Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:23143140-25863144

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370 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ank1 8 22974844 to 23150497 175653 + protein coding gene ankyrin 1, erythroid
Gm15816 8 23138794 to 23149585 10791 - antisense lncRNA gene predicted gene 15816
Tssr76624 8 23143248 to 23143269 21 + TSS region transcription start site region 76624
Tssr76625 8 23148589 to 23148615 26 + TSS region transcription start site region 76625
Cpgi20163 8 23149480 to 23150308 828 CpG island CpG island 20163
Tssr76626 8 23153263 to 23153276 13 + TSS region transcription start site region 76626
Nkx6-3 8 23153271 to 23158948 5677 + protein coding gene NK6 homeobox 3
Tssr76627 8 23153294 to 23153305 11 + TSS region transcription start site region 76627
Tssr76628 8 23153427 to 23153436 9 + TSS region transcription start site region 76628
Cpgi20164 8 23157274 to 23158086 812 CpG island CpG island 20164
Tssr80619 8 23162961 to 23162972 11 - TSS region transcription start site region 80619
Gm30306 8 23164726 to 23169554 4828 - lncRNA gene predicted gene, 30306
Tssr80620 8 23165944 to 23165950 6 - TSS region transcription start site region 80620
Gm30247 8 23167760 to 23171183 3423 + lncRNA gene predicted gene, 30247
Tssr76629 8 23167777 to 23167824 47 + TSS region transcription start site region 76629
Gpat4 8 23171265 to 23208346 37081 - protein coding gene glycerol-3-phosphate acyltransferase 4
Tssr80621 8 23181420 to 23181423 3 - TSS region transcription start site region 80621
Tssr80622 8 23191047 to 23191058 11 - TSS region transcription start site region 80622
Tssr80623 8 23191178 to 23191198 20 - TSS region transcription start site region 80623
Tssr80624 8 23191570 to 23191580 10 - TSS region transcription start site region 80624
Tssr80625 8 23191584 to 23191598 14 - TSS region transcription start site region 80625
Tssr80626 8 23193526 to 23193531 5 - TSS region transcription start site region 80626
Cpgi20165 8 23207627 to 23209014 1387 CpG island CpG island 20165
Tssr80627 8 23208319 to 23208356 37 - TSS region transcription start site region 80627
Tssr80628 8 23208361 to 23208404 43 - TSS region transcription start site region 80628
Tssr80629 8 23208407 to 23208412 5 - TSS region transcription start site region 80629
B230112G18Rik 8 23208512 to 23209362 850 + unclassified gene RIKEN cDNA B230112G18 gene
Tssr80630 8 23209021 to 23209030 9 - TSS region transcription start site region 80630
Gins4 8 23226616 to 23237659 11043 - protein coding gene GINS complex subunit 4 (Sld5 homolog)
Tssr80631 8 23231540 to 23231545 5 - TSS region transcription start site region 80631
Tssr76630 8 23237019 to 23237020 1 + TSS region transcription start site region 76630
Cpgi20166 8 23237209 to 23238029 820 CpG island CpG island 20166
Tssr80632 8 23237623 to 23237681 58 - TSS region transcription start site region 80632
Golga7 8 23241346 to 23257074 15728 - protein coding gene golgi autoantigen, golgin subfamily a, 7
Gm39141 8 23250409 to 23252984 2575 + lncRNA gene predicted gene, 39141
Cpgi20167 8 23256485 to 23257420 935 CpG island CpG island 20167
4930518F22Rik 8 23256634 to 23258908 2274 unclassified gene RIKEN cDNA 4930518F22 gene
Gm45412 8 23256635 to 23258909 2274 + unclassified gene predicted gene 45412
Tssr80633 8 23257009 to 23257031 22 - TSS region transcription start site region 80633
Tssr80634 8 23257043 to 23257086 43 - TSS region transcription start site region 80634
D8Mit171 8 23263652 to 23263799 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 171
Pnhdlc3 8 23263799 to 7162499 -16101300 QTL plasma non-HDL cholesterol 3
Tssr76631 8 23272548 to 23272574 26 + TSS region transcription start site region 76631
Gm24335 8 23290033 to 23290164 131 - snoRNA gene predicted gene, 24335
Tssr76632 8 23314689 to 23314691 2 + TSS region transcription start site region 76632
Gm30370 8 23387121 to 23404313 17192 - lncRNA gene predicted gene, 30370
Cpgi20168 8 23411047 to 23412507 1460 CpG island CpG island 20168
Tssr76633 8 23411246 to 23411270 24 + TSS region transcription start site region 76633
Tssr76634 8 23411272 to 23411300 28 + TSS region transcription start site region 76634
Tssr76635 8 23411490 to 23411507 17 + TSS region transcription start site region 76635
Sfrp1 8 23411502 to 23449632 38130 + protein coding gene secreted frizzled-related protein 1
Tssr76636 8 23411927 to 23411941 14 + TSS region transcription start site region 76636
Tssr76637 8 23446572 to 23446581 9 + TSS region transcription start site region 76637
Tssr76638 8 23446702 to 23446717 15 + TSS region transcription start site region 76638
Tssr76639 8 23446751 to 23446754 3 + TSS region transcription start site region 76639
Tssr76640 8 23446869 to 23446881 12 + TSS region transcription start site region 76640
Tssr76641 8 23446889 to 23446909 20 + TSS region transcription start site region 76641
Tssr76642 8 23446912 to 23446932 20 + TSS region transcription start site region 76642
Tssr76643 8 23446942 to 23446969 27 + TSS region transcription start site region 76643
Tssr76644 8 23446973 to 23446993 20 + TSS region transcription start site region 76644
Tssr76645 8 23448521 to 23448523 2 + TSS region transcription start site region 76645
4930413E20Rik 8 23534472 to 23535739 1267 + lncRNA gene RIKEN cDNA 4930413E20 gene
Tssr76646 8 23535193 to 23535202 9 + TSS region transcription start site region 76646
D8Dcr6 8 23590956 to 23591051 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 6
Cpgi20169 8 23629977 to 23630216 239 CpG island CpG island 20169
Cpgi20170 8 23633867 to 23634046 179 CpG island CpG island 20170
Gm30471 8 23635080 to 23648505 13425 - lncRNA gene predicted gene, 30471
Zmat4 8 23647388 to 24063117 415729 + protein coding gene zinc finger, matrin type 4
Tssr80635 8 23648516 to 23648544 28 - TSS region transcription start site region 80635
Cpgi20171 8 23669514 to 23669860 346 CpG island CpG island 20171
Tssr76647 8 23669653 to 23669671 18 + TSS region transcription start site region 76647
Gm45165 8 23696005 to 23697635 1630 + unclassified gene predicted gene 45165
Gm45166 8 23752083 to 23752765 682 - unclassified gene predicted gene 45166
Tssr76648 8 23776584 to 23776608 24 + TSS region transcription start site region 76648
D8Mit143 8 23845507 to 23845785 278 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 143
D8Mit222 8 24007500 to 24007638 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 222
D8Mit23 8 24020007 to 24020260 253 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 23
Tssr76649 8 24044474 to 24044488 14 + TSS region transcription start site region 76649
Tssr76650 8 24044518 to 24044536 18 + TSS region transcription start site region 76650
A730045E13Rik 8 24173904 to 24185568 11664 + lincRNA gene RIKEN cDNA A730045E13 gene
Cpgi20172 8 24180797 to 24180964 167 CpG island CpG island 20172
Gm45163 8 24220510 to 24230146 9636 + lincRNA gene predicted gene 45163
Gm45164 8 24353944 to 24359436 5492 - lincRNA gene predicted gene 45164
Gm30633 8 24382131 to 24391067 8936 + lncRNA gene predicted gene, 30633
Tssr76651 8 24395791 to 24395794 3 + TSS region transcription start site region 76651
Tssr2517 8 24399222 to 24399226 4 + TSS region transcription start site region 2517
Gm30692 8 24412331 to 24416936 4605 + lincRNA gene predicted gene, 30692
Tssr76652 8 24413094 to 24413101 7 + TSS region transcription start site region 76652
Tssr76653 8 24419599 to 24419600 1 + TSS region transcription start site region 76653
Gm26714 8 24422404 to 24440008 17604 + antisense lncRNA gene predicted gene, 26714
Gm30757 8 24429438 to 24431124 1686 - lncRNA gene predicted gene, 30757
Tcim 8 24437616 to 24438946 1330 - protein coding gene transcriptional and immune response regulator
Tssr80636 8 24438937 to 24438952 15 - TSS region transcription start site region 80636
Gm30845 8 24440880 to 24447864 6984 - lncRNA gene predicted gene, 30845
Gm44620 8 24447097 to 24449983 2886 + unclassified gene predicted gene 44620
Tssr76654 8 24480062 to 24480108 46 + TSS region transcription start site region 76654
D8Mit95 8 24494173 to 24494326 153 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 95
Ap8q 8 24494173 to 24494326 153 QTL alcohol preference 8 QTL
Tssr76655 8 24503086 to 24503087 1 + TSS region transcription start site region 76655
Tssr76656 8 24503093 to 24503106 13 + TSS region transcription start site region 76656
Tssr76657 8 24503140 to 24503144 4 + TSS region transcription start site region 76657
9130214F15Rik 8 24506430 to 24508082 1652 + lncRNA gene RIKEN cDNA 9130214F15 gene
Ido2 8 24531892 to 24576333 44441 - protein coding gene indoleamine 2,3-dioxygenase 2
Tssr80637 8 24554320 to 24554334 14 - TSS region transcription start site region 80637
Tssr80638 8 24571210 to 24571218 8 - TSS region transcription start site region 80638
Tssr80639 8 24576276 to 24576283 7 - TSS region transcription start site region 80639
Tssr80640 8 24576297 to 24576368 71 - TSS region transcription start site region 80640
Ido1 8 24584133 to 24596952 12819 - protein coding gene indoleamine 2,3-dioxygenase 1
Tssr80641 8 24585350 to 24585374 24 - TSS region transcription start site region 80641
Cpgi20173 8 24595515 to 24595965 450 CpG island CpG island 20173
Tssr80642 8 24595602 to 24595610 8 - TSS region transcription start site region 80642
Tssr80643 8 24595611 to 24595617 6 - TSS region transcription start site region 80643
Tssr80644 8 24595634 to 24595671 37 - TSS region transcription start site region 80644
Tssr76658 8 24595777 to 24595782 5 + TSS region transcription start site region 76658
Tssr80645 8 24596960 to 24596976 16 - TSS region transcription start site region 80645
Adam18 8 24602246 to 24674755 72509 - protein coding gene a disintegrin and metallopeptidase domain 18
Cypr7 8 24613185 to 24613356 171 QTL cytokine production 7
D8Mit3 8 24613185 to 24613356 171 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 3
Eae24 8 24613185 to 24613356 171 QTL experimental allergic encephalomyelitis susceptibility 24
Sluc20 8 24613185 to 24613356 171 QTL susceptibility to lung cancer 20
Cpgi20174 8 24674618 to 24674874 256 CpG island CpG island 20174
Tssr80646 8 24674707 to 24674740 33 - TSS region transcription start site region 80646
Tssr80647 8 24674751 to 24674759 8 - TSS region transcription start site region 80647
Adam3 8 24677225 to 24725852 48627 - protein coding gene a disintegrin and metallopeptidase domain 3 (cyritestin)
Gm26208 8 24680814 to 24680937 123 + snoRNA gene predicted gene, 26208
Gm45528 8 24711406 to 24714550 3144 + unclassified gene predicted gene 45528
Tssr2518 8 24725741 to 24725748 7 - TSS region transcription start site region 2518
Tssr80648 8 24725762 to 24725818 56 - TSS region transcription start site region 80648
Tssr2519 8 24725840 to 24725861 21 - TSS region transcription start site region 2519
Tssr76659 8 24725968 to 24725999 31 + TSS region transcription start site region 76659
Tssr80649 8 24726019 to 24726030 11 - TSS region transcription start site region 80649
Adam5 8 24727093 to 24824369 97276 - protein coding gene a disintegrin and metallopeptidase domain 5
Tssr80650 8 24746762 to 24746776 14 - TSS region transcription start site region 80650
Tssr2520 8 24779521 to 24779522 1 + TSS region transcription start site region 2520
Tssr80651 8 24814095 to 24814104 9 - TSS region transcription start site region 80651
Tssr80652 8 24814118 to 24814126 8 - TSS region transcription start site region 80652
Tssr80653 8 24818527 to 24818536 9 - TSS region transcription start site region 80653
Tssr80654 8 24818547 to 24818556 9 - TSS region transcription start site region 80654
Tssr76660 8 24818969 to 24818971 2 + TSS region transcription start site region 76660
Tssr2521 8 24823974 to 24823978 4 - TSS region transcription start site region 2521
Tssr2522 8 24823979 to 24823986 7 - TSS region transcription start site region 2522
Tssr80655 8 24824016 to 24824045 29 - TSS region transcription start site region 80655
Tssr80656 8 24824049 to 24824059 10 - TSS region transcription start site region 80656
Adam32 8 24836140 to 24948804 112664 - protein coding gene a disintegrin and metallopeptidase domain 32
Tssr80657 8 24903368 to 24903373 5 - TSS region transcription start site region 80657
Gm23898 8 24938300 to 24938402 102 + snRNA gene predicted gene, 23898
Cpgi20175 8 24948691 to 24948901 210 CpG island CpG island 20175
Tssr80658 8 24948771 to 24948829 58 - TSS region transcription start site region 80658
Adam9 8 24949611 to 25016927 67316 - protein coding gene a disintegrin and metallopeptidase domain 9 (meltrin gamma)
Tssr80659 8 24950840 to 24950844 4 - TSS region transcription start site region 80659
Tssr80660 8 24955229 to 24955235 6 - TSS region transcription start site region 80660
Tssr80661 8 25007961 to 25007965 4 - TSS region transcription start site region 80661
Tssr80662 8 25012617 to 25012622 5 - TSS region transcription start site region 80662
Tssr76661 8 25015098 to 25015112 14 + TSS region transcription start site region 76661
Tssr80663 8 25016323 to 25016335 12 - TSS region transcription start site region 80663
Cpgi20176 8 25016369 to 25017794 1425 CpG island CpG island 20176
Tssr80664 8 25016743 to 25016877 134 - TSS region transcription start site region 80664
Tssr80665 8 25016901 to 25016924 23 - TSS region transcription start site region 80665
Tssr80666 8 25017035 to 25017053 18 - TSS region transcription start site region 80666
Tm2d2 8 25017211 to 25023260 6049 + protein coding gene TM2 domain containing 2
Tssr76662 8 25017252 to 25017305 53 + TSS region transcription start site region 76662
Tssr76663 8 25017306 to 25017320 14 + TSS region transcription start site region 76663
Tssr76664 8 25017325 to 25017347 22 + TSS region transcription start site region 76664
Htra4 8 25024929 to 25038962 14033 - protein coding gene HtrA serine peptidase 4
Tssr80667 8 25029704 to 25029742 38 - TSS region transcription start site region 80667
Gm16933 8 25037052 to 25041892 4840 + lincRNA gene predicted gene, 16933
Cpgi20177 8 25037918 to 25039128 1210 CpG island CpG island 20177
Tssr80668 8 25038875 to 25038921 46 - TSS region transcription start site region 80668
Tssr80669 8 25038956 to 25038974 18 - TSS region transcription start site region 80669
Plekha2 8 25039144 to 25102376 63232 - protein coding gene pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
Tssr80670 8 25052842 to 25052848 6 - TSS region transcription start site region 80670
Tssr80671 8 25054871 to 25054884 13 - TSS region transcription start site region 80671
Tssr80672 8 25067921 to 25067935 14 - TSS region transcription start site region 80672
Tssr2523 8 25068146 to 25068159 13 + TSS region transcription start site region 2523
Cpgi20178 8 25068162 to 25068420 258 CpG island CpG island 20178
Tssr76665 8 25068459 to 25068470 11 + TSS region transcription start site region 76665
Tssr76666 8 25068488 to 25068496 8 + TSS region transcription start site region 76666
Tssr76667 8 25068581 to 25068616 35 + TSS region transcription start site region 76667
Tssr80673 8 25087533 to 25087538 5 - TSS region transcription start site region 80673
Tssr80674 8 25088514 to 25088545 31 - TSS region transcription start site region 80674
Tssr80675 8 25091341 to 25091351 10 - TSS region transcription start site region 80675
Tssr80676 8 25091364 to 25091372 8 - TSS region transcription start site region 80676
Tssr76668 8 25101072 to 25101104 32 + TSS region transcription start site region 76668
5830408C22Rik 8 25101216 to 25109986 8770 + unclassified non-coding RNA gene RIKEN cDNA 5830408C22 gene
Cpgi20179 8 25101548 to 25103172 1624 CpG island CpG island 20179
Tssr80677 8 25101599 to 25101608 9 - TSS region transcription start site region 80677
Tssr2524 8 25101606 to 25101627 21 + TSS region transcription start site region 2524
Tssr80678 8 25101702 to 25101713 11 - TSS region transcription start site region 80678
Tssr80679 8 25101734 to 25101792 58 - TSS region transcription start site region 80679
Tssr76669 8 25101870 to 25101886 16 + TSS region transcription start site region 76669
Tssr76670 8 25101914 to 25101953 39 + TSS region transcription start site region 76670
Tssr80680 8 25102107 to 25102169 62 - TSS region transcription start site region 80680
Tssr80681 8 25102179 to 25102194 15 - TSS region transcription start site region 80681
Tssr80682 8 25102369 to 25102388 19 - TSS region transcription start site region 80682
Tssr80683 8 25102543 to 25102570 27 - TSS region transcription start site region 80683
Tssr80684 8 25103014 to 25103030 16 - TSS region transcription start site region 80684
Tssr76671 8 25103485 to 25103489 4 + TSS region transcription start site region 76671
Gm45745 8 25103489 to 25104668 1179 - unclassified gene predicted gene 45745
Tssr80685 8 25104661 to 25104689 28 - TSS region transcription start site region 80685
Tssr80686 8 25104700 to 25104709 9 - TSS region transcription start site region 80686