Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:23402500-24612638

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30370 8 23387121 to 23404313 17192 - lncRNA gene predicted gene, 30370
Cpgi20168 8 23411047 to 23412507 1460 CpG island CpG island 20168
Tssr76633 8 23411246 to 23411270 24 + TSS region transcription start site region 76633
Tssr76634 8 23411272 to 23411300 28 + TSS region transcription start site region 76634
Tssr76635 8 23411490 to 23411507 17 + TSS region transcription start site region 76635
Sfrp1 8 23411502 to 23449632 38130 + protein coding gene secreted frizzled-related protein 1
Tssr76636 8 23411927 to 23411941 14 + TSS region transcription start site region 76636
Tssr76637 8 23446572 to 23446581 9 + TSS region transcription start site region 76637
Tssr76638 8 23446702 to 23446717 15 + TSS region transcription start site region 76638
Tssr76639 8 23446751 to 23446754 3 + TSS region transcription start site region 76639
Tssr76640 8 23446869 to 23446881 12 + TSS region transcription start site region 76640
Tssr76641 8 23446889 to 23446909 20 + TSS region transcription start site region 76641
Tssr76642 8 23446912 to 23446932 20 + TSS region transcription start site region 76642
Tssr76643 8 23446942 to 23446969 27 + TSS region transcription start site region 76643
Tssr76644 8 23446973 to 23446993 20 + TSS region transcription start site region 76644
Tssr76645 8 23448521 to 23448523 2 + TSS region transcription start site region 76645
4930413E20Rik 8 23534472 to 23535739 1267 + lncRNA gene RIKEN cDNA 4930413E20 gene
Tssr76646 8 23535193 to 23535202 9 + TSS region transcription start site region 76646
D8Dcr6 8 23590956 to 23591051 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 6
Cpgi20169 8 23629977 to 23630216 239 CpG island CpG island 20169
Cpgi20170 8 23633867 to 23634046 179 CpG island CpG island 20170
Gm30471 8 23635080 to 23648505 13425 - lncRNA gene predicted gene, 30471
Zmat4 8 23647388 to 24063117 415729 + protein coding gene zinc finger, matrin type 4
Tssr80635 8 23648516 to 23648544 28 - TSS region transcription start site region 80635
Cpgi20171 8 23669514 to 23669860 346 CpG island CpG island 20171
Tssr76647 8 23669653 to 23669671 18 + TSS region transcription start site region 76647
Gm45165 8 23696005 to 23697635 1630 + unclassified gene predicted gene 45165
Gm45166 8 23752083 to 23752765 682 - unclassified gene predicted gene 45166
Tssr76648 8 23776584 to 23776608 24 + TSS region transcription start site region 76648
D8Mit143 8 23845507 to 23845785 278 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 143
D8Mit222 8 24007500 to 24007638 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 222
D8Mit23 8 24020007 to 24020260 253 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 23
Tssr76649 8 24044474 to 24044488 14 + TSS region transcription start site region 76649
Tssr76650 8 24044518 to 24044536 18 + TSS region transcription start site region 76650
A730045E13Rik 8 24173904 to 24185568 11664 + lincRNA gene RIKEN cDNA A730045E13 gene
Cpgi20172 8 24180797 to 24180964 167 CpG island CpG island 20172
Gm45163 8 24220510 to 24230146 9636 + lincRNA gene predicted gene 45163
Gm45164 8 24353944 to 24359436 5492 - lincRNA gene predicted gene 45164
Gm30633 8 24382131 to 24391067 8936 + lncRNA gene predicted gene, 30633
Tssr76651 8 24395791 to 24395794 3 + TSS region transcription start site region 76651
Tssr2517 8 24399222 to 24399226 4 + TSS region transcription start site region 2517
Gm30692 8 24412331 to 24416936 4605 + lincRNA gene predicted gene, 30692
Tssr76652 8 24413094 to 24413101 7 + TSS region transcription start site region 76652
Tssr76653 8 24419599 to 24419600 1 + TSS region transcription start site region 76653
Gm26714 8 24422404 to 24440008 17604 + antisense lncRNA gene predicted gene, 26714
Gm30757 8 24429438 to 24431124 1686 - lncRNA gene predicted gene, 30757
Tcim 8 24437616 to 24438946 1330 - protein coding gene transcriptional and immune response regulator
Tssr80636 8 24438937 to 24438952 15 - TSS region transcription start site region 80636
Gm30845 8 24440880 to 24447864 6984 - lncRNA gene predicted gene, 30845
Gm44620 8 24447097 to 24449983 2886 + unclassified gene predicted gene 44620
Tssr76654 8 24480062 to 24480108 46 + TSS region transcription start site region 76654
D8Mit95 8 24494173 to 24494326 153 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 95
Ap8q 8 24494173 to 24494326 153 QTL alcohol preference 8 QTL
Tssr76655 8 24503086 to 24503087 1 + TSS region transcription start site region 76655
Tssr76656 8 24503093 to 24503106 13 + TSS region transcription start site region 76656
Tssr76657 8 24503140 to 24503144 4 + TSS region transcription start site region 76657
9130214F15Rik 8 24506430 to 24508082 1652 + lncRNA gene RIKEN cDNA 9130214F15 gene
Ido2 8 24531892 to 24576333 44441 - protein coding gene indoleamine 2,3-dioxygenase 2
Tssr80637 8 24554320 to 24554334 14 - TSS region transcription start site region 80637
Tssr80638 8 24571210 to 24571218 8 - TSS region transcription start site region 80638
Tssr80639 8 24576276 to 24576283 7 - TSS region transcription start site region 80639
Tssr80640 8 24576297 to 24576368 71 - TSS region transcription start site region 80640
Ido1 8 24584133 to 24596952 12819 - protein coding gene indoleamine 2,3-dioxygenase 1
Tssr80641 8 24585350 to 24585374 24 - TSS region transcription start site region 80641
Cpgi20173 8 24595515 to 24595965 450 CpG island CpG island 20173
Tssr80642 8 24595602 to 24595610 8 - TSS region transcription start site region 80642
Tssr80643 8 24595611 to 24595617 6 - TSS region transcription start site region 80643
Tssr80644 8 24595634 to 24595671 37 - TSS region transcription start site region 80644
Tssr76658 8 24595777 to 24595782 5 + TSS region transcription start site region 76658
Tssr80645 8 24596960 to 24596976 16 - TSS region transcription start site region 80645
Adam18 8 24602246 to 24674755 72509 - protein coding gene a disintegrin and metallopeptidase domain 18