Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:21957858-22427869

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29821 8 21947674 to 21969608 21934 - lncRNA gene predicted gene, 29821
Fam90a1a 8 21958714 to 21964303 5589 + protein coding gene family with sequence similarity 90, member A1A
Tssr76562 8 21969769 to 21969780 11 + TSS region transcription start site region 76562
Ccdc70 8 21969775 to 21974041 4266 + protein coding gene coiled-coil domain containing 70
Tssr76563 8 21969828 to 21969833 5 + TSS region transcription start site region 76563
Tssr80572 8 21970422 to 21970467 45 - TSS region transcription start site region 80572
Tssr76564 8 21970570 to 21970575 5 + TSS region transcription start site region 76564
Tssr76565 8 21970590 to 21970608 18 + TSS region transcription start site region 76565
D8Dcr4 8 21981229 to 21981326 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 4
Atp7b 8 21992783 to 22060074 67291 - protein coding gene ATPase, Cu++ transporting, beta polypeptide
Tssr80573 8 21993405 to 21993410 5 - TSS region transcription start site region 80573
Tssr80574 8 22006583 to 22006584 1 - TSS region transcription start site region 80574
Tssr80575 8 22039582 to 22039585 3 - TSS region transcription start site region 80575
Tssr80576 8 22039607 to 22039625 18 - TSS region transcription start site region 80576
Tssr80577 8 22039628 to 22039649 21 - TSS region transcription start site region 80577
Cpgi20142 8 22059845 to 22060989 1144 CpG island CpG island 20142
Tssr80578 8 22060019 to 22060056 37 - TSS region transcription start site region 80578
Tssr80579 8 22060310 to 22060336 26 - TSS region transcription start site region 80579
Tssr76566 8 22060712 to 22060732 20 + TSS region transcription start site region 76566
Alg11 8 22060721 to 22071627 10906 + protein coding gene asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
Nek5 8 22073616 to 22125053 51437 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 5
Cpgi20143 8 22124789 to 22125163 374 CpG island CpG island 20143
Tssr80580 8 22125030 to 22125073 43 - TSS region transcription start site region 80580
Nek3 8 22128283 to 22166435 38152 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 3
Cpgi20144 8 22166055 to 22166791 736 CpG island CpG island 20144
Tssr80581 8 22166413 to 22166435 22 - TSS region transcription start site region 80581
Ckap2 8 22168160 to 22185819 17659 - protein coding gene cytoskeleton associated protein 2
Cpgi20145 8 22185410 to 22186185 775 CpG island CpG island 20145
Tssr80582 8 22185485 to 22185520 35 - TSS region transcription start site region 80582
Tssr80583 8 22185758 to 22185817 59 - TSS region transcription start site region 80583
Tssr80584 8 22185821 to 22185840 19 - TSS region transcription start site region 80584
Gm29878 8 22185915 to 22187152 1237 + lncRNA gene predicted gene, 29878
Tssr76567 8 22186064 to 22186076 12 + TSS region transcription start site region 76567
Tssr80585 8 22186969 to 22186980 11 - TSS region transcription start site region 80585
Cpgi20146 8 22192666 to 22193559 893 CpG island CpG island 20146
Tssr76568 8 22192788 to 22192797 9 + TSS region transcription start site region 76568
Tssr76569 8 22192800 to 22192856 56 + TSS region transcription start site region 76569
Tssr76570 8 22192858 to 22192869 11 + TSS region transcription start site region 76570
Vps36 8 22192860 to 22218597 25737 + protein coding gene vacuolar protein sorting 36
Tssr76571 8 22216972 to 22216988 16 + TSS region transcription start site region 76571
Cpgi20147 8 22227049 to 22227592 543 CpG island CpG island 20147
Tssr76572 8 22227292 to 22227320 28 + TSS region transcription start site region 76572
Thsd1 8 22227313 to 22261334 34021 + protein coding gene thrombospondin, type I, domain 1
Tssr76573 8 22227322 to 22227357 35 + TSS region transcription start site region 76573
Rpl30-ps2 8 22230902 to 22231192 290 - pseudogene ribosomal protein L30, pseudogene 2
Cpgi20148 8 22258378 to 22258660 282 CpG island CpG island 20148
Tpte 8 22283441 to 22371418 87977 + protein coding gene transmembrane phosphatase with tensin homology
Gm46035 8 22307086 to 22307416 330 + pseudogene predicted gene, 46035
D8Mit257 8 22316647 to 22316757 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 257
Tssr2512 8 22340019 to 22340021 2 + TSS region transcription start site region 2512
Slc25a15 8 22375551 to 22398597 23046 - protein coding gene solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
Tssr80586 8 22396232 to 22396248 16 - TSS region transcription start site region 80586
Cpgi20149 8 22397910 to 22399014 1104 CpG island CpG island 20149
Tssr80587 8 22398260 to 22398276 16 - TSS region transcription start site region 80587
Tssr80588 8 22398349 to 22398361 12 - TSS region transcription start site region 80588
Tssr80589 8 22398470 to 22398471 1 - TSS region transcription start site region 80589
Tssr80590 8 22398483 to 22398497 14 - TSS region transcription start site region 80590
Tssr80591 8 22398588 to 22398612 24 - TSS region transcription start site region 80591
1810012K16Rik 8 22398721 to 22399591 870 + lincRNA gene RIKEN cDNA 1810012K16 gene
Gm45452 8 22402576 to 22402752 176 - pseudogene predicted gene 45452
Tssr76574 8 22405244 to 22405245 1 + TSS region transcription start site region 76574
Tssr76575 8 22407449 to 22407486 37 + TSS region transcription start site region 76575
Gm6009 8 22407542 to 22407821 279 + pseudogene predicted gene 6009
Cpgi20150 8 22408255 to 22408440 185 CpG island CpG island 20150
Gm45453 8 22410457 to 22411309 852 + unclassified gene predicted gene 45453
Cpgi20151 8 22411087 to 22411829 742 CpG island CpG island 20151
Tssr80592 8 22411288 to 22411313 25 - TSS region transcription start site region 80592
Mrps31 8 22411361 to 22429665 18304 + protein coding gene mitochondrial ribosomal protein S31
Tssr76576 8 22411378 to 22411460 82 + TSS region transcription start site region 76576