Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25609524-26019545

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nsd3 8 25601601 to 25719667 118066 + protein coding gene nuclear receptor binding SET domain protein 3
Gm23184 8 25610428 to 25610558 130 - snoRNA gene predicted gene, 23184
Gm24992 8 25631950 to 25632079 129 + snoRNA gene predicted gene, 24992
Tssr76697 8 25640705 to 25640728 23 + TSS region transcription start site region 76697
Tssr76698 8 25640733 to 25640841 108 + TSS region transcription start site region 76698
Tssr76699 8 25640901 to 25640948 47 + TSS region transcription start site region 76699
Tssr76700 8 25643939 to 25643947 8 + TSS region transcription start site region 76700
Tssr76701 8 25649397 to 25649415 18 + TSS region transcription start site region 76701
Tssr80724 8 25661474 to 25661480 6 - TSS region transcription start site region 80724
Tssr76702 8 25673979 to 25673991 12 + TSS region transcription start site region 76702
Tssr76703 8 25677002 to 25677007 5 + TSS region transcription start site region 76703
Gm23094 8 25678950 to 25679271 321 + unclassified non-coding RNA gene predicted gene, 23094
Gm45343 8 25687369 to 25688196 827 + unclassified gene predicted gene 45343
Tssr76704 8 25687684 to 25687705 21 + TSS region transcription start site region 76704
Gm45342 8 25692146 to 25693508 1362 + unclassified gene predicted gene 45342
Tssr76705 8 25716572 to 25716584 12 + TSS region transcription start site region 76705
Cpgi20190 8 25719899 to 25720697 798 CpG island CpG island 20190
Plpp5 8 25720037 to 25724887 4850 + protein coding gene phospholipid phosphatase 5
Tssr76706 8 25720042 to 25720053 11 + TSS region transcription start site region 76706
Tssr76707 8 25720054 to 25720099 45 + TSS region transcription start site region 76707
Tssr76708 8 25720135 to 25720148 13 + TSS region transcription start site region 76708
Tssr76709 8 25720259 to 25720304 45 + TSS region transcription start site region 76709
Tssr76710 8 25720459 to 25720474 15 + TSS region transcription start site region 76710
Ddhd2 8 25725324 to 25754407 29083 - protein coding gene DDHD domain containing 2
D8Ertd317e 8 25729970 to 25730212 242 DNA segment DNA segment, Chr 8, ERATO Doi 317, expressed
6430710M23Rik 8 25744390 to 25745580 1190 - unclassified gene RIKEN cDNA 6430710M23 gene
Cpgi20191 8 25753744 to 25754898 1154 CpG island CpG island 20191
Tssr80725 8 25754214 to 25754250 36 - TSS region transcription start site region 80725
Tssr2526 8 25754252 to 25754275 23 - TSS region transcription start site region 2526
Tssr80726 8 25754352 to 25754424 72 - TSS region transcription start site region 80726
Tssr76711 8 25754462 to 25754485 23 + TSS region transcription start site region 76711
Gm17484 8 25754480 to 25769704 15224 + lincRNA gene predicted gene, 17484
Tssr76712 8 25754492 to 25754514 22 + TSS region transcription start site region 76712
Bag4 8 25764538 to 25785209 20671 - protein coding gene BCL2-associated athanogene 4
Tssr80727 8 25769583 to 25769593 10 - TSS region transcription start site region 80727
Gm19075 8 25775836 to 25776513 677 - pseudogene predicted gene, 19075
Cpgi20192 8 25784461 to 25786114 1653 CpG island CpG island 20192
Tssr80728 8 25785154 to 25785215 61 - TSS region transcription start site region 80728
Tssr80729 8 25785223 to 25785230 7 - TSS region transcription start site region 80729
Tssr76713 8 25785289 to 25785319 30 + TSS region transcription start site region 76713
Lsm1 8 25785536 to 25803975 18439 + protein coding gene LSM1 homolog, mRNA degradation associated
Tssr76714 8 25785538 to 25785587 49 + TSS region transcription start site region 76714
Tssr76715 8 25785597 to 25785603 6 + TSS region transcription start site region 76715
Gm46037 8 25788823 to 25789353 530 - pseudogene predicted gene, 46037
Tssr80730 8 25789315 to 25789324 9 - TSS region transcription start site region 80730
Tssr80731 8 25797072 to 25797077 5 - TSS region transcription start site region 80731
Tssr80732 8 25808248 to 25808250 2 - TSS region transcription start site region 80732
Tssr76716 8 25808494 to 25808513 19 + TSS region transcription start site region 76716
Star 8 25808513 to 25815982 7469 + protein coding gene steroidogenic acute regulatory protein
Tssr76717 8 25808652 to 25808661 9 + TSS region transcription start site region 76717
Tssr76718 8 25809862 to 25809874 12 + TSS region transcription start site region 76718
Tssr80733 8 25812970 to 25813003 33 - TSS region transcription start site region 80733
Tssr76719 8 25812974 to 25812986 12 + TSS region transcription start site region 76719
Tssr76720 8 25813036 to 25813043 7 + TSS region transcription start site region 76720
Tssr76721 8 25813052 to 25813061 9 + TSS region transcription start site region 76721
Tssr76722 8 25813088 to 25813099 11 + TSS region transcription start site region 76722
Tssr80734 8 25813163 to 25813180 17 - TSS region transcription start site region 80734
Tssr76723 8 25813366 to 25813379 13 + TSS region transcription start site region 76723
Tssr76724 8 25813613 to 25813633 20 + TSS region transcription start site region 76724
Tssr2527 8 25813761 to 25813772 11 + TSS region transcription start site region 2527
Tssr76725 8 25814524 to 25814545 21 + TSS region transcription start site region 76725
Tssr76726 8 25815207 to 25815214 7 + TSS region transcription start site region 76726
Ash2l 8 25816000 to 25847694 31694 - protein coding gene ASH2 like histone lysine methyltransferase complex subunit
Cpgi20193 8 25840147 to 25841648 1501 CpG island CpG island 20193
Tssr80735 8 25840440 to 25840461 21 - TSS region transcription start site region 80735
Tssr80736 8 25840465 to 25840519 54 - TSS region transcription start site region 80736
Tssr80737 8 25840755 to 25840794 39 - TSS region transcription start site region 80737
Tssr80738 8 25847621 to 25847676 55 - TSS region transcription start site region 80738
Tssr80739 8 25847681 to 25847698 17 - TSS region transcription start site region 80739
Tssr80740 8 25847705 to 25847716 11 - TSS region transcription start site region 80740
Tssr76727 8 25849610 to 25849617 7 + TSS region transcription start site region 76727
Tssr76728 8 25849618 to 25849633 15 + TSS region transcription start site region 76728
Kcnu1 8 25849623 to 25937939 88316 + protein coding gene potassium channel, subfamily U, member 1
Tssr76729 8 25849638 to 25849650 12 + TSS region transcription start site region 76729
Tssr76730 8 25849660 to 25849665 5 + TSS region transcription start site region 76730
Tssr76731 8 25849672 to 25849681 9 + TSS region transcription start site region 76731
Cpgi20194 8 25886560 to 25886784 224 CpG island CpG island 20194
Cpgi20195 8 25910130 to 25910537 407 CpG island CpG island 20195
Tssr76732 8 25910215 to 25910219 4 + TSS region transcription start site region 76732
Tssr76733 8 25911670 to 25911688 18 + TSS region transcription start site region 76733
Hgsnat 8 25944459 to 25976744 32285 - protein coding gene heparan-alpha-glucosaminide N-acetyltransferase
Cpgi20196 8 25976157 to 25976959 802 CpG island CpG island 20196
Tssr80741 8 25976645 to 25976652 7 - TSS region transcription start site region 80741
Tssr80742 8 25976666 to 25976716 50 - TSS region transcription start site region 80742
Tssr2528 8 25976721 to 25976726 5 - TSS region transcription start site region 2528
Tssr80743 8 25976730 to 25976735 5 - TSS region transcription start site region 80743
Tssr80744 8 25976736 to 25976741 5 - TSS region transcription start site region 80744
Tssr80745 8 25976747 to 25976758 11 - TSS region transcription start site region 80745
Pomk 8 25980604 to 25994121 13517 - protein coding gene protein-O-mannose kinase
Cpgi20197 8 25986100 to 25986526 426 CpG island CpG island 20197
Tssr80746 8 25990092 to 25990115 23 - TSS region transcription start site region 80746
Gm31402 8 25992654 to 25998229 5575 + lncRNA gene predicted gene, 31402
Cpgi20198 8 25993783 to 25994392 609 CpG island CpG island 20198
Tssr80747 8 25994103 to 25994144 41 - TSS region transcription start site region 80747
Fnta 8 25998722 to 26015601 16879 - protein coding gene farnesyltransferase, CAAX box, alpha
D8Rck2 8 25999008 to 25999227 219 DNA segment DNA segment, Chr 8, Rockefeller University 2
Tssr80748 8 26001970 to 26001987 17 - TSS region transcription start site region 80748
Cpgi20199 8 26014836 to 26015769 933 CpG island CpG island 20199
Tssr80749 8 26015577 to 26015626 49 - TSS region transcription start site region 80749