80790
Tssr80791 8 27223814 to 27223833 19 - TSS region transcription start site region 80791
Adrb3 8 27225776 to 27230807 5031 - protein coding gene adrenergic receptor, beta 3
Cpgi20219 8 27227205 to 27228513 1308 CpG island CpG island 20219
Tssr80792 8 27227534 to 27227544 10 - TSS region transcription start site region 80792
Tssr80793 8 27228034 to 27228041 7 - TSS region transcription start site region 80793
Tssr80794 8 27228213 to 27228229 16 - TSS region transcription start site region 80794
Tssr80795 8 27228512 to 27228519 7 - TSS region transcription start site region 80795
Tssr80796 8 27228529 to 27228556 27 - TSS region transcription start site region 80796
Tssr80797 8 27228581 to 27228587 6 - TSS region transcription start site region 80797
Tssr80798 8 27230805 to 27230847 42 - TSS region transcription start site region 80798
Gm45470 8 27230949 to 27238559 7610 + antisense lncRNA gene predicted gene 45470
Tssr80799 8 27234424 to 27234458 34 - TSS region transcription start site region 80799
Tssr80800 8 27240289 to 27240292 3 - TSS region transcription start site region 80800
Tssr80801 8 27250834 to 27250857 23 - TSS region transcription start site region 80801
Cpgi20220 8 27259938 to 27261627 1689 CpG island CpG island 20220
Tssr76776 8 27260321 to 27260332 11 + TSS region transcription start site region 76776
Eif4ebp1 8 27260327 to 27275656 15329 + protein coding gene eukaryotic translation initiation factor 4E binding protein 1
Tssr76777 8 27260332 to 27260370 38 + TSS region transcription start site region 76777
Tssr76778 8 27260395 to 27260418 23 + TSS region transcription start site region 76778
Tssr76779 8 27260429 to 27260462 33 + TSS region transcription start site region 76779
Tssr76780 8 27260497 to 27260509 12 + TSS region transcription start site region 76780
Tssr76781 8 27261423 to 27261433 10 + TSS region transcription start site region 76781
Tssr76782 8 27262746 to 27262760 14 + TSS region transcription start site region 76782
5430430B14Rik 8 27279441 to 27281070 1629 + unclassified gene RIKEN cDNA 5430430B14 gene
Gm18266 8 27294677 to 27295815 1138 + pseudogene predicted gene, 18266
Cpgi20221 8 27295999 to 27296233 234 CpG island CpG island 20221
Gm9731 8 27296055 to 27296801 746 + pseudogene predicted gene 9731
Tssr80802 8 27296283 to 27296297 14 - TSS region transcription start site region 80802
Tssr80803 8 27296300 to 27296314 14 - TSS region transcription start site region 80803
Tssr76783 8 27296324 to 27296356 32 + TSS region transcription start site region 76783
Tssr76784 8 27343981 to 27343992 11 + TSS region transcription start site region 76784
Tex24 8 27344394 to 27349188 4794 + protein coding gene testis expressed gene 24
Chrnb3 8 27368711 to 27399730 31019 + protein coding gene cholinergic receptor, nicotinic, beta polypeptide 3
Tssr76785 8 27368793 to 27368807 14 + TSS region transcription start site region 76785
Chrna6 8 27403212 to 27413944 10732 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 6
Tssr80804 8 27413879 to 27413892 13 - TSS region transcription start site region 80804
Tssr80805 8 27413937 to 27413946 9 - TSS region transcription start site region 80805
Gm24410 8 27421324 to 27421430 106 - snRNA gene predicted gene, 24410
Gm45861 8 27447100 to 27620917 173817 + protein coding gene predicted gene 45861
Tssr76786 8 27447664 to 27447681 17 + TSS region transcription start site region 76786
Poteg 8 27447670 to 27495172 47502 + protein coding gene POTE ankyrin domain family, member G
Tssr76787 8 27447690 to 27447701 11 + TSS region transcription start site region 76787
Tssr76788 8 27447705 to 27447711 6 + TSS region transcription start site region 76788
Tssr76789 8 27471575 to 27471582 7 + TSS region transcription start site region 76789
Gm1698 8 27604351 to 27620452 16101 + lincRNA gene predicted gene 1698
Gm44493 8 27615817 to 27615904 87 + miRNA gene predicted gene, 44493
Gm24202 8 27761009 to 27761111 102 - snRNA gene predicted gene, 24202
Gm39153 8 27893861 to 27896154 2293 - lncRNA gene predicted gene, 39153
Tssr2532 8 27945327 to 27945328 1 + TSS region transcription start site region 2532
Gm45751 8 28082694 to 28084266 1572 - unclassified gene predicted gene 45751
Gm8096 8 28083330 to 28084920 1590 - pseudogene predicted gene 8096
Tssr2533 8 28084788 to 28084812 24 + TSS region transcription start site region 2533
1700008N11Rik 8 28084828 to 28085596 768 + lincRNA gene RIKEN cDNA 1700008N11 gene
Gm8100 8 28185840 to 28186827 987 + pseudogene predicted gene 8100
Tssr76790 8 28520658 to 28520660 2 + TSS region transcription start site region 76790
Gm8110 8 28520984 to 28521835 851 + pseudogene predicted gene 8110
Gm45571 8 28527826 to 28529717 1891 - lincRNA gene predicted gene 45571
Tssr2534 8 28585930 to 28585936 6 + TSS region transcription start site region 2534
Gm26795 8 28593521 to 28594554 1033 + lincRNA gene predicted gene, 26795
Tssr76791 8 28593523 to 28593538 15 + TSS region transcription start site region 76791
Unc5d 8 28646717 to 29219636 572919 - protein coding gene unc-5 netrin receptor D
Tssr80806 8 28651170 to 28651174 4 - TSS region transcription start site region 80806
Gm32505 8 28696941 to 28708641 11700 + lncRNA gene predicted gene, 32505
D8Mit289 8 28787999 to 28788147 148 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 289
Tssr80807 8 28829431 to 28829436 5 - TSS region transcription start site region 80807
Gm9911 8 29084685 to 29087486 2801 - unclassified gene predicted gene 9911
Gm45652 8 29088073 to 29091903 3830 - unclassified gene predicted gene 45652
Svet1 8 29108837 to 29112776 3939 - unclassified gene subventricular expressed transcript 1
Tssr80808 8 29150543 to 29150587 44 - TSS region transcription start site region 80808
Cpgi20222 8 29218648 to 29220033 1385 CpG island CpG island 20222
Tssr80809 8 29219577 to 29219623 46 - TSS region transcription start site region 80809
Tssr80810 8 29219627 to 29219640 13 - TSS region transcription start site region 80810
Gm32567 8 29228598 to 29235104 6506 - lincRNA gene predicted gene, 32567
Nudc-ps1 8 29286431 to 29286981 550 - pseudogene nuclear distribution gene C homolog (Aspergillus), pseudogene 1
Gm18676 8 29417354 to 29417856 502 - pseudogene predicted gene, 18676
Gm32621 8 29530349 to 29532136 1787 + lncRNA gene predicted gene, 32621
Gm29816 8 29533059 to 29533405 346 - pseudogene predicted gene, 29816
D8Mit96 8 29604682 to 29604792 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 96
Gm32678 8 29610770 to 29614259 3489 - lncRNA gene predicted gene, 32678
Tssr76792 8 29719549 to 29719554 5 + TSS region transcription start site region 76792
D8Mit281 8 30053818 to 30053940 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 281
Gm45492 8 30081673 to 30081960 287 - pseudogene predicted gene 45492
Gm39154 8 30112310 to 30121214 8904 - lincRNA gene predicted gene, 39154
Gm6853 8 30181865 to 30183525 1660 - pseudogene predicted gene 6853
Tssr80811 8 30183963 to 30183967 4 - TSS region transcription start site region 80811
Gm45490 8 30439747 to 30442224 2477 - lincRNA gene predicted gene 45490
Gm45489 8 30482983 to 30513811 30828 - lincRNA gene predicted gene 45489
4933433F19Rik 8 30568395 to 30575573 7178 + lincRNA gene RIKEN cDNA 4933433F19 gene
Tbnq1 8 30800000 to 46900000 16100000 QTL trabecular bone number QTL 1
D8Mit336 8 30909094 to 30909192 98 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 336
Gm32735 8 30915147 to 30916548 1401 + lncRNA gene predicted gene, 32735
Tssr2535 8 30920061 to 30920062 1 + TSS region transcription start site region 2535
D430032J08Rik 8 30942694 to 30946605 3911 unclassified gene RIKEN cDNA D430032J08 gene
Gm32791 8 30942701 to 30959699 16998 - lncRNA gene predicted gene, 32791
Gm32841 8 31001395 to 31009494 8099 - lncRNA gene predicted gene, 32841
Gm45252 8 31003908 to 31004304 396 + pseudogene predicted gene 45252
D8Mit330 8 31009161 to 31009301 140 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-330
Tssr80812 8 31067832 to 31067837 5 - TSS region transcription start site region 80812
Cpgi20223 8 31089358 to 31090226 868 CpG island CpG island 20223
Tssr76793 8 31089575 to 31089593 18 + TSS region transcription start site region 76793
Tssr76794 8 31089606 to 31089760 154 + TSS region transcription start site region 76794
Dusp26 8 31089662 to 31097047 7385 + protein coding gene dual specificity phosphatase 26 (putative)
Tssr76795 8 31090147 to 31090160 13 + TSS region transcription start site region 76795
Tssr76796 8 31091593 to 31091635 42 + TSS region transcription start site region 76796
Tssr76797 8 31106611 to 31106618 7 + TSS region transcription start site region 76797
Gm40484 8 31106629 to 31109225 2596 + lncRNA gene predicted gene, 40484
Cpgi20224 8 31111382 to 31112444 1062 CpG island CpG island 20224
Tssr2536 8 31111593 to 31111614 21 + TSS region transcription start site region 2536
Tssr76798 8 31111789 to 31111799 10 + TSS region transcription start site region 76798
Tssr76799 8 31111816 to 31111891 75 + TSS region transcription start site region 76799
Rnf122 8 31111820 to 31131482 19662 + protein coding gene ring finger protein 122
Tssr76800 8 31111896 to 31111907 11 + TSS region transcription start site region 76800
Tssr76801 8 31115038 to 31115063 25 + TSS region transcription start site region 76801
Tssr76802 8 31115092 to 31115103 11 + TSS region transcription start site region 76802
Tssr76803 8 31129402 to 31129412 10 + TSS region transcription start site region 76803
Snord13 8 31149861 to 31149958 97 - snoRNA gene small nucleolar RNA, C/D box 13
Cpgi20225 8 31149943 to 31150372 429 CpG island CpG island 20225
Tssr80813 8 31149966 to 31149970 4 - TSS region transcription start site region 80813
Tssr76804 8 31150307 to 31150346 39 + TSS region transcription start site region 76804
Tti2 8 31150316 to 31164703 14387 + protein coding gene TELO2 interacting protein 2
Tssr76805 8 31150431 to 31150434 3 + TSS region transcription start site region 76805
Cpgi20226 8 31150600 to 31151282 682 CpG island CpG island 20226
Mak16 8 31159468 to 31168724 9256 - protein coding gene MAK16 homolog
Tssr80814 8 31163096 to 31163106 10 - TSS region transcription start site region 80814
Tssr80815 8 31167816 to 31167824 8 - TSS region transcription start site region 80815
Cpgi20227 8 31168260 to 31169202 942 CpG island CpG island 20227
Tssr80816 8 31168699 to 31168746 47 - TSS region transcription start site region 80816
Tssr80817 8 31168747 to 31168769 22 - TSS region transcription start site region 80817
Tssr76806 8 31168811 to 31168884 73 + TSS region transcription start site region 76806
Cpgi20228 8 31187140 to 31187818 678 CpG island CpG island 20228
Tssr76807 8 31187317 to 31187357 40 + TSS region transcription start site region 76807