Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25546178-26717642

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgfr1 8 25513654 to 25575718 62064 + protein coding gene fibroblast growth factor receptor 1
Tssr80711 8 25548062 to 25548072 10 - TSS region transcription start site region 80711
Tssr80712 8 25548076 to 25548088 12 - TSS region transcription start site region 80712
Gm16159 8 25548673 to 25556083 7410 - antisense lncRNA gene predicted gene 16159
Tssr76683 8 25555059 to 25555070 11 + TSS region transcription start site region 76683
Cpgi20187 8 25555533 to 25556044 511 CpG island CpG island 20187
Tssr80713 8 25556134 to 25556152 18 - TSS region transcription start site region 80713
Tssr80714 8 25556161 to 25556184 23 - TSS region transcription start site region 80714
Tssr76684 8 25564413 to 25564437 24 + TSS region transcription start site region 76684
Tssr76685 8 25574062 to 25574074 12 + TSS region transcription start site region 76685
Letm2 8 25578490 to 25597582 19092 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 2
Tssr80715 8 25589450 to 25589460 10 - TSS region transcription start site region 80715
Tssr80716 8 25589519 to 25589555 36 - TSS region transcription start site region 80716
Gm45570 8 25594454 to 25595106 652 - sense intronic lncRNA gene predicted gene 45570
Cpgi20188 8 25596931 to 25597814 883 CpG island CpG island 20188
Tssr80717 8 25597000 to 25597038 38 - TSS region transcription start site region 80717
D830025C05Rik 8 25597012 to 25599207 2195 + antisense lncRNA gene RIKEN cDNA D830025C05 gene
Tssr76686 8 25597096 to 25597127 31 + TSS region transcription start site region 76686
Tssr80718 8 25597459 to 25597517 58 - TSS region transcription start site region 80718
Tssr80719 8 25597541 to 25597598 57 - TSS region transcription start site region 80719
Tssr80720 8 25597611 to 25597614 3 - TSS region transcription start site region 80720
Tssr76687 8 25597694 to 25597705 11 + TSS region transcription start site region 76687
Cpgi20189 8 25601266 to 25602939 1673 CpG island CpG island 20189
Tssr76688 8 25601466 to 25601477 11 + TSS region transcription start site region 76688
Tssr76689 8 25601487 to 25601497 10 + TSS region transcription start site region 76689
Tssr76690 8 25601505 to 25601516 11 + TSS region transcription start site region 76690
Tssr76691 8 25601562 to 25601574 12 + TSS region transcription start site region 76691
Tssr76692 8 25601591 to 25601607 16 + TSS region transcription start site region 76692
Nsd3 8 25601601 to 25719667 118066 + protein coding gene nuclear receptor binding SET domain protein 3
Tssr76693 8 25601617 to 25601670 53 + TSS region transcription start site region 76693
Tssr76694 8 25601694 to 25601703 9 + TSS region transcription start site region 76694
Tssr80721 8 25601820 to 25601849 29 - TSS region transcription start site region 80721
Tssr80722 8 25602050 to 25602060 10 - TSS region transcription start site region 80722
Tssr80723 8 25602070 to 25602090 20 - TSS region transcription start site region 80723
Tssr76695 8 25602236 to 25602315 79 + TSS region transcription start site region 76695
Tssr76696 8 25602463 to 25602472 9 + TSS region transcription start site region 76696
Gm23184 8 25610428 to 25610558 130 - snoRNA gene predicted gene, 23184
Gm24992 8 25631950 to 25632079 129 + snoRNA gene predicted gene, 24992
Tssr76697 8 25640705 to 25640728 23 + TSS region transcription start site region 76697
Tssr76698 8 25640733 to 25640841 108 + TSS region transcription start site region 76698
Tssr76699 8 25640901 to 25640948 47 + TSS region transcription start site region 76699
Tssr76700 8 25643939 to 25643947 8 + TSS region transcription start site region 76700
Tssr76701 8 25649397 to 25649415 18 + TSS region transcription start site region 76701
Tssr80724 8 25661474 to 25661480 6 - TSS region transcription start site region 80724
Tssr76702 8 25673979 to 25673991 12 + TSS region transcription start site region 76702
Tssr76703 8 25677002 to 25677007 5 + TSS region transcription start site region 76703
Gm23094 8 25678950 to 25679271 321 + unclassified non-coding RNA gene predicted gene, 23094
Gm45343 8 25687369 to 25688196 827 + unclassified gene predicted gene 45343
Tssr76704 8 25687684 to 25687705 21 + TSS region transcription start site region 76704
Gm45342 8 25692146 to 25693508 1362 + unclassified gene predicted gene 45342
Tssr76705 8 25716572 to 25716584 12 + TSS region transcription start site region 76705
Cpgi20190 8 25719899 to 25720697 798 CpG island CpG island 20190
Plpp5 8 25720037 to 25724887 4850 + protein coding gene phospholipid phosphatase 5
Tssr76706 8 25720042 to 25720053 11 + TSS region transcription start site region 76706
Tssr76707 8 25720054 to 25720099 45 + TSS region transcription start site region 76707
Tssr76708 8 25720135 to 25720148 13 + TSS region transcription start site region 76708
Tssr76709 8 25720259 to 25720304 45 + TSS region transcription start site region 76709
Tssr76710 8 25720459 to 25720474 15 + TSS region transcription start site region 76710
Ddhd2 8 25725324 to 25754407 29083 - protein coding gene DDHD domain containing 2
D8Ertd317e 8 25729970 to 25730212 242 DNA segment DNA segment, Chr 8, ERATO Doi 317, expressed
6430710M23Rik 8 25744390 to 25745580 1190 - unclassified gene RIKEN cDNA 6430710M23 gene
Cpgi20191 8 25753744 to 25754898 1154 CpG island CpG island 20191
Tssr80725 8 25754214 to 25754250 36 - TSS region transcription start site region 80725
Tssr2526 8 25754252 to 25754275 23 - TSS region transcription start site region 2526
Tssr80726 8 25754352 to 25754424 72 - TSS region transcription start site region 80726
Tssr76711 8 25754462 to 25754485 23 + TSS region transcription start site region 76711
Gm17484 8 25754480 to 25769704 15224 + lincRNA gene predicted gene, 17484
Tssr76712 8 25754492 to 25754514 22 + TSS region transcription start site region 76712
Bag4 8 25764538 to 25785209 20671 - protein coding gene BCL2-associated athanogene 4
Tssr80727 8 25769583 to 25769593 10 - TSS region transcription start site region 80727
Gm19075 8 25775836 to 25776513 677 - pseudogene predicted gene, 19075
Cpgi20192 8 25784461 to 25786114 1653 CpG island CpG island 20192
Tssr80728 8 25785154 to 25785215 61 - TSS region transcription start site region 80728
Tssr80729 8 25785223 to 25785230 7 - TSS region transcription start site region 80729
Tssr76713 8 25785289 to 25785319 30 + TSS region transcription start site region 76713
Lsm1 8 25785536 to 25803975 18439 + protein coding gene LSM1 homolog, mRNA degradation associated
Tssr76714 8 25785538 to 25785587 49 + TSS region transcription start site region 76714
Tssr76715 8 25785597 to 25785603 6 + TSS region transcription start site region 76715
Gm46037 8 25788823 to 25789353 530 - pseudogene predicted gene, 46037
Tssr80730 8 25789315 to 25789324 9 - TSS region transcription start site region 80730
Tssr80731 8 25797072 to 25797077 5 - TSS region transcription start site region 80731
Tssr80732 8 25808248 to 25808250 2 - TSS region transcription start site region 80732
Tssr76716 8 25808494 to 25808513 19 + TSS region transcription start site region 76716
Star 8 25808513 to 25815982 7469 + protein coding gene steroidogenic acute regulatory protein
Tssr76717 8 25808652 to 25808661 9 + TSS region transcription start site region 76717
Tssr76718 8 25809862 to 25809874 12 + TSS region transcription start site region 76718
Tssr80733 8 25812970 to 25813003 33 - TSS region transcription start site region 80733
Tssr76719 8 25812974 to 25812986 12 + TSS region transcription start site region 76719
Tssr76720 8 25813036 to 25813043 7 + TSS region transcription start site region 76720
Tssr76721 8 25813052 to 25813061 9 + TSS region transcription start site region 76721
Tssr76722 8 25813088 to 25813099 11 + TSS region transcription start site region 76722
Tssr80734 8 25813163 to 25813180 17 - TSS region transcription start site region 80734
Tssr76723 8 25813366 to 25813379 13 + TSS region transcription start site region 76723
Tssr76724 8 25813613 to 25813633 20 + TSS region transcription start site region 76724
Tssr2527 8 25813761 to 25813772 11 + TSS region transcription start site region 2527
Tssr76725 8 25814524 to 25814545 21 + TSS region transcription start site region 76725
Tssr76726 8 25815207 to 25815214 7 + TSS region transcription start site region 76726
Ash2l 8 25816000 to 25847694 31694 - protein coding gene ASH2 like histone lysine methyltransferase complex subunit
Cpgi20193 8 25840147 to 25841648 1501 CpG island CpG island 20193
Tssr80735 8 25840440 to 25840461 21 - TSS region transcription start site region 80735
Tssr80736 8 25840465 to 25840519 54 - TSS region transcription start site region 80736
Tssr80737 8 25840755 to 25840794 39 - TSS region transcription start site region 80737
Tssr80738 8 25847621 to 25847676 55 - TSS region transcription start site region 80738
Tssr80739 8 25847681 to 25847698 17 - TSS region transcription start site region 80739
Tssr80740 8 25847705 to 25847716 11 - TSS region transcription start site region 80740
Tssr76727 8 25849610 to 25849617 7 + TSS region transcription start site region 76727
Tssr76728 8 25849618 to 25849633 15 + TSS region transcription start site region 76728
Kcnu1 8 25849623 to 25937939 88316 + protein coding gene potassium channel, subfamily U, member 1
Tssr76729 8 25849638 to 25849650 12 + TSS region transcription start site region 76729
Tssr76730 8 25849660 to 25849665 5 + TSS region transcription start site region 76730
Tssr76731 8 25849672 to 25849681 9 + TSS region transcription start site region 76731
Cpgi20194 8 25886560 to 25886784 224 CpG island CpG island 20194
Cpgi20195 8 25910130 to 25910537 407 CpG island CpG island 20195
Tssr76732 8 25910215 to 25910219 4 + TSS region transcription start site region 76732
Tssr76733 8 25911670 to 25911688 18 + TSS region transcription start site region 76733
Hgsnat 8 25944459 to 25976744 32285 - protein coding gene heparan-alpha-glucosaminide N-acetyltransferase
Cpgi20196 8 25976157 to 25976959 802 CpG island CpG island 20196
Tssr80741 8 25976645 to 25976652 7 - TSS region transcription start site region 80741
Tssr80742 8 25976666 to 25976716 50 - TSS region transcription start site region 80742
Tssr2528 8 25976721 to 25976726 5 - TSS region transcription start site region 2528
Tssr80743 8 25976730 to 25976735 5 - TSS region transcription start site region 80743
Tssr80744 8 25976736 to 25976741 5 - TSS region transcription start site region 80744
Tssr80745 8 25976747 to 25976758 11 - TSS region transcription start site region 80745
Pomk 8 25980604 to 25994121 13517 - protein coding gene protein-O-mannose kinase
Cpgi20197 8 25986100 to 25986526 426 CpG island CpG island 20197
Tssr80746 8 25990092 to 25990115 23 - TSS region transcription start site region 80746
Gm31402 8 25992654 to 25998229 5575 + lncRNA gene predicted gene, 31402
Cpgi20198 8 25993783 to 25994392 609 CpG island CpG island 20198
Tssr80747 8 25994103 to 25994144 41 - TSS region transcription start site region 80747
Fnta 8 25998722 to 26015601 16879 - protein coding gene farnesyltransferase, CAAX box, alpha
D8Rck2 8 25999008 to 25999227 219 DNA segment DNA segment, Chr 8, Rockefeller University 2
Tssr80748 8 26001970 to 26001987 17 - TSS region transcription start site region 80748
Cpgi20199 8 26014836 to 26015769 933 CpG island CpG island 20199
Tssr80749 8 26015577 to 26015626 49 - TSS region transcription start site region 80749
Hook3 8 26021421 to 26119224 97803 - protein coding gene hook microtubule tethering protein 3
Gm45411 8 26023410 to 26032253 8843 + antisense lncRNA gene predicted gene 45411
Tssr80750 8 26026700 to 26026705 5 - TSS region transcription start site region 80750
5730564C23Rik 8 26051606 to 26052545 939 unclassified gene RIKEN cDNA 5730564C23 gene
Tssr80751 8 26058061 to 26058100 39 - TSS region transcription start site region 80751
Tssr80752 8 26059375 to 26059381 6 - TSS region transcription start site region 80752
Gm45413 8 26062515 to 26066052 3537 - unclassified gene predicted gene 45413
Tssr76734 8 26082603 to 26082625 22 + TSS region transcription start site region 76734
1700047A11Rik 8 26082609 to 26096520 13911 + antisense lncRNA gene RIKEN cDNA 1700047A11 gene
Tssr80753 8 26089873 to 26089883 10 - TSS region transcription start site region 80753
Gm18364 8 26103616 to 26104228 612 + pseudogene predicted gene, 18364
Cpgi20200 8 26118475 to 26120031 1556 CpG island CpG island 20200
Tssr80754 8 26119125 to 26119233 108 - TSS region transcription start site region 80754
Tssr80755 8 26119292 to 26119303 11 - TSS region transcription start site region 80755
Tssr76735 8 26119361 to 26119368 7 + TSS region transcription start site region 76735
Rnf170 8 26119365 to 26143874 24509 + protein coding gene ring finger protein 170
Tssr76736 8 26119461 to 26119539 78 + TSS region transcription start site region 76736
Gm45692 8 26119534 to 26160819 41285 + protein coding gene predicted gene 45692
Tssr76737 8 26119611 to 26119682 71 + TSS region transcription start site region 76737
Gm45251 8 26131178 to 26132642 1464 - unclassified gene predicted gene 45251
Gm45250 8 26151888 to 26155479 3591 - lincRNA gene predicted gene 45250
Cpgi20201 8 26157832 to 26159191 1359 CpG island CpG island 20201
Tssr80756 8 26158024 to 26158058 34 - TSS region transcription start site region 80756
Thap1 8 26158169 to 26164151 5982 + protein coding gene THAP domain containing, apoptosis associated protein 1
Tssr76738 8 26158186 to 26158252 66 + TSS region transcription start site region 76738
Tssr80757 8 26158545 to 26158580 35 - TSS region transcription start site region 80757
Cpgi20202 8 26184874 to 26185078 204 CpG island CpG island 20202
Gm44299 8 26219461 to 26219549 88 + miRNA gene predicted gene, 44299
Gm22227 8 26240150 to 26240408 258 - unclassified non-coding RNA gene predicted gene, 22227
Gm45305 8 26242724 to 26244051 1327 + lincRNA gene predicted gene 45305
Cpgi20203 8 26258561 to 26258850 289 CpG island CpG island 20203
Tssr76739 8 26266857 to 26266894 37 + TSS region transcription start site region 76739
Gm31727 8 26266977 to 26273555 6578 + lincRNA gene predicted gene, 31727
Gm31784 8 26298352 to 26312334 13982 - lincRNA gene predicted gene, 31784
Gm45307 8 26298634 to 26354163 55529 + lincRNA gene predicted gene 45307
Gm31843 8 26381686 to 26389138 7452 + lncRNA gene predicted gene, 31843
Gm39148 8 26386110 to 26389066 2956 - lncRNA gene predicted gene, 39148
Gm31898 8 26428281 to 26435713 7432 - lincRNA gene predicted gene, 31898
Gm45580 8 26438829 to 26440492 1663 + lincRNA gene predicted gene 45580
D8Mit290 8 26448465 to 26448582 117 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 290
Gm31983 8 26452793 to 26468559 15766 - lincRNA gene predicted gene, 31983
Cpgi20204 8 26509929 to 26510247 318 CpG island CpG island 20204
Cpgi20205 8 26533997 to 26534287 290 CpG island CpG island 20205
D8Mit356 8 26552986 to 26553235 249 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 356
Gm39149 8 26560461 to 26579802 19341 - lincRNA gene predicted gene, 39149
Gm32050 8 26626744 to 26627480 736 - lincRNA gene predicted gene, 32050
Gm45584 8 26637675 to 26639952 2277 + lincRNA gene predicted gene 45584
Gm32098 8 26665893 to 26668306 2413 - lincRNA gene predicted gene, 32098
Tssr76740 8 26698888 to 26698925 37 + TSS region transcription start site region 76740
Tssr2529 8 26717318 to 26717321 3 + TSS region transcription start site region 2529