Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25636434-28297474

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308 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nsd3 8 25601601 to 25719667 118066 + protein coding gene nuclear receptor binding SET domain protein 3
Tssr76697 8 25640705 to 25640728 23 + TSS region transcription start site region 76697
Tssr76698 8 25640733 to 25640841 108 + TSS region transcription start site region 76698
Tssr76699 8 25640901 to 25640948 47 + TSS region transcription start site region 76699
Tssr76700 8 25643939 to 25643947 8 + TSS region transcription start site region 76700
Tssr76701 8 25649397 to 25649415 18 + TSS region transcription start site region 76701
Tssr80724 8 25661474 to 25661480 6 - TSS region transcription start site region 80724
Tssr76702 8 25673979 to 25673991 12 + TSS region transcription start site region 76702
Tssr76703 8 25677002 to 25677007 5 + TSS region transcription start site region 76703
Gm23094 8 25678950 to 25679271 321 + unclassified non-coding RNA gene predicted gene, 23094
Gm45343 8 25687369 to 25688196 827 + unclassified gene predicted gene 45343
Tssr76704 8 25687684 to 25687705 21 + TSS region transcription start site region 76704
Gm45342 8 25692146 to 25693508 1362 + unclassified gene predicted gene 45342
Tssr76705 8 25716572 to 25716584 12 + TSS region transcription start site region 76705
Cpgi20190 8 25719899 to 25720697 798 CpG island CpG island 20190
Plpp5 8 25720037 to 25724887 4850 + protein coding gene phospholipid phosphatase 5
Tssr76706 8 25720042 to 25720053 11 + TSS region transcription start site region 76706
Tssr76707 8 25720054 to 25720099 45 + TSS region transcription start site region 76707
Tssr76708 8 25720135 to 25720148 13 + TSS region transcription start site region 76708
Tssr76709 8 25720259 to 25720304 45 + TSS region transcription start site region 76709
Tssr76710 8 25720459 to 25720474 15 + TSS region transcription start site region 76710
Ddhd2 8 25725324 to 25754407 29083 - protein coding gene DDHD domain containing 2
D8Ertd317e 8 25729970 to 25730212 242 DNA segment DNA segment, Chr 8, ERATO Doi 317, expressed
6430710M23Rik 8 25744390 to 25745580 1190 - unclassified gene RIKEN cDNA 6430710M23 gene
Cpgi20191 8 25753744 to 25754898 1154 CpG island CpG island 20191
Tssr80725 8 25754214 to 25754250 36 - TSS region transcription start site region 80725
Tssr2526 8 25754252 to 25754275 23 - TSS region transcription start site region 2526
Tssr80726 8 25754352 to 25754424 72 - TSS region transcription start site region 80726
Tssr76711 8 25754462 to 25754485 23 + TSS region transcription start site region 76711
Gm17484 8 25754480 to 25769704 15224 + lincRNA gene predicted gene, 17484
Tssr76712 8 25754492 to 25754514 22 + TSS region transcription start site region 76712
Bag4 8 25764538 to 25785209 20671 - protein coding gene BCL2-associated athanogene 4
Tssr80727 8 25769583 to 25769593 10 - TSS region transcription start site region 80727
Gm19075 8 25775836 to 25776513 677 - pseudogene predicted gene, 19075
Cpgi20192 8 25784461 to 25786114 1653 CpG island CpG island 20192
Tssr80728 8 25785154 to 25785215 61 - TSS region transcription start site region 80728
Tssr80729 8 25785223 to 25785230 7 - TSS region transcription start site region 80729
Tssr76713 8 25785289 to 25785319 30 + TSS region transcription start site region 76713
Lsm1 8 25785536 to 25803975 18439 + protein coding gene LSM1 homolog, mRNA degradation associated
Tssr76714 8 25785538 to 25785587 49 + TSS region transcription start site region 76714
Tssr76715 8 25785597 to 25785603 6 + TSS region transcription start site region 76715
Gm46037 8 25788823 to 25789353 530 - pseudogene predicted gene, 46037
Tssr80730 8 25789315 to 25789324 9 - TSS region transcription start site region 80730
Tssr80731 8 25797072 to 25797077 5 - TSS region transcription start site region 80731
Tssr80732 8 25808248 to 25808250 2 - TSS region transcription start site region 80732
Tssr76716 8 25808494 to 25808513 19 + TSS region transcription start site region 76716
Star 8 25808513 to 25815982 7469 + protein coding gene steroidogenic acute regulatory protein
Tssr76717 8 25808652 to 25808661 9 + TSS region transcription start site region 76717
Tssr76718 8 25809862 to 25809874 12 + TSS region transcription start site region 76718
Tssr80733 8 25812970 to 25813003 33 - TSS region transcription start site region 80733
Tssr76719 8 25812974 to 25812986 12 + TSS region transcription start site region 76719
Tssr76720 8 25813036 to 25813043 7 + TSS region transcription start site region 76720
Tssr76721 8 25813052 to 25813061 9 + TSS region transcription start site region 76721
Tssr76722 8 25813088 to 25813099 11 + TSS region transcription start site region 76722
Tssr80734 8 25813163 to 25813180 17 - TSS region transcription start site region 80734
Tssr76723 8 25813366 to 25813379 13 + TSS region transcription start site region 76723
Tssr76724 8 25813613 to 25813633 20 + TSS region transcription start site region 76724
Tssr2527 8 25813761 to 25813772 11 + TSS region transcription start site region 2527
Tssr76725 8 25814524 to 25814545 21 + TSS region transcription start site region 76725
Tssr76726 8 25815207 to 25815214 7 + TSS region transcription start site region 76726
Ash2l 8 25816000 to 25847694 31694 - protein coding gene ASH2 like histone lysine methyltransferase complex subunit
Cpgi20193 8 25840147 to 25841648 1501 CpG island CpG island 20193
Tssr80735 8 25840440 to 25840461 21 - TSS region transcription start site region 80735
Tssr80736 8 25840465 to 25840519 54 - TSS region transcription start site region 80736
Tssr80737 8 25840755 to 25840794 39 - TSS region transcription start site region 80737
Tssr80738 8 25847621 to 25847676 55 - TSS region transcription start site region 80738
Tssr80739 8 25847681 to 25847698 17 - TSS region transcription start site region 80739
Tssr80740 8 25847705 to 25847716 11 - TSS region transcription start site region 80740
Tssr76727 8 25849610 to 25849617 7 + TSS region transcription start site region 76727
Tssr76728 8 25849618 to 25849633 15 + TSS region transcription start site region 76728
Kcnu1 8 25849623 to 25937939 88316 + protein coding gene potassium channel, subfamily U, member 1
Tssr76729 8 25849638 to 25849650 12 + TSS region transcription start site region 76729
Tssr76730 8 25849660 to 25849665 5 + TSS region transcription start site region 76730
Tssr76731 8 25849672 to 25849681 9 + TSS region transcription start site region 76731
Cpgi20194 8 25886560 to 25886784 224 CpG island CpG island 20194
Cpgi20195 8 25910130 to 25910537 407 CpG island CpG island 20195
Tssr76732 8 25910215 to 25910219 4 + TSS region transcription start site region 76732
Tssr76733 8 25911670 to 25911688 18 + TSS region transcription start site region 76733
Hgsnat 8 25944459 to 25976744 32285 - protein coding gene heparan-alpha-glucosaminide N-acetyltransferase
Cpgi20196 8 25976157 to 25976959 802 CpG island CpG island 20196
Tssr80741 8 25976645 to 25976652 7 - TSS region transcription start site region 80741
Tssr80742 8 25976666 to 25976716 50 - TSS region transcription start site region 80742
Tssr2528 8 25976721 to 25976726 5 - TSS region transcription start site region 2528
Tssr80743 8 25976730 to 25976735 5 - TSS region transcription start site region 80743
Tssr80744 8 25976736 to 25976741 5 - TSS region transcription start site region 80744
Tssr80745 8 25976747 to 25976758 11 - TSS region transcription start site region 80745
Pomk 8 25980604 to 25994121 13517 - protein coding gene protein-O-mannose kinase
Cpgi20197 8 25986100 to 25986526 426 CpG island CpG island 20197
Tssr80746 8 25990092 to 25990115 23 - TSS region transcription start site region 80746
Gm31402 8 25992654 to 25998229 5575 + lncRNA gene predicted gene, 31402
Cpgi20198 8 25993783 to 25994392 609 CpG island CpG island 20198
Tssr80747 8 25994103 to 25994144 41 - TSS region transcription start site region 80747
Fnta 8 25998722 to 26015601 16879 - protein coding gene farnesyltransferase, CAAX box, alpha
D8Rck2 8 25999008 to 25999227 219 DNA segment DNA segment, Chr 8, Rockefeller University 2
Tssr80748 8 26001970 to 26001987 17 - TSS region transcription start site region 80748
Cpgi20199 8 26014836 to 26015769 933 CpG island CpG island 20199
Tssr80749 8 26015577 to 26015626 49 - TSS region transcription start site region 80749
Hook3 8 26021421 to 26119224 97803 - protein coding gene hook microtubule tethering protein 3
Gm45411 8 26023410 to 26032253 8843 + antisense lncRNA gene predicted gene 45411
Tssr80750 8 26026700 to 26026705 5 - TSS region transcription start site region 80750
5730564C23Rik 8 26051606 to 26052545 939 unclassified gene RIKEN cDNA 5730564C23 gene
Tssr80751 8 26058061 to 26058100 39 - TSS region transcription start site region 80751
Tssr80752 8 26059375 to 26059381 6 - TSS region transcription start site region 80752
Gm45413 8 26062515 to 26066052 3537 - unclassified gene predicted gene 45413
Tssr76734 8 26082603 to 26082625 22 + TSS region transcription start site region 76734
1700047A11Rik 8 26082609 to 26096520 13911 + antisense lncRNA gene RIKEN cDNA 1700047A11 gene
Tssr80753 8 26089873 to 26089883 10 - TSS region transcription start site region 80753
Gm18364 8 26103616 to 26104228 612 + pseudogene predicted gene, 18364
Cpgi20200 8 26118475 to 26120031 1556 CpG island CpG island 20200
Tssr80754 8 26119125 to 26119233 108 - TSS region transcription start site region 80754
Tssr80755 8 26119292 to 26119303 11 - TSS region transcription start site region 80755
Tssr76735 8 26119361 to 26119368 7 + TSS region transcription start site region 76735
Rnf170 8 26119365 to 26143874 24509 + protein coding gene ring finger protein 170
Tssr76736 8 26119461 to 26119539 78 + TSS region transcription start site region 76736
Gm45692 8 26119534 to 26160819 41285 + protein coding gene predicted gene 45692
Tssr76737 8 26119611 to 26119682 71 + TSS region transcription start site region 76737
Gm45251 8 26131178 to 26132642 1464 - unclassified gene predicted gene 45251
Gm45250 8 26151888 to 26155479 3591 - lincRNA gene predicted gene 45250
Cpgi20201 8 26157832 to 26159191 1359 CpG island CpG island 20201
Tssr80756 8 26158024 to 26158058 34 - TSS region transcription start site region 80756
Thap1 8 26158169 to 26164151 5982 + protein coding gene THAP domain containing, apoptosis associated protein 1
Tssr76738 8 26158186 to 26158252 66 + TSS region transcription start site region 76738
Tssr80757 8 26158545 to 26158580 35 - TSS region transcription start site region 80757
Cpgi20202 8 26184874 to 26185078 204 CpG island CpG island 20202
Gm44299 8 26219461 to 26219549 88 + miRNA gene predicted gene, 44299
Gm22227 8 26240150 to 26240408 258 - unclassified non-coding RNA gene predicted gene, 22227
Gm45305 8 26242724 to 26244051 1327 + lincRNA gene predicted gene 45305
Cpgi20203 8 26258561 to 26258850 289 CpG island CpG island 20203
Tssr76739 8 26266857 to 26266894 37 + TSS region transcription start site region 76739
Gm31727 8 26266977 to 26273555 6578 + lincRNA gene predicted gene, 31727
Gm31784 8 26298352 to 26312334 13982 - lincRNA gene predicted gene, 31784
Gm45307 8 26298634 to 26354163 55529 + lincRNA gene predicted gene 45307
Gm31843 8 26381686 to 26389138 7452 + lncRNA gene predicted gene, 31843
Gm39148 8 26386110 to 26389066 2956 - lncRNA gene predicted gene, 39148
Gm31898 8 26428281 to 26435713 7432 - lincRNA gene predicted gene, 31898
Gm45580 8 26438829 to 26440492 1663 + lincRNA gene predicted gene 45580
D8Mit290 8 26448465 to 26448582 117 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 290
Gm31983 8 26452793 to 26468559 15766 - lincRNA gene predicted gene, 31983
Cpgi20204 8 26509929 to 26510247 318 CpG island CpG island 20204
Cpgi20205 8 26533997 to 26534287 290 CpG island CpG island 20205
D8Mit356 8 26552986 to 26553235 249 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 356
Gm39149 8 26560461 to 26579802 19341 - lincRNA gene predicted gene, 39149
Gm32050 8 26626744 to 26627480 736 - lincRNA gene predicted gene, 32050
Gm45584 8 26637675 to 26639952 2277 + lincRNA gene predicted gene 45584
Gm32098 8 26665893 to 26668306 2413 - lincRNA gene predicted gene, 32098
Tssr76740 8 26698888 to 26698925 37 + TSS region transcription start site region 76740
Tssr2529 8 26717318 to 26717321 3 + TSS region transcription start site region 2529
D8Mit223 8 26719787 to 26719909 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 223
Tssr76741 8 26724486 to 26724491 5 + TSS region transcription start site region 76741
Gm45646 8 26745929 to 26760561 14632 - lincRNA gene predicted gene 45646
Gm46067 8 26768747 to 26770539 1792 - lncRNA gene predicted gene, 46067
Gm45647 8 26780315 to 26780509 194 + pseudogene predicted gene 45647
Cpgi20206 8 26780580 to 26780928 348 CpG island CpG island 20206
2310008N11Rik 8 26814595 to 26824423 9828 - lincRNA gene RIKEN cDNA 2310008N11 gene
Gm29728 8 26823247 to 26823772 525 + pseudogene predicted gene, 29728
Tssr80758 8 26824418 to 26824430 12 - TSS region transcription start site region 80758
Tssr76742 8 26847053 to 26847058 5 + TSS region transcription start site region 76742
Gm39150 8 26960786 to 26977077 16291 - lncRNA gene predicted gene, 39150
Gm45572 8 26966434 to 26967474 1040 + lincRNA gene predicted gene 45572
Cpgi20207 8 26966489 to 26966716 227 CpG island CpG island 20207
Tssr76743 8 26975937 to 26975964 27 + TSS region transcription start site region 76743
Tssr76744 8 26976019 to 26976022 3 + TSS region transcription start site region 76744
Cpgi20208 8 26976269 to 26980076 3807 CpG island CpG island 20208
Tssr80759 8 26976948 to 26976986 38 - TSS region transcription start site region 80759
Tssr76745 8 26977106 to 26977127 21 + TSS region transcription start site region 76745
Tssr76746 8 26977137 to 26977162 25 + TSS region transcription start site region 76746
Tssr76747 8 26977302 to 26977344 42 + TSS region transcription start site region 76747
Zfp703 8 26977336 to 26981462 4126 + protein coding gene zinc finger protein 703
Tssr76748 8 26977370 to 26977398 28 + TSS region transcription start site region 76748
Gm45371 8 26977391 to 26980001 2610 - antisense lncRNA gene predicted gene 45371
Tssr76749 8 26977458 to 26977490 32 + TSS region transcription start site region 76749
Tssr76750 8 26978150 to 26978190 40 + TSS region transcription start site region 76750
Tssr76751 8 26978611 to 26978618 7 + TSS region transcription start site region 76751
Tssr76752 8 26978769 to 26978795 26 + TSS region transcription start site region 76752
Tssr76753 8 26979224 to 26979250 26 + TSS region transcription start site region 76753
Tssr76754 8 26979942 to 26979945 3 + TSS region transcription start site region 76754
Tssr76755 8 26980112 to 26980127 15 + TSS region transcription start site region 76755
Tssr76756 8 26980470 to 26980481 11 + TSS region transcription start site region 76756
Gm45370 8 26996250 to 26998954 2704 + lincRNA gene predicted gene 45370
Gm32389 8 27008467 to 27012903 4436 + lincRNA gene predicted gene, 32389
Gm19164 8 27019466 to 27019990 524 - pseudogene predicted gene, 19164
Tssr76757 8 27022073 to 27022079 6 + TSS region transcription start site region 76757
Erlin2 8 27023266 to 27039437 16171 + protein coding gene ER lipid raft associated 2
Tssr76758 8 27023364 to 27023380 16 + TSS region transcription start site region 76758
Cpgi20209 8 27023367 to 27024277 910 CpG island CpG island 20209
Tssr76759 8 27023793 to 27023810 17 + TSS region transcription start site region 76759
Tssr76760 8 27023812 to 27023937 125 + TSS region transcription start site region 76760
Tssr2530 8 27031297 to 27031337 40 + TSS region transcription start site region 2530
Tssr76761 8 27038154 to 27038167 13 + TSS region transcription start site region 76761
Cpgi20210 8 27042367 to 27043198 831 CpG island CpG island 20210
Proscos 8 27042377 to 27043042 665 - antisense lncRNA gene proline synthetase co-transcribed, opposite strand
Plpbp 8 27042555 to 27056132 13577 + protein coding gene pyridoxal phosphate binding protein
Tssr76762 8 27042558 to 27042589 31 + TSS region transcription start site region 76762
Tssr76763 8 27042592 to 27042630 38 + TSS region transcription start site region 76763
Tssr80760 8 27042682 to 27042704 22 - TSS region transcription start site region 80760
Tssr80761 8 27042726 to 27042741 15 - TSS region transcription start site region 80761
Tssr80762 8 27042981 to 27043004 23 - TSS region transcription start site region 80762
Tssr80763 8 27043009 to 27043032 23 - TSS region transcription start site region 80763
Tssr80764 8 27043034 to 27043047 13 - TSS region transcription start site region 80764
Tssr80765 8 27043050 to 27043061 11 - TSS region transcription start site region 80765