Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:22424848-22809586

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrps31 8 22411361 to 22429665 18304 + protein coding gene mitochondrial ribosomal protein S31
Gm39140 8 22453132 to 22454753 1621 - lncRNA gene predicted gene, 39140
Smim19 8 22462614 to 22476879 14265 - protein coding gene small integral membrane protein 19
Tssr80593 8 22463217 to 22463229 12 - TSS region transcription start site region 80593
Cpgi20152 8 22476132 to 22477486 1354 CpG island CpG island 20152
Tssr80594 8 22476623 to 22476686 63 - TSS region transcription start site region 80594
Tssr76577 8 22476720 to 22476734 14 + TSS region transcription start site region 76577
Tssr76578 8 22476735 to 22476778 43 + TSS region transcription start site region 76578
Slc20a2 8 22476788 to 22569612 92824 + protein coding gene solute carrier family 20, member 2
Tssr80595 8 22476809 to 22476873 64 - TSS region transcription start site region 80595
Tssr76579 8 22476873 to 22476909 36 + TSS region transcription start site region 76579
Gm17491 8 22480291 to 22483332 3041 + sense intronic lncRNA gene predicted gene, 17491
Tssr2513 8 22506217 to 22506231 14 + TSS region transcription start site region 2513
Tssr76580 8 22506407 to 22506449 42 + TSS region transcription start site region 76580
Tssr76581 8 22506463 to 22506487 24 + TSS region transcription start site region 76581
Tssr76582 8 22506493 to 22506509 16 + TSS region transcription start site region 76582
Tssr76583 8 22506518 to 22506540 22 + TSS region transcription start site region 76583
Tssr76584 8 22506554 to 22506571 17 + TSS region transcription start site region 76584
Tssr76585 8 22506572 to 22506591 19 + TSS region transcription start site region 76585
Tssr76586 8 22564080 to 22564116 36 + TSS region transcription start site region 76586
Vdac3 8 22577075 to 22593813 16738 - protein coding gene voltage-dependent anion channel 3
Tssr80596 8 22586095 to 22586099 4 - TSS region transcription start site region 80596
Cpgi20153 8 22593184 to 22594202 1018 CpG island CpG island 20153
Tssr80597 8 22593722 to 22593733 11 - TSS region transcription start site region 80597
Tssr80598 8 22593735 to 22593776 41 - TSS region transcription start site region 80598
Tssr80599 8 22593817 to 22593828 11 - TSS region transcription start site region 80599
Tssr76587 8 22593832 to 22593855 23 + TSS region transcription start site region 76587
Tssr80600 8 22593963 to 22593981 18 - TSS region transcription start site region 80600
Gm30086 8 22594063 to 22611124 17061 + lncRNA gene predicted gene, 30086
1700058M10Rik 8 22609080 to 22609422 342 unclassified gene RIKEN cDNA 1700058M10 gene
Gm30135 8 22614848 to 22619586 4738 + lncRNA gene predicted gene, 30135
Tssr76588 8 22624019 to 22624023 4 + TSS region transcription start site region 76588
Dkk4 8 22624043 to 22627547 3504 + protein coding gene dickkopf WNT signaling pathway inhibitor 4
Tssr2514 8 22625520 to 22625523 3 + TSS region transcription start site region 2514
Polb 8 22628126 to 22653435 25309 - protein coding gene polymerase (DNA directed), beta
Tssr80601 8 22633195 to 22633258 63 - TSS region transcription start site region 80601
Tssr80602 8 22633267 to 22633285 18 - TSS region transcription start site region 80602
Tssr80603 8 22633377 to 22633408 31 - TSS region transcription start site region 80603
A930013F10Rik 8 22634371 to 22636809 2438 - lncRNA gene RIKEN cDNA A930013F10 gene
Gm26909 8 22644861 to 22646286 1425 + lincRNA gene predicted gene, 26909
D8Mit16 8 22652234 to 22652541 307 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 16
Cpgi20154 8 22653011 to 22653850 839 CpG island CpG island 20154
Tssr80604 8 22653394 to 22653405 11 - TSS region transcription start site region 80604
Tssr80605 8 22653406 to 22653458 52 - TSS region transcription start site region 80605
Ikbkb 8 22659212 to 22706589 47377 - protein coding gene inhibitor of kappaB kinase beta
Tssr80606 8 22671655 to 22671679 24 - TSS region transcription start site region 80606
Gm15346 8 22686265 to 22695646 9381 + antisense lncRNA gene predicted gene 15346
Tssr80607 8 22694061 to 22694081 20 - TSS region transcription start site region 80607
Tssr80608 8 22701530 to 22701579 49 - TSS region transcription start site region 80608
Cpgi20155 8 22705988 to 22706780 792 CpG island CpG island 20155
Tssr80609 8 22706507 to 22706580 73 - TSS region transcription start site region 80609
Tssr76589 8 22706626 to 22706632 6 + TSS region transcription start site region 76589
Tssr76590 8 22757726 to 22757729 3 + TSS region transcription start site region 76590
Plat 8 22757727 to 22782844 25117 + protein coding gene plasminogen activator, tissue
Tssr76591 8 22757745 to 22757761 16 + TSS region transcription start site region 76591
Tssr80610 8 22783444 to 22783447 3 - TSS region transcription start site region 80610
Ap3m2 8 22787354 to 22805622 18268 - protein coding gene adaptor-related protein complex 3, mu 2 subunit
D8Dcr5 8 22802019 to 22802114 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 5
Tssr80611 8 22803883 to 22803892 9 - TSS region transcription start site region 80611
Cpgi20156 8 22805307 to 22805903 596 CpG island CpG island 20156
Tssr80612 8 22805596 to 22805649 53 - TSS region transcription start site region 80612
1700041G16Rik 8 22805766 to 22809537 3771 + lincRNA gene RIKEN cDNA 1700041G16 gene
Cpgi20157 8 22807857 to 22808592 735 CpG island CpG island 20157