Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25095855-25836217

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekha2 8 25039144 to 25102376 63232 - protein coding gene pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
Tssr76668 8 25101072 to 25101104 32 + TSS region transcription start site region 76668
5830408C22Rik 8 25101216 to 25109986 8770 + unclassified non-coding RNA gene RIKEN cDNA 5830408C22 gene
Cpgi20179 8 25101548 to 25103172 1624 CpG island CpG island 20179
Tssr80677 8 25101599 to 25101608 9 - TSS region transcription start site region 80677
Tssr2524 8 25101606 to 25101627 21 + TSS region transcription start site region 2524
Tssr80678 8 25101702 to 25101713 11 - TSS region transcription start site region 80678
Tssr80679 8 25101734 to 25101792 58 - TSS region transcription start site region 80679
Tssr76669 8 25101870 to 25101886 16 + TSS region transcription start site region 76669
Tssr76670 8 25101914 to 25101953 39 + TSS region transcription start site region 76670
Tssr80680 8 25102107 to 25102169 62 - TSS region transcription start site region 80680
Tssr80681 8 25102179 to 25102194 15 - TSS region transcription start site region 80681
Tssr80682 8 25102369 to 25102388 19 - TSS region transcription start site region 80682
Tssr80683 8 25102543 to 25102570 27 - TSS region transcription start site region 80683
Tssr80684 8 25103014 to 25103030 16 - TSS region transcription start site region 80684
Tssr76671 8 25103485 to 25103489 4 + TSS region transcription start site region 76671
Gm45745 8 25103489 to 25104668 1179 - unclassified gene predicted gene 45745
Tssr80685 8 25104661 to 25104689 28 - TSS region transcription start site region 80685
Tssr80686 8 25104700 to 25104709 9 - TSS region transcription start site region 80686
Tssr80687 8 25104791 to 25104806 15 - TSS region transcription start site region 80687
Tssr76672 8 25118240 to 25118282 42 + TSS region transcription start site region 76672
Tssr80688 8 25119079 to 25119095 16 - TSS region transcription start site region 80688
Gm39143 8 25129572 to 25133208 3636 + lncRNA gene predicted gene, 39143
Tacc1 8 25154552 to 25256583 102031 - protein coding gene transforming, acidic coiled-coil containing protein 1
Tssr80689 8 25158025 to 25158040 15 - TSS region transcription start site region 80689
Tssr80690 8 25158147 to 25158157 10 - TSS region transcription start site region 80690
Mir8108 8 25159125 to 25159233 108 - miRNA gene microRNA 8108
Tssr80691 8 25159659 to 25159681 22 - TSS region transcription start site region 80691
Tssr80692 8 25169261 to 25169276 15 - TSS region transcription start site region 80692
Tssr76673 8 25198851 to 25198856 5 + TSS region transcription start site region 76673
Tssr76674 8 25200458 to 25200463 5 + TSS region transcription start site region 76674
Cpgi20180 8 25200555 to 25202075 1520 CpG island CpG island 20180
Tssr80693 8 25201315 to 25201344 29 - TSS region transcription start site region 80693
Tssr80694 8 25201349 to 25201459 110 - TSS region transcription start site region 80694
Tssr76675 8 25201454 to 25201457 3 + TSS region transcription start site region 76675
Tssr80695 8 25201536 to 25201603 67 - TSS region transcription start site region 80695
Tssr80696 8 25201785 to 25201794 9 - TSS region transcription start site region 80696
Tssr80697 8 25202439 to 25202446 7 - TSS region transcription start site region 80697
Tssr80698 8 25203819 to 25203843 24 - TSS region transcription start site region 80698
Tssr80699 8 25203858 to 25203876 18 - TSS region transcription start site region 80699
Tssr80700 8 25203894 to 25203923 29 - TSS region transcription start site region 80700
D8Mit287 8 25204925 to 25205049 124 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 287
Tssr80701 8 25205848 to 25205859 11 - TSS region transcription start site region 80701
Tssr80702 8 25238197 to 25238202 5 - TSS region transcription start site region 80702
Cpgi20181 8 25240359 to 25241120 761 CpG island CpG island 20181
Tssr80703 8 25240850 to 25240861 11 - TSS region transcription start site region 80703
Tssr80704 8 25240862 to 25240923 61 - TSS region transcription start site region 80704
Cpgi20182 8 25255880 to 25256465 585 CpG island CpG island 20182
Tssr80705 8 25256400 to 25256423 23 - TSS region transcription start site region 80705
Tssr80706 8 25256435 to 25256465 30 - TSS region transcription start site region 80706
Gm39144 8 25256481 to 25258509 2028 + lncRNA gene predicted gene, 39144
D8Dcr7 8 25259074 to 25259174 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 7
Gm39145 8 25271046 to 25279558 8512 + lncRNA gene predicted gene, 39145
Tssr76676 8 25274477 to 25274483 6 + TSS region transcription start site region 76676
Tssr76677 8 25274501 to 25274518 17 + TSS region transcription start site region 76677
Cpgi20183 8 25275141 to 25275564 423 CpG island CpG island 20183
5430421F17Rik 8 25302650 to 25306270 3620 - lincRNA gene RIKEN cDNA 5430421F17 gene
Tssr80707 8 25306203 to 25306217 14 - TSS region transcription start site region 80707
Tssr80708 8 25306221 to 25306239 18 - TSS region transcription start site region 80708
Gm39146 8 25353360 to 25389823 36463 - lncRNA gene predicted gene, 39146
Tssr2525 8 25363940 to 25363947 7 - TSS region transcription start site region 2525
Gm39147 8 25399076 to 25427396 28320 + pseudogene predicted gene, 39147
Gm30978 8 25415119 to 25429224 14105 - lincRNA gene predicted gene, 30978
Tssr76678 8 25426668 to 25426671 3 + TSS region transcription start site region 76678
Gm45237 8 25440618 to 25448762 8144 + lincRNA gene predicted gene 45237
Cpgi20184 8 25440781 to 25441040 259 CpG island CpG island 20184
Gm45238 8 25443668 to 25454107 10439 - lincRNA gene predicted gene 45238
Gm10689 8 25454273 to 25454704 431 + pseudogene predicted gene 10689
Gm31045 8 25463682 to 25483800 20118 - lincRNA gene predicted gene, 31045
Cpgi20185 8 25465855 to 25466217 362 CpG island CpG island 20185
Tssr80709 8 25499584 to 25499585 1 - TSS region transcription start site region 80709
Fgfr1 8 25513654 to 25575718 62064 + protein coding gene fibroblast growth factor receptor 1
Cpgi20186 8 25518477 to 25520025 1548 CpG island CpG island 20186
Tssr76679 8 25518630 to 25518643 13 + TSS region transcription start site region 76679
Tssr76680 8 25518757 to 25518771 14 + TSS region transcription start site region 76680
Tssr76681 8 25518783 to 25518801 18 + TSS region transcription start site region 76681
Gm31288 8 25520786 to 25543249 22463 - lncRNA gene predicted gene, 31288
Tssr76682 8 25532125 to 25532136 11 + TSS region transcription start site region 76682
Tssr80710 8 25544992 to 25545007 15 - TSS region transcription start site region 80710
Tssr80711 8 25548062 to 25548072 10 - TSS region transcription start site region 80711
Tssr80712 8 25548076 to 25548088 12 - TSS region transcription start site region 80712
Gm16159 8 25548673 to 25556083 7410 - antisense lncRNA gene predicted gene 16159
Tssr76683 8 25555059 to 25555070 11 + TSS region transcription start site region 76683
Cpgi20187 8 25555533 to 25556044 511 CpG island CpG island 20187
Tssr80713 8 25556134 to 25556152 18 - TSS region transcription start site region 80713
Tssr80714 8 25556161 to 25556184 23 - TSS region transcription start site region 80714
Tssr76684 8 25564413 to 25564437 24 + TSS region transcription start site region 76684
Tssr76685 8 25574062 to 25574074 12 + TSS region transcription start site region 76685
Letm2 8 25578490 to 25597582 19092 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 2
Tssr80715 8 25589450 to 25589460 10 - TSS region transcription start site region 80715
Tssr80716 8 25589519 to 25589555 36 - TSS region transcription start site region 80716
Gm45570 8 25594454 to 25595106 652 - sense intronic lncRNA gene predicted gene 45570
Cpgi20188 8 25596931 to 25597814 883 CpG island CpG island 20188
Tssr80717 8 25597000 to 25597038 38 - TSS region transcription start site region 80717
D830025C05Rik 8 25597012 to 25599207 2195 + antisense lncRNA gene RIKEN cDNA D830025C05 gene
Tssr76686 8 25597096 to 25597127 31 + TSS region transcription start site region 76686
Tssr80718 8 25597459 to 25597517 58 - TSS region transcription start site region 80718
Tssr80719 8 25597541 to 25597598 57 - TSS region transcription start site region 80719
Tssr80720 8 25597611 to 25597614 3 - TSS region transcription start site region 80720
Tssr76687 8 25597694 to 25597705 11 + TSS region transcription start site region 76687
Cpgi20189 8 25601266 to 25602939 1673 CpG island CpG island 20189
Tssr76688 8 25601466 to 25601477 11 + TSS region transcription start site region 76688
Tssr76689 8 25601487 to 25601497 10 + TSS region transcription start site region 76689
Tssr76690 8 25601505 to 25601516 11 + TSS region transcription start site region 76690
Tssr76691 8 25601562 to 25601574 12 + TSS region transcription start site region 76691
Tssr76692 8 25601591 to 25601607 16 + TSS region transcription start site region 76692
Nsd3 8 25601601 to 25719667 118066 + protein coding gene nuclear receptor binding SET domain protein 3
Tssr76693 8 25601617 to 25601670 53 + TSS region transcription start site region 76693
Tssr76694 8 25601694 to 25601703 9 + TSS region transcription start site region 76694
Tssr80721 8 25601820 to 25601849 29 - TSS region transcription start site region 80721
Tssr80722 8 25602050 to 25602060 10 - TSS region transcription start site region 80722
Tssr80723 8 25602070 to 25602090 20 - TSS region transcription start site region 80723
Tssr76695 8 25602236 to 25602315 79 + TSS region transcription start site region 76695
Tssr76696 8 25602463 to 25602472 9 + TSS region transcription start site region 76696
Gm23184 8 25610428 to 25610558 130 - snoRNA gene predicted gene, 23184
Gm24992 8 25631950 to 25632079 129 + snoRNA gene predicted gene, 24992
Tssr76697 8 25640705 to 25640728 23 + TSS region transcription start site region 76697
Tssr76698 8 25640733 to 25640841 108 + TSS region transcription start site region 76698
Tssr76699 8 25640901 to 25640948 47 + TSS region transcription start site region 76699
Tssr76700 8 25643939 to 25643947 8 + TSS region transcription start site region 76700
Tssr76701 8 25649397 to 25649415 18 + TSS region transcription start site region 76701
Tssr80724 8 25661474 to 25661480 6 - TSS region transcription start site region 80724
Tssr76702 8 25673979 to 25673991 12 + TSS region transcription start site region 76702
Tssr76703 8 25677002 to 25677007 5 + TSS region transcription start site region 76703
Gm23094 8 25678950 to 25679271 321 + unclassified non-coding RNA gene predicted gene, 23094
Gm45343 8 25687369 to 25688196 827 + unclassified gene predicted gene 45343
Tssr76704 8 25687684 to 25687705 21 + TSS region transcription start site region 76704
Gm45342 8 25692146 to 25693508 1362 + unclassified gene predicted gene 45342
Tssr76705 8 25716572 to 25716584 12 + TSS region transcription start site region 76705
Cpgi20190 8 25719899 to 25720697 798 CpG island CpG island 20190
Plpp5 8 25720037 to 25724887 4850 + protein coding gene phospholipid phosphatase 5
Tssr76706 8 25720042 to 25720053 11 + TSS region transcription start site region 76706
Tssr76707 8 25720054 to 25720099 45 + TSS region transcription start site region 76707
Tssr76708 8 25720135 to 25720148 13 + TSS region transcription start site region 76708
Tssr76709 8 25720259 to 25720304 45 + TSS region transcription start site region 76709
Tssr76710 8 25720459 to 25720474 15 + TSS region transcription start site region 76710
Ddhd2 8 25725324 to 25754407 29083 - protein coding gene DDHD domain containing 2
D8Ertd317e 8 25729970 to 25730212 242 DNA segment DNA segment, Chr 8, ERATO Doi 317, expressed
6430710M23Rik 8 25744390 to 25745580 1190 - unclassified gene RIKEN cDNA 6430710M23 gene
Cpgi20191 8 25753744 to 25754898 1154 CpG island CpG island 20191
Tssr80725 8 25754214 to 25754250 36 - TSS region transcription start site region 80725
Tssr2526 8 25754252 to 25754275 23 - TSS region transcription start site region 2526
Tssr80726 8 25754352 to 25754424 72 - TSS region transcription start site region 80726
Tssr76711 8 25754462 to 25754485 23 + TSS region transcription start site region 76711
Gm17484 8 25754480 to 25769704 15224 + lincRNA gene predicted gene, 17484
Tssr76712 8 25754492 to 25754514 22 + TSS region transcription start site region 76712
Bag4 8 25764538 to 25785209 20671 - protein coding gene BCL2-associated athanogene 4
Tssr80727 8 25769583 to 25769593 10 - TSS region transcription start site region 80727
Gm19075 8 25775836 to 25776513 677 - pseudogene predicted gene, 19075
Cpgi20192 8 25784461 to 25786114 1653 CpG island CpG island 20192
Tssr80728 8 25785154 to 25785215 61 - TSS region transcription start site region 80728
Tssr80729 8 25785223 to 25785230 7 - TSS region transcription start site region 80729
Tssr76713 8 25785289 to 25785319 30 + TSS region transcription start site region 76713
Lsm1 8 25785536 to 25803975 18439 + protein coding gene LSM1 homolog, mRNA degradation associated
Tssr76714 8 25785538 to 25785587 49 + TSS region transcription start site region 76714
Tssr76715 8 25785597 to 25785603 6 + TSS region transcription start site region 76715
Gm46037 8 25788823 to 25789353 530 - pseudogene predicted gene, 46037
Tssr80730 8 25789315 to 25789324 9 - TSS region transcription start site region 80730
Tssr80731 8 25797072 to 25797077 5 - TSS region transcription start site region 80731
Tssr80732 8 25808248 to 25808250 2 - TSS region transcription start site region 80732
Tssr76716 8 25808494 to 25808513 19 + TSS region transcription start site region 76716
Star 8 25808513 to 25815982 7469 + protein coding gene steroidogenic acute regulatory protein
Tssr76717 8 25808652 to 25808661 9 + TSS region transcription start site region 76717
Tssr76718 8 25809862 to 25809874 12 + TSS region transcription start site region 76718
Tssr80733 8 25812970 to 25813003 33 - TSS region transcription start site region 80733
Tssr76719 8 25812974 to 25812986 12 + TSS region transcription start site region 76719
Tssr76720 8 25813036 to 25813043 7 + TSS region transcription start site region 76720
Tssr76721 8 25813052 to 25813061 9 + TSS region transcription start site region 76721
Tssr76722 8 25813088 to 25813099 11 + TSS region transcription start site region 76722
Tssr80734 8 25813163 to 25813180 17 - TSS region transcription start site region 80734
Tssr76723 8 25813366 to 25813379 13 + TSS region transcription start site region 76723
Tssr76724 8 25813613 to 25813633 20 + TSS region transcription start site region 76724
Tssr2527 8 25813761 to 25813772 11 + TSS region transcription start site region 2527
Tssr76725 8 25814524 to 25814545 21 + TSS region transcription start site region 76725
Tssr76726 8 25815207 to 25815214 7 + TSS region transcription start site region 76726
Ash2l 8 25816000 to 25847694 31694 - protein coding gene ASH2 like histone lysine methyltransferase complex subunit