Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:25081203-25531217

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekha2 8 25039144 to 25102376 63232 - protein coding gene pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
Tssr80673 8 25087533 to 25087538 5 - TSS region transcription start site region 80673
Tssr80674 8 25088514 to 25088545 31 - TSS region transcription start site region 80674
Tssr80675 8 25091341 to 25091351 10 - TSS region transcription start site region 80675
Tssr80676 8 25091364 to 25091372 8 - TSS region transcription start site region 80676
Tssr76668 8 25101072 to 25101104 32 + TSS region transcription start site region 76668
5830408C22Rik 8 25101216 to 25109986 8770 + unclassified non-coding RNA gene RIKEN cDNA 5830408C22 gene
Cpgi20179 8 25101548 to 25103172 1624 CpG island CpG island 20179
Tssr80677 8 25101599 to 25101608 9 - TSS region transcription start site region 80677
Tssr2524 8 25101606 to 25101627 21 + TSS region transcription start site region 2524
Tssr80678 8 25101702 to 25101713 11 - TSS region transcription start site region 80678
Tssr80679 8 25101734 to 25101792 58 - TSS region transcription start site region 80679
Tssr76669 8 25101870 to 25101886 16 + TSS region transcription start site region 76669
Tssr76670 8 25101914 to 25101953 39 + TSS region transcription start site region 76670
Tssr80680 8 25102107 to 25102169 62 - TSS region transcription start site region 80680
Tssr80681 8 25102179 to 25102194 15 - TSS region transcription start site region 80681
Tssr80682 8 25102369 to 25102388 19 - TSS region transcription start site region 80682
Tssr80683 8 25102543 to 25102570 27 - TSS region transcription start site region 80683
Tssr80684 8 25103014 to 25103030 16 - TSS region transcription start site region 80684
Tssr76671 8 25103485 to 25103489 4 + TSS region transcription start site region 76671
Gm45745 8 25103489 to 25104668 1179 - unclassified gene predicted gene 45745
Tssr80685 8 25104661 to 25104689 28 - TSS region transcription start site region 80685
Tssr80686 8 25104700 to 25104709 9 - TSS region transcription start site region 80686
Tssr80687 8 25104791 to 25104806 15 - TSS region transcription start site region 80687
Tssr76672 8 25118240 to 25118282 42 + TSS region transcription start site region 76672
Tssr80688 8 25119079 to 25119095 16 - TSS region transcription start site region 80688
Gm39143 8 25129572 to 25133208 3636 + lncRNA gene predicted gene, 39143
Tacc1 8 25154552 to 25256583 102031 - protein coding gene transforming, acidic coiled-coil containing protein 1
Tssr80689 8 25158025 to 25158040 15 - TSS region transcription start site region 80689
Tssr80690 8 25158147 to 25158157 10 - TSS region transcription start site region 80690
Mir8108 8 25159125 to 25159233 108 - miRNA gene microRNA 8108
Tssr80691 8 25159659 to 25159681 22 - TSS region transcription start site region 80691
Tssr80692 8 25169261 to 25169276 15 - TSS region transcription start site region 80692
Tssr76673 8 25198851 to 25198856 5 + TSS region transcription start site region 76673
Tssr76674 8 25200458 to 25200463 5 + TSS region transcription start site region 76674
Cpgi20180 8 25200555 to 25202075 1520 CpG island CpG island 20180
Tssr80693 8 25201315 to 25201344 29 - TSS region transcription start site region 80693
Tssr80694 8 25201349 to 25201459 110 - TSS region transcription start site region 80694
Tssr76675 8 25201454 to 25201457 3 + TSS region transcription start site region 76675
Tssr80695 8 25201536 to 25201603 67 - TSS region transcription start site region 80695
Tssr80696 8 25201785 to 25201794 9 - TSS region transcription start site region 80696
Tssr80697 8 25202439 to 25202446 7 - TSS region transcription start site region 80697
Tssr80698 8 25203819 to 25203843 24 - TSS region transcription start site region 80698
Tssr80699 8 25203858 to 25203876 18 - TSS region transcription start site region 80699
Tssr80700 8 25203894 to 25203923 29 - TSS region transcription start site region 80700
D8Mit287 8 25204925 to 25205049 124 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 287
Tssr80701 8 25205848 to 25205859 11 - TSS region transcription start site region 80701
Tssr80702 8 25238197 to 25238202 5 - TSS region transcription start site region 80702
Cpgi20181 8 25240359 to 25241120 761 CpG island CpG island 20181
Tssr80703 8 25240850 to 25240861 11 - TSS region transcription start site region 80703
Tssr80704 8 25240862 to 25240923 61 - TSS region transcription start site region 80704
Cpgi20182 8 25255880 to 25256465 585 CpG island CpG island 20182
Tssr80705 8 25256400 to 25256423 23 - TSS region transcription start site region 80705
Tssr80706 8 25256435 to 25256465 30 - TSS region transcription start site region 80706
Gm39144 8 25256481 to 25258509 2028 + lncRNA gene predicted gene, 39144
D8Dcr7 8 25259074 to 25259174 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 7
Gm39145 8 25271046 to 25279558 8512 + lncRNA gene predicted gene, 39145
Tssr76676 8 25274477 to 25274483 6 + TSS region transcription start site region 76676
Tssr76677 8 25274501 to 25274518 17 + TSS region transcription start site region 76677
Cpgi20183 8 25275141 to 25275564 423 CpG island CpG island 20183
5430421F17Rik 8 25302650 to 25306270 3620 - lincRNA gene RIKEN cDNA 5430421F17 gene
Tssr80707 8 25306203 to 25306217 14 - TSS region transcription start site region 80707
Tssr80708 8 25306221 to 25306239 18 - TSS region transcription start site region 80708
Gm39146 8 25353360 to 25389823 36463 - lncRNA gene predicted gene, 39146
Tssr2525 8 25363940 to 25363947 7 - TSS region transcription start site region 2525
Gm39147 8 25399076 to 25427396 28320 + pseudogene predicted gene, 39147
Gm30978 8 25415119 to 25429224 14105 - lincRNA gene predicted gene, 30978
Tssr76678 8 25426668 to 25426671 3 + TSS region transcription start site region 76678
Gm45237 8 25440618 to 25448762 8144 + lincRNA gene predicted gene 45237
Cpgi20184 8 25440781 to 25441040 259 CpG island CpG island 20184
Gm45238 8 25443668 to 25454107 10439 - lincRNA gene predicted gene 45238
Gm10689 8 25454273 to 25454704 431 + pseudogene predicted gene 10689
Gm31045 8 25463682 to 25483800 20118 - lincRNA gene predicted gene, 31045
Cpgi20185 8 25465855 to 25466217 362 CpG island CpG island 20185
Tssr80709 8 25499584 to 25499585 1 - TSS region transcription start site region 80709
Fgfr1 8 25513654 to 25575718 62064 + protein coding gene fibroblast growth factor receptor 1
Cpgi20186 8 25518477 to 25520025 1548 CpG island CpG island 20186
Tssr76679 8 25518630 to 25518643 13 + TSS region transcription start site region 76679
Tssr76680 8 25518757 to 25518771 14 + TSS region transcription start site region 76680
Tssr76681 8 25518783 to 25518801 18 + TSS region transcription start site region 76681
Gm31288 8 25520786 to 25543249 22463 - lncRNA gene predicted gene, 31288