Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:23146572-23746581

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ank1 8 22974844 to 23150497 175653 + protein coding gene ankyrin 1, erythroid
Gm15816 8 23138794 to 23149585 10791 - antisense lncRNA gene predicted gene 15816
Tssr76625 8 23148589 to 23148615 26 + TSS region transcription start site region 76625
Cpgi20163 8 23149480 to 23150308 828 CpG island CpG island 20163
Tssr76626 8 23153263 to 23153276 13 + TSS region transcription start site region 76626
Nkx6-3 8 23153271 to 23158948 5677 + protein coding gene NK6 homeobox 3
Tssr76627 8 23153294 to 23153305 11 + TSS region transcription start site region 76627
Tssr76628 8 23153427 to 23153436 9 + TSS region transcription start site region 76628
Cpgi20164 8 23157274 to 23158086 812 CpG island CpG island 20164
Tssr80619 8 23162961 to 23162972 11 - TSS region transcription start site region 80619
Gm30306 8 23164726 to 23169554 4828 - lncRNA gene predicted gene, 30306
Tssr80620 8 23165944 to 23165950 6 - TSS region transcription start site region 80620
Gm30247 8 23167760 to 23171183 3423 + lncRNA gene predicted gene, 30247
Tssr76629 8 23167777 to 23167824 47 + TSS region transcription start site region 76629
Gpat4 8 23171265 to 23208346 37081 - protein coding gene glycerol-3-phosphate acyltransferase 4
Tssr80621 8 23181420 to 23181423 3 - TSS region transcription start site region 80621
Tssr80622 8 23191047 to 23191058 11 - TSS region transcription start site region 80622
Tssr80623 8 23191178 to 23191198 20 - TSS region transcription start site region 80623
Tssr80624 8 23191570 to 23191580 10 - TSS region transcription start site region 80624
Tssr80625 8 23191584 to 23191598 14 - TSS region transcription start site region 80625
Tssr80626 8 23193526 to 23193531 5 - TSS region transcription start site region 80626
Cpgi20165 8 23207627 to 23209014 1387 CpG island CpG island 20165
Tssr80627 8 23208319 to 23208356 37 - TSS region transcription start site region 80627
Tssr80628 8 23208361 to 23208404 43 - TSS region transcription start site region 80628
Tssr80629 8 23208407 to 23208412 5 - TSS region transcription start site region 80629
B230112G18Rik 8 23208512 to 23209362 850 + unclassified gene RIKEN cDNA B230112G18 gene
Tssr80630 8 23209021 to 23209030 9 - TSS region transcription start site region 80630
Gins4 8 23226616 to 23237659 11043 - protein coding gene GINS complex subunit 4 (Sld5 homolog)
Tssr80631 8 23231540 to 23231545 5 - TSS region transcription start site region 80631
Tssr76630 8 23237019 to 23237020 1 + TSS region transcription start site region 76630
Cpgi20166 8 23237209 to 23238029 820 CpG island CpG island 20166
Tssr80632 8 23237623 to 23237681 58 - TSS region transcription start site region 80632
Golga7 8 23241346 to 23257074 15728 - protein coding gene golgi autoantigen, golgin subfamily a, 7
Gm39141 8 23250409 to 23252984 2575 + lncRNA gene predicted gene, 39141
Cpgi20167 8 23256485 to 23257420 935 CpG island CpG island 20167
4930518F22Rik 8 23256634 to 23258908 2274 unclassified gene RIKEN cDNA 4930518F22 gene
Gm45412 8 23256635 to 23258909 2274 + unclassified gene predicted gene 45412
Tssr80633 8 23257009 to 23257031 22 - TSS region transcription start site region 80633
Tssr80634 8 23257043 to 23257086 43 - TSS region transcription start site region 80634
D8Mit171 8 23263652 to 23263799 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 171
Pnhdlc3 8 23263799 to 7162499 -16101300 QTL plasma non-HDL cholesterol 3
Tssr76631 8 23272548 to 23272574 26 + TSS region transcription start site region 76631
Gm24335 8 23290033 to 23290164 131 - snoRNA gene predicted gene, 24335
Tssr76632 8 23314689 to 23314691 2 + TSS region transcription start site region 76632
Gm30370 8 23387121 to 23404313 17192 - lncRNA gene predicted gene, 30370
Cpgi20168 8 23411047 to 23412507 1460 CpG island CpG island 20168
Tssr76633 8 23411246 to 23411270 24 + TSS region transcription start site region 76633
Tssr76634 8 23411272 to 23411300 28 + TSS region transcription start site region 76634
Tssr76635 8 23411490 to 23411507 17 + TSS region transcription start site region 76635
Sfrp1 8 23411502 to 23449632 38130 + protein coding gene secreted frizzled-related protein 1
Tssr76636 8 23411927 to 23411941 14 + TSS region transcription start site region 76636
Tssr76637 8 23446572 to 23446581 9 + TSS region transcription start site region 76637
Tssr76638 8 23446702 to 23446717 15 + TSS region transcription start site region 76638
Tssr76639 8 23446751 to 23446754 3 + TSS region transcription start site region 76639
Tssr76640 8 23446869 to 23446881 12 + TSS region transcription start site region 76640
Tssr76641 8 23446889 to 23446909 20 + TSS region transcription start site region 76641
Tssr76642 8 23446912 to 23446932 20 + TSS region transcription start site region 76642
Tssr76643 8 23446942 to 23446969 27 + TSS region transcription start site region 76643
Tssr76644 8 23446973 to 23446993 20 + TSS region transcription start site region 76644
Tssr76645 8 23448521 to 23448523 2 + TSS region transcription start site region 76645
4930413E20Rik 8 23534472 to 23535739 1267 + lncRNA gene RIKEN cDNA 4930413E20 gene
Tssr76646 8 23535193 to 23535202 9 + TSS region transcription start site region 76646
D8Dcr6 8 23590956 to 23591051 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 6
Cpgi20169 8 23629977 to 23630216 239 CpG island CpG island 20169
Cpgi20170 8 23633867 to 23634046 179 CpG island CpG island 20170
Gm30471 8 23635080 to 23648505 13425 - lncRNA gene predicted gene, 30471
Zmat4 8 23647388 to 24063117 415729 + protein coding gene zinc finger, matrin type 4
Tssr80635 8 23648516 to 23648544 28 - TSS region transcription start site region 80635
Cpgi20171 8 23669514 to 23669860 346 CpG island CpG island 20171
Tssr76647 8 23669653 to 23669671 18 + TSS region transcription start site region 76647
Gm45165 8 23696005 to 23697635 1630 + unclassified gene predicted gene 45165