Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25582369-25793196

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Letm2 8 25578490 to 25597582 19092 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 2
Tssr80715 8 25589450 to 25589460 10 - TSS region transcription start site region 80715
Tssr80716 8 25589519 to 25589555 36 - TSS region transcription start site region 80716
Gm45570 8 25594454 to 25595106 652 - sense intronic lncRNA gene predicted gene 45570
Cpgi20188 8 25596931 to 25597814 883 CpG island CpG island 20188
Tssr80717 8 25597000 to 25597038 38 - TSS region transcription start site region 80717
D830025C05Rik 8 25597012 to 25599207 2195 + antisense lncRNA gene RIKEN cDNA D830025C05 gene
Tssr76686 8 25597096 to 25597127 31 + TSS region transcription start site region 76686
Tssr80718 8 25597459 to 25597517 58 - TSS region transcription start site region 80718
Tssr80719 8 25597541 to 25597598 57 - TSS region transcription start site region 80719
Tssr80720 8 25597611 to 25597614 3 - TSS region transcription start site region 80720
Tssr76687 8 25597694 to 25597705 11 + TSS region transcription start site region 76687
Cpgi20189 8 25601266 to 25602939 1673 CpG island CpG island 20189
Tssr76688 8 25601466 to 25601477 11 + TSS region transcription start site region 76688
Tssr76689 8 25601487 to 25601497 10 + TSS region transcription start site region 76689
Tssr76690 8 25601505 to 25601516 11 + TSS region transcription start site region 76690
Tssr76691 8 25601562 to 25601574 12 + TSS region transcription start site region 76691
Tssr76692 8 25601591 to 25601607 16 + TSS region transcription start site region 76692
Nsd3 8 25601601 to 25719667 118066 + protein coding gene nuclear receptor binding SET domain protein 3
Tssr76693 8 25601617 to 25601670 53 + TSS region transcription start site region 76693
Tssr76694 8 25601694 to 25601703 9 + TSS region transcription start site region 76694
Tssr80721 8 25601820 to 25601849 29 - TSS region transcription start site region 80721
Tssr80722 8 25602050 to 25602060 10 - TSS region transcription start site region 80722
Tssr80723 8 25602070 to 25602090 20 - TSS region transcription start site region 80723
Tssr76695 8 25602236 to 25602315 79 + TSS region transcription start site region 76695
Tssr76696 8 25602463 to 25602472 9 + TSS region transcription start site region 76696
Gm23184 8 25610428 to 25610558 130 - snoRNA gene predicted gene, 23184
Gm24992 8 25631950 to 25632079 129 + snoRNA gene predicted gene, 24992
Tssr76697 8 25640705 to 25640728 23 + TSS region transcription start site region 76697
Tssr76698 8 25640733 to 25640841 108 + TSS region transcription start site region 76698
Tssr76699 8 25640901 to 25640948 47 + TSS region transcription start site region 76699
Tssr76700 8 25643939 to 25643947 8 + TSS region transcription start site region 76700
Tssr76701 8 25649397 to 25649415 18 + TSS region transcription start site region 76701
Tssr80724 8 25661474 to 25661480 6 - TSS region transcription start site region 80724
Tssr76702 8 25673979 to 25673991 12 + TSS region transcription start site region 76702
Tssr76703 8 25677002 to 25677007 5 + TSS region transcription start site region 76703
Gm23094 8 25678950 to 25679271 321 + unclassified non-coding RNA gene predicted gene, 23094
Gm45343 8 25687369 to 25688196 827 + unclassified gene predicted gene 45343
Tssr76704 8 25687684 to 25687705 21 + TSS region transcription start site region 76704
Gm45342 8 25692146 to 25693508 1362 + unclassified gene predicted gene 45342
Tssr76705 8 25716572 to 25716584 12 + TSS region transcription start site region 76705
Cpgi20190 8 25719899 to 25720697 798 CpG island CpG island 20190
Plpp5 8 25720037 to 25724887 4850 + protein coding gene phospholipid phosphatase 5
Tssr76706 8 25720042 to 25720053 11 + TSS region transcription start site region 76706
Tssr76707 8 25720054 to 25720099 45 + TSS region transcription start site region 76707
Tssr76708 8 25720135 to 25720148 13 + TSS region transcription start site region 76708
Tssr76709 8 25720259 to 25720304 45 + TSS region transcription start site region 76709
Tssr76710 8 25720459 to 25720474 15 + TSS region transcription start site region 76710
Ddhd2 8 25725324 to 25754407 29083 - protein coding gene DDHD domain containing 2
D8Ertd317e 8 25729970 to 25730212 242 DNA segment DNA segment, Chr 8, ERATO Doi 317, expressed
6430710M23Rik 8 25744390 to 25745580 1190 - unclassified gene RIKEN cDNA 6430710M23 gene
Cpgi20191 8 25753744 to 25754898 1154 CpG island CpG island 20191
Tssr80725 8 25754214 to 25754250 36 - TSS region transcription start site region 80725
Tssr2526 8 25754252 to 25754275 23 - TSS region transcription start site region 2526
Tssr80726 8 25754352 to 25754424 72 - TSS region transcription start site region 80726
Tssr76711 8 25754462 to 25754485 23 + TSS region transcription start site region 76711
Gm17484 8 25754480 to 25769704 15224 + lincRNA gene predicted gene, 17484
Tssr76712 8 25754492 to 25754514 22 + TSS region transcription start site region 76712
Bag4 8 25764538 to 25785209 20671 - protein coding gene BCL2-associated athanogene 4
Tssr80727 8 25769583 to 25769593 10 - TSS region transcription start site region 80727
Gm19075 8 25775836 to 25776513 677 - pseudogene predicted gene, 19075
Cpgi20192 8 25784461 to 25786114 1653 CpG island CpG island 20192
Tssr80728 8 25785154 to 25785215 61 - TSS region transcription start site region 80728
Tssr80729 8 25785223 to 25785230 7 - TSS region transcription start site region 80729
Tssr76713 8 25785289 to 25785319 30 + TSS region transcription start site region 76713
Lsm1 8 25785536 to 25803975 18439 + protein coding gene LSM1 homolog, mRNA degradation associated
Tssr76714 8 25785538 to 25785587 49 + TSS region transcription start site region 76714
Tssr76715 8 25785597 to 25785603 6 + TSS region transcription start site region 76715
Gm46037 8 25788823 to 25789353 530 - pseudogene predicted gene, 46037
Tssr80730 8 25789315 to 25789324 9 - TSS region transcription start site region 80730