Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:22132576-22672752

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nek3 8 22128283 to 22166435 38152 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 3
Cpgi20144 8 22166055 to 22166791 736 CpG island CpG island 20144
Tssr80581 8 22166413 to 22166435 22 - TSS region transcription start site region 80581
Ckap2 8 22168160 to 22185819 17659 - protein coding gene cytoskeleton associated protein 2
Cpgi20145 8 22185410 to 22186185 775 CpG island CpG island 20145
Tssr80582 8 22185485 to 22185520 35 - TSS region transcription start site region 80582
Tssr80583 8 22185758 to 22185817 59 - TSS region transcription start site region 80583
Tssr80584 8 22185821 to 22185840 19 - TSS region transcription start site region 80584
Gm29878 8 22185915 to 22187152 1237 + lncRNA gene predicted gene, 29878
Tssr76567 8 22186064 to 22186076 12 + TSS region transcription start site region 76567
Tssr80585 8 22186969 to 22186980 11 - TSS region transcription start site region 80585
Cpgi20146 8 22192666 to 22193559 893 CpG island CpG island 20146
Tssr76568 8 22192788 to 22192797 9 + TSS region transcription start site region 76568
Tssr76569 8 22192800 to 22192856 56 + TSS region transcription start site region 76569
Tssr76570 8 22192858 to 22192869 11 + TSS region transcription start site region 76570
Vps36 8 22192860 to 22218597 25737 + protein coding gene vacuolar protein sorting 36
Tssr76571 8 22216972 to 22216988 16 + TSS region transcription start site region 76571
Cpgi20147 8 22227049 to 22227592 543 CpG island CpG island 20147
Tssr76572 8 22227292 to 22227320 28 + TSS region transcription start site region 76572
Thsd1 8 22227313 to 22261334 34021 + protein coding gene thrombospondin, type I, domain 1
Tssr76573 8 22227322 to 22227357 35 + TSS region transcription start site region 76573
Rpl30-ps2 8 22230902 to 22231192 290 - pseudogene ribosomal protein L30, pseudogene 2
Cpgi20148 8 22258378 to 22258660 282 CpG island CpG island 20148
Tpte 8 22283441 to 22371418 87977 + protein coding gene transmembrane phosphatase with tensin homology
Gm46035 8 22307086 to 22307416 330 + pseudogene predicted gene, 46035
D8Mit257 8 22316647 to 22316757 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 257
Tssr2512 8 22340019 to 22340021 2 + TSS region transcription start site region 2512
Slc25a15 8 22375551 to 22398597 23046 - protein coding gene solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
Tssr80586 8 22396232 to 22396248 16 - TSS region transcription start site region 80586
Cpgi20149 8 22397910 to 22399014 1104 CpG island CpG island 20149
Tssr80587 8 22398260 to 22398276 16 - TSS region transcription start site region 80587
Tssr80588 8 22398349 to 22398361 12 - TSS region transcription start site region 80588
Tssr80589 8 22398470 to 22398471 1 - TSS region transcription start site region 80589
Tssr80590 8 22398483 to 22398497 14 - TSS region transcription start site region 80590
Tssr80591 8 22398588 to 22398612 24 - TSS region transcription start site region 80591
1810012K16Rik 8 22398721 to 22399591 870 + lincRNA gene RIKEN cDNA 1810012K16 gene
Gm45452 8 22402576 to 22402752 176 - pseudogene predicted gene 45452
Tssr76574 8 22405244 to 22405245 1 + TSS region transcription start site region 76574
Tssr76575 8 22407449 to 22407486 37 + TSS region transcription start site region 76575
Gm6009 8 22407542 to 22407821 279 + pseudogene predicted gene 6009
Cpgi20150 8 22408255 to 22408440 185 CpG island CpG island 20150
Gm45453 8 22410457 to 22411309 852 + unclassified gene predicted gene 45453
Cpgi20151 8 22411087 to 22411829 742 CpG island CpG island 20151
Tssr80592 8 22411288 to 22411313 25 - TSS region transcription start site region 80592
Mrps31 8 22411361 to 22429665 18304 + protein coding gene mitochondrial ribosomal protein S31
Tssr76576 8 22411378 to 22411460 82 + TSS region transcription start site region 76576
Gm39140 8 22453132 to 22454753 1621 - lncRNA gene predicted gene, 39140
Smim19 8 22462614 to 22476879 14265 - protein coding gene small integral membrane protein 19
Tssr80593 8 22463217 to 22463229 12 - TSS region transcription start site region 80593
Cpgi20152 8 22476132 to 22477486 1354 CpG island CpG island 20152
Tssr80594 8 22476623 to 22476686 63 - TSS region transcription start site region 80594
Tssr76577 8 22476720 to 22476734 14 + TSS region transcription start site region 76577
Tssr76578 8 22476735 to 22476778 43 + TSS region transcription start site region 76578
Slc20a2 8 22476788 to 22569612 92824 + protein coding gene solute carrier family 20, member 2
Tssr80595 8 22476809 to 22476873 64 - TSS region transcription start site region 80595
Tssr76579 8 22476873 to 22476909 36 + TSS region transcription start site region 76579
Gm17491 8 22480291 to 22483332 3041 + sense intronic lncRNA gene predicted gene, 17491
Tssr2513 8 22506217 to 22506231 14 + TSS region transcription start site region 2513
Tssr76580 8 22506407 to 22506449 42 + TSS region transcription start site region 76580
Tssr76581 8 22506463 to 22506487 24 + TSS region transcription start site region 76581
Tssr76582 8 22506493 to 22506509 16 + TSS region transcription start site region 76582
Tssr76583 8 22506518 to 22506540 22 + TSS region transcription start site region 76583
Tssr76584 8 22506554 to 22506571 17 + TSS region transcription start site region 76584
Tssr76585 8 22506572 to 22506591 19 + TSS region transcription start site region 76585
Tssr76586 8 22564080 to 22564116 36 + TSS region transcription start site region 76586
Vdac3 8 22577075 to 22593813 16738 - protein coding gene voltage-dependent anion channel 3
Tssr80596 8 22586095 to 22586099 4 - TSS region transcription start site region 80596
Cpgi20153 8 22593184 to 22594202 1018 CpG island CpG island 20153
Tssr80597 8 22593722 to 22593733 11 - TSS region transcription start site region 80597
Tssr80598 8 22593735 to 22593776 41 - TSS region transcription start site region 80598
Tssr80599 8 22593817 to 22593828 11 - TSS region transcription start site region 80599
Tssr76587 8 22593832 to 22593855 23 + TSS region transcription start site region 76587
Tssr80600 8 22593963 to 22593981 18 - TSS region transcription start site region 80600
Gm30086 8 22594063 to 22611124 17061 + lncRNA gene predicted gene, 30086
1700058M10Rik 8 22609080 to 22609422 342 unclassified gene RIKEN cDNA 1700058M10 gene
Gm30135 8 22614848 to 22619586 4738 + lncRNA gene predicted gene, 30135
Tssr76588 8 22624019 to 22624023 4 + TSS region transcription start site region 76588
Dkk4 8 22624043 to 22627547 3504 + protein coding gene dickkopf WNT signaling pathway inhibitor 4
Tssr2514 8 22625520 to 22625523 3 + TSS region transcription start site region 2514
Polb 8 22628126 to 22653435 25309 - protein coding gene polymerase (DNA directed), beta
Tssr80601 8 22633195 to 22633258 63 - TSS region transcription start site region 80601
Tssr80602 8 22633267 to 22633285 18 - TSS region transcription start site region 80602
Tssr80603 8 22633377 to 22633408 31 - TSS region transcription start site region 80603
A930013F10Rik 8 22634371 to 22636809 2438 - lncRNA gene RIKEN cDNA A930013F10 gene
Gm26909 8 22644861 to 22646286 1425 + lincRNA gene predicted gene, 26909
D8Mit16 8 22652234 to 22652541 307 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 16
Cpgi20154 8 22653011 to 22653850 839 CpG island CpG island 20154
Tssr80604 8 22653394 to 22653405 11 - TSS region transcription start site region 80604
Tssr80605 8 22653406 to 22653458 52 - TSS region transcription start site region 80605
Ikbkb 8 22659212 to 22706589 47377 - protein coding gene inhibitor of kappaB kinase beta
Tssr80606 8 22671655 to 22671679 24 - TSS region transcription start site region 80606