Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25963997-27104287

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hgsnat 8 25944459 to 25976744 32285 - protein coding gene heparan-alpha-glucosaminide N-acetyltransferase
Cpgi20196 8 25976157 to 25976959 802 CpG island CpG island 20196
Tssr80741 8 25976645 to 25976652 7 - TSS region transcription start site region 80741
Tssr80742 8 25976666 to 25976716 50 - TSS region transcription start site region 80742
Tssr2528 8 25976721 to 25976726 5 - TSS region transcription start site region 2528
Tssr80743 8 25976730 to 25976735 5 - TSS region transcription start site region 80743
Tssr80744 8 25976736 to 25976741 5 - TSS region transcription start site region 80744
Tssr80745 8 25976747 to 25976758 11 - TSS region transcription start site region 80745
Pomk 8 25980604 to 25994121 13517 - protein coding gene protein-O-mannose kinase
Cpgi20197 8 25986100 to 25986526 426 CpG island CpG island 20197
Tssr80746 8 25990092 to 25990115 23 - TSS region transcription start site region 80746
Gm31402 8 25992654 to 25998229 5575 + lncRNA gene predicted gene, 31402
Cpgi20198 8 25993783 to 25994392 609 CpG island CpG island 20198
Tssr80747 8 25994103 to 25994144 41 - TSS region transcription start site region 80747
Fnta 8 25998722 to 26015601 16879 - protein coding gene farnesyltransferase, CAAX box, alpha
D8Rck2 8 25999008 to 25999227 219 DNA segment DNA segment, Chr 8, Rockefeller University 2
Tssr80748 8 26001970 to 26001987 17 - TSS region transcription start site region 80748
Cpgi20199 8 26014836 to 26015769 933 CpG island CpG island 20199
Tssr80749 8 26015577 to 26015626 49 - TSS region transcription start site region 80749
Hook3 8 26021421 to 26119224 97803 - protein coding gene hook microtubule tethering protein 3
Gm45411 8 26023410 to 26032253 8843 + antisense lncRNA gene predicted gene 45411
Tssr80750 8 26026700 to 26026705 5 - TSS region transcription start site region 80750
5730564C23Rik 8 26051606 to 26052545 939 unclassified gene RIKEN cDNA 5730564C23 gene
Tssr80751 8 26058061 to 26058100 39 - TSS region transcription start site region 80751
Tssr80752 8 26059375 to 26059381 6 - TSS region transcription start site region 80752
Gm45413 8 26062515 to 26066052 3537 - unclassified gene predicted gene 45413
Tssr76734 8 26082603 to 26082625 22 + TSS region transcription start site region 76734
1700047A11Rik 8 26082609 to 26096520 13911 + antisense lncRNA gene RIKEN cDNA 1700047A11 gene
Tssr80753 8 26089873 to 26089883 10 - TSS region transcription start site region 80753
Gm18364 8 26103616 to 26104228 612 + pseudogene predicted gene, 18364
Cpgi20200 8 26118475 to 26120031 1556 CpG island CpG island 20200
Tssr80754 8 26119125 to 26119233 108 - TSS region transcription start site region 80754
Tssr80755 8 26119292 to 26119303 11 - TSS region transcription start site region 80755
Tssr76735 8 26119361 to 26119368 7 + TSS region transcription start site region 76735
Rnf170 8 26119365 to 26143874 24509 + protein coding gene ring finger protein 170
Tssr76736 8 26119461 to 26119539 78 + TSS region transcription start site region 76736
Gm45692 8 26119534 to 26160819 41285 + protein coding gene predicted gene 45692
Tssr76737 8 26119611 to 26119682 71 + TSS region transcription start site region 76737
Gm45251 8 26131178 to 26132642 1464 - unclassified gene predicted gene 45251
Gm45250 8 26151888 to 26155479 3591 - lincRNA gene predicted gene 45250
Cpgi20201 8 26157832 to 26159191 1359 CpG island CpG island 20201
Tssr80756 8 26158024 to 26158058 34 - TSS region transcription start site region 80756
Thap1 8 26158169 to 26164151 5982 + protein coding gene THAP domain containing, apoptosis associated protein 1
Tssr76738 8 26158186 to 26158252 66 + TSS region transcription start site region 76738
Tssr80757 8 26158545 to 26158580 35 - TSS region transcription start site region 80757
Cpgi20202 8 26184874 to 26185078 204 CpG island CpG island 20202
Gm44299 8 26219461 to 26219549 88 + miRNA gene predicted gene, 44299
Gm22227 8 26240150 to 26240408 258 - unclassified non-coding RNA gene predicted gene, 22227
Gm45305 8 26242724 to 26244051 1327 + lincRNA gene predicted gene 45305
Cpgi20203 8 26258561 to 26258850 289 CpG island CpG island 20203
Tssr76739 8 26266857 to 26266894 37 + TSS region transcription start site region 76739
Gm31727 8 26266977 to 26273555 6578 + lincRNA gene predicted gene, 31727
Gm31784 8 26298352 to 26312334 13982 - lincRNA gene predicted gene, 31784
Gm45307 8 26298634 to 26354163 55529 + lincRNA gene predicted gene 45307
Gm31843 8 26381686 to 26389138 7452 + lncRNA gene predicted gene, 31843
Gm39148 8 26386110 to 26389066 2956 - lncRNA gene predicted gene, 39148
Gm31898 8 26428281 to 26435713 7432 - lincRNA gene predicted gene, 31898
Gm45580 8 26438829 to 26440492 1663 + lincRNA gene predicted gene 45580
D8Mit290 8 26448465 to 26448582 117 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 290
Gm31983 8 26452793 to 26468559 15766 - lincRNA gene predicted gene, 31983
Cpgi20204 8 26509929 to 26510247 318 CpG island CpG island 20204
Cpgi20205 8 26533997 to 26534287 290 CpG island CpG island 20205
D8Mit356 8 26552986 to 26553235 249 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 356
Gm39149 8 26560461 to 26579802 19341 - lincRNA gene predicted gene, 39149
Gm32050 8 26626744 to 26627480 736 - lincRNA gene predicted gene, 32050
Gm45584 8 26637675 to 26639952 2277 + lincRNA gene predicted gene 45584
Gm32098 8 26665893 to 26668306 2413 - lincRNA gene predicted gene, 32098
Tssr76740 8 26698888 to 26698925 37 + TSS region transcription start site region 76740
Tssr2529 8 26717318 to 26717321 3 + TSS region transcription start site region 2529
D8Mit223 8 26719787 to 26719909 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 223
Tssr76741 8 26724486 to 26724491 5 + TSS region transcription start site region 76741
Gm45646 8 26745929 to 26760561 14632 - lincRNA gene predicted gene 45646
Gm46067 8 26768747 to 26770539 1792 - lncRNA gene predicted gene, 46067
Gm45647 8 26780315 to 26780509 194 + pseudogene predicted gene 45647
Cpgi20206 8 26780580 to 26780928 348 CpG island CpG island 20206
2310008N11Rik 8 26814595 to 26824423 9828 - lincRNA gene RIKEN cDNA 2310008N11 gene
Gm29728 8 26823247 to 26823772 525 + pseudogene predicted gene, 29728
Tssr80758 8 26824418 to 26824430 12 - TSS region transcription start site region 80758
Tssr76742 8 26847053 to 26847058 5 + TSS region transcription start site region 76742
Gm39150 8 26960786 to 26977077 16291 - lncRNA gene predicted gene, 39150
Gm45572 8 26966434 to 26967474 1040 + lincRNA gene predicted gene 45572
Cpgi20207 8 26966489 to 26966716 227 CpG island CpG island 20207
Tssr76743 8 26975937 to 26975964 27 + TSS region transcription start site region 76743
Tssr76744 8 26976019 to 26976022 3 + TSS region transcription start site region 76744
Cpgi20208 8 26976269 to 26980076 3807 CpG island CpG island 20208
Tssr80759 8 26976948 to 26976986 38 - TSS region transcription start site region 80759
Tssr76745 8 26977106 to 26977127 21 + TSS region transcription start site region 76745
Tssr76746 8 26977137 to 26977162 25 + TSS region transcription start site region 76746
Tssr76747 8 26977302 to 26977344 42 + TSS region transcription start site region 76747
Zfp703 8 26977336 to 26981462 4126 + protein coding gene zinc finger protein 703
Tssr76748 8 26977370 to 26977398 28 + TSS region transcription start site region 76748
Gm45371 8 26977391 to 26980001 2610 - antisense lncRNA gene predicted gene 45371
Tssr76749 8 26977458 to 26977490 32 + TSS region transcription start site region 76749
Tssr76750 8 26978150 to 26978190 40 + TSS region transcription start site region 76750
Tssr76751 8 26978611 to 26978618 7 + TSS region transcription start site region 76751
Tssr76752 8 26978769 to 26978795 26 + TSS region transcription start site region 76752
Tssr76753 8 26979224 to 26979250 26 + TSS region transcription start site region 76753
Tssr76754 8 26979942 to 26979945 3 + TSS region transcription start site region 76754
Tssr76755 8 26980112 to 26980127 15 + TSS region transcription start site region 76755
Tssr76756 8 26980470 to 26980481 11 + TSS region transcription start site region 76756
Gm45370 8 26996250 to 26998954 2704 + lincRNA gene predicted gene 45370
Gm32389 8 27008467 to 27012903 4436 + lincRNA gene predicted gene, 32389
Gm19164 8 27019466 to 27019990 524 - pseudogene predicted gene, 19164
Tssr76757 8 27022073 to 27022079 6 + TSS region transcription start site region 76757
Erlin2 8 27023266 to 27039437 16171 + protein coding gene ER lipid raft associated 2
Tssr76758 8 27023364 to 27023380 16 + TSS region transcription start site region 76758
Cpgi20209 8 27023367 to 27024277 910 CpG island CpG island 20209
Tssr76759 8 27023793 to 27023810 17 + TSS region transcription start site region 76759
Tssr76760 8 27023812 to 27023937 125 + TSS region transcription start site region 76760
Tssr2530 8 27031297 to 27031337 40 + TSS region transcription start site region 2530
Tssr76761 8 27038154 to 27038167 13 + TSS region transcription start site region 76761
Cpgi20210 8 27042367 to 27043198 831 CpG island CpG island 20210
Proscos 8 27042377 to 27043042 665 - antisense lncRNA gene proline synthetase co-transcribed, opposite strand
Plpbp 8 27042555 to 27056132 13577 + protein coding gene pyridoxal phosphate binding protein
Tssr76762 8 27042558 to 27042589 31 + TSS region transcription start site region 76762
Tssr76763 8 27042592 to 27042630 38 + TSS region transcription start site region 76763
Tssr80760 8 27042682 to 27042704 22 - TSS region transcription start site region 80760
Tssr80761 8 27042726 to 27042741 15 - TSS region transcription start site region 80761
Tssr80762 8 27042981 to 27043004 23 - TSS region transcription start site region 80762
Tssr80763 8 27043009 to 27043032 23 - TSS region transcription start site region 80763
Tssr80764 8 27043034 to 27043047 13 - TSS region transcription start site region 80764
Tssr80765 8 27043050 to 27043061 11 - TSS region transcription start site region 80765
Cpgi20211 8 27084951 to 27086668 1717 CpG island CpG island 20211
Tssr76764 8 27085520 to 27085580 60 + TSS region transcription start site region 76764
Adgra2 8 27085583 to 27123436 37853 + protein coding gene adhesion G protein-coupled receptor A2
Tssr76765 8 27085583 to 27085592 9 + TSS region transcription start site region 76765
Tssr76766 8 27085835 to 27085888 53 + TSS region transcription start site region 76766
Gm39151 8 27086269 to 27107449 21180 - lncRNA gene predicted gene, 39151
Cpgi20212 8 27086826 to 27087128 302 CpG island CpG island 20212