Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25228668-25669107

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tacc1 8 25154552 to 25256583 102031 - protein coding gene transforming, acidic coiled-coil containing protein 1
Tssr80702 8 25238197 to 25238202 5 - TSS region transcription start site region 80702
Cpgi20181 8 25240359 to 25241120 761 CpG island CpG island 20181
Tssr80703 8 25240850 to 25240861 11 - TSS region transcription start site region 80703
Tssr80704 8 25240862 to 25240923 61 - TSS region transcription start site region 80704
Cpgi20182 8 25255880 to 25256465 585 CpG island CpG island 20182
Tssr80705 8 25256400 to 25256423 23 - TSS region transcription start site region 80705
Tssr80706 8 25256435 to 25256465 30 - TSS region transcription start site region 80706
Gm39144 8 25256481 to 25258509 2028 + lncRNA gene predicted gene, 39144
D8Dcr7 8 25259074 to 25259174 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 7
Gm39145 8 25271046 to 25279558 8512 + lncRNA gene predicted gene, 39145
Tssr76676 8 25274477 to 25274483 6 + TSS region transcription start site region 76676
Tssr76677 8 25274501 to 25274518 17 + TSS region transcription start site region 76677
Cpgi20183 8 25275141 to 25275564 423 CpG island CpG island 20183
5430421F17Rik 8 25302650 to 25306270 3620 - lincRNA gene RIKEN cDNA 5430421F17 gene
Tssr80707 8 25306203 to 25306217 14 - TSS region transcription start site region 80707
Tssr80708 8 25306221 to 25306239 18 - TSS region transcription start site region 80708
Gm39146 8 25353360 to 25389823 36463 - lncRNA gene predicted gene, 39146
Tssr2525 8 25363940 to 25363947 7 - TSS region transcription start site region 2525
Gm39147 8 25399076 to 25427396 28320 + pseudogene predicted gene, 39147
Gm30978 8 25415119 to 25429224 14105 - lincRNA gene predicted gene, 30978
Tssr76678 8 25426668 to 25426671 3 + TSS region transcription start site region 76678
Gm45237 8 25440618 to 25448762 8144 + lincRNA gene predicted gene 45237
Cpgi20184 8 25440781 to 25441040 259 CpG island CpG island 20184
Gm45238 8 25443668 to 25454107 10439 - lincRNA gene predicted gene 45238
Gm10689 8 25454273 to 25454704 431 + pseudogene predicted gene 10689
Gm31045 8 25463682 to 25483800 20118 - lincRNA gene predicted gene, 31045
Cpgi20185 8 25465855 to 25466217 362 CpG island CpG island 20185
Tssr80709 8 25499584 to 25499585 1 - TSS region transcription start site region 80709
Fgfr1 8 25513654 to 25575718 62064 + protein coding gene fibroblast growth factor receptor 1
Cpgi20186 8 25518477 to 25520025 1548 CpG island CpG island 20186
Tssr76679 8 25518630 to 25518643 13 + TSS region transcription start site region 76679
Tssr76680 8 25518757 to 25518771 14 + TSS region transcription start site region 76680
Tssr76681 8 25518783 to 25518801 18 + TSS region transcription start site region 76681
Gm31288 8 25520786 to 25543249 22463 - lncRNA gene predicted gene, 31288
Tssr76682 8 25532125 to 25532136 11 + TSS region transcription start site region 76682
Tssr80710 8 25544992 to 25545007 15 - TSS region transcription start site region 80710
Tssr80711 8 25548062 to 25548072 10 - TSS region transcription start site region 80711
Tssr80712 8 25548076 to 25548088 12 - TSS region transcription start site region 80712
Gm16159 8 25548673 to 25556083 7410 - antisense lncRNA gene predicted gene 16159
Tssr76683 8 25555059 to 25555070 11 + TSS region transcription start site region 76683
Cpgi20187 8 25555533 to 25556044 511 CpG island CpG island 20187
Tssr80713 8 25556134 to 25556152 18 - TSS region transcription start site region 80713
Tssr80714 8 25556161 to 25556184 23 - TSS region transcription start site region 80714
Tssr76684 8 25564413 to 25564437 24 + TSS region transcription start site region 76684
Tssr76685 8 25574062 to 25574074 12 + TSS region transcription start site region 76685
Letm2 8 25578490 to 25597582 19092 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 2
Tssr80715 8 25589450 to 25589460 10 - TSS region transcription start site region 80715
Tssr80716 8 25589519 to 25589555 36 - TSS region transcription start site region 80716
Gm45570 8 25594454 to 25595106 652 - sense intronic lncRNA gene predicted gene 45570
Cpgi20188 8 25596931 to 25597814 883 CpG island CpG island 20188
Tssr80717 8 25597000 to 25597038 38 - TSS region transcription start site region 80717
D830025C05Rik 8 25597012 to 25599207 2195 + antisense lncRNA gene RIKEN cDNA D830025C05 gene
Tssr76686 8 25597096 to 25597127 31 + TSS region transcription start site region 76686
Tssr80718 8 25597459 to 25597517 58 - TSS region transcription start site region 80718
Tssr80719 8 25597541 to 25597598 57 - TSS region transcription start site region 80719
Tssr80720 8 25597611 to 25597614 3 - TSS region transcription start site region 80720
Tssr76687 8 25597694 to 25597705 11 + TSS region transcription start site region 76687
Cpgi20189 8 25601266 to 25602939 1673 CpG island CpG island 20189
Tssr76688 8 25601466 to 25601477 11 + TSS region transcription start site region 76688
Tssr76689 8 25601487 to 25601497 10 + TSS region transcription start site region 76689
Tssr76690 8 25601505 to 25601516 11 + TSS region transcription start site region 76690
Tssr76691 8 25601562 to 25601574 12 + TSS region transcription start site region 76691
Tssr76692 8 25601591 to 25601607 16 + TSS region transcription start site region 76692
Nsd3 8 25601601 to 25719667 118066 + protein coding gene nuclear receptor binding SET domain protein 3
Tssr76693 8 25601617 to 25601670 53 + TSS region transcription start site region 76693
Tssr76694 8 25601694 to 25601703 9 + TSS region transcription start site region 76694
Tssr80721 8 25601820 to 25601849 29 - TSS region transcription start site region 80721
Tssr80722 8 25602050 to 25602060 10 - TSS region transcription start site region 80722
Tssr80723 8 25602070 to 25602090 20 - TSS region transcription start site region 80723
Tssr76695 8 25602236 to 25602315 79 + TSS region transcription start site region 76695
Tssr76696 8 25602463 to 25602472 9 + TSS region transcription start site region 76696
Gm23184 8 25610428 to 25610558 130 - snoRNA gene predicted gene, 23184
Gm24992 8 25631950 to 25632079 129 + snoRNA gene predicted gene, 24992
Tssr76697 8 25640705 to 25640728 23 + TSS region transcription start site region 76697
Tssr76698 8 25640733 to 25640841 108 + TSS region transcription start site region 76698
Tssr76699 8 25640901 to 25640948 47 + TSS region transcription start site region 76699
Tssr76700 8 25643939 to 25643947 8 + TSS region transcription start site region 76700
Tssr76701 8 25649397 to 25649415 18 + TSS region transcription start site region 76701
Tssr80724 8 25661474 to 25661480 6 - TSS region transcription start site region 80724