Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:21539080-23679422

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304 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm24423 8 21548060 to 21548165 105 - snRNA gene predicted gene, 24423
Tssr76555 8 21565368 to 21565373 5 + TSS region transcription start site region 76555
Defa37 8 21565386 to 21566349 963 + protein coding gene defensin, alpha, 37
Gm15311 8 21576640 to 21577426 786 + pseudogene predicted gene 15311
Defa28 8 21582960 to 21583867 907 + protein coding gene defensin, alpha, 28
Gm15312 8 21592341 to 21592610 269 + pseudogene predicted gene 15312
Gm7861 8 21593487 to 21594465 978 - protein coding gene predicted gene 7861
Gm24829 8 21594038 to 21594129 91 - snoRNA gene predicted gene, 24829
Gm15314 8 21598905 to 21600791 1886 + pseudogene predicted gene 15314
Defa26 8 21618183 to 21618972 789 + protein coding gene defensin, alpha, 26
Gm15313 8 21639071 to 21640378 1307 + pseudogene predicted gene 15313
Defa17 8 21655780 to 21656735 955 + protein coding gene defensin, alpha, 17
Defa34 8 21665797 to 21666732 935 + protein coding gene defensin, alpha, 34
Defa-ps9 8 21688648 to 21689428 780 + pseudogene defensin, alpha, pseudogene 9
Defa-ps1 8 21695012 to 21695853 841 + pseudogene defensin, alpha, pseudogene 1
AY761184 8 21702524 to 21703647 1123 - protein coding gene cDNA sequence AY761184
Tssr80566 8 21702709 to 21702729 20 - TSS region transcription start site region 80566
Gm22447 8 21703175 to 21703266 91 - snoRNA gene predicted gene, 22447
Tssr80567 8 21703642 to 21703649 7 - TSS region transcription start site region 80567
Gm7869 8 21708029 to 21709350 1321 + pseudogene predicted gene 7869
Tssr76556 8 21722024 to 21722025 1 + TSS region transcription start site region 76556
Defa-ps10 8 21722070 to 21722240 170 + pseudogene defensin, alpha, pseudogene 10
Tssr76557 8 21734490 to 21734496 6 + TSS region transcription start site region 76557
Defa24 8 21734494 to 21735471 977 + protein coding gene defensin, alpha, 24
Defa-ps11 8 21749175 to 21750000 825 + pseudogene defensin, alpha, pseudogene 11
Tssr80568 8 21756839 to 21756863 24 - TSS region transcription start site region 80568
Tssr76558 8 21776567 to 21776595 28 + TSS region transcription start site region 76558
Defb1 8 21776599 to 21795185 18586 + protein coding gene defensin beta 1
Gm15316 8 21816964 to 21817384 420 - pseudogene predicted gene 15316
Tssr76559 8 21823533 to 21823548 15 + TSS region transcription start site region 76559
Defb50 8 21823539 to 21831296 7757 + protein coding gene defensin beta 50
Defb2 8 21839926 to 21843482 3556 + protein coding gene defensin beta 2
Defb10 8 21858901 to 21862011 3110 + protein coding gene defensin beta 10
Defb9 8 21881713 to 21885421 3708 - protein coding gene defensin beta 9
Tssr80569 8 21885426 to 21885443 17 - TSS region transcription start site region 80569
Defb11 8 21905376 to 21906412 1036 - protein coding gene defensin beta 11
Tssr80570 8 21906426 to 21906437 11 - TSS region transcription start site region 80570
Gm36879 8 21906664 to 21934313 27649 + antisense lncRNA gene predicted gene, 36879
Defb15 8 21929813 to 21932710 2897 - protein coding gene defensin beta 15
Tssr80571 8 21932708 to 21932716 8 - TSS region transcription start site region 80571
Tssr76560 8 21935310 to 21935319 9 + TSS region transcription start site region 76560
Gm45796 8 21935351 to 21935824 473 + pseudogene predicted gene 45796
Defb35 8 21938352 to 21940878 2526 + protein coding gene defensin beta 35
Tssr76561 8 21946750 to 21946762 12 + TSS region transcription start site region 76561
Defb13 8 21946762 to 21948622 1860 + protein coding gene defensin beta 13
Gm29821 8 21947674 to 21969608 21934 - lncRNA gene predicted gene, 29821
Fam90a1a 8 21958714 to 21964303 5589 + protein coding gene family with sequence similarity 90, member A1A
Tssr76562 8 21969769 to 21969780 11 + TSS region transcription start site region 76562
Ccdc70 8 21969775 to 21974041 4266 + protein coding gene coiled-coil domain containing 70
Tssr76563 8 21969828 to 21969833 5 + TSS region transcription start site region 76563
Tssr80572 8 21970422 to 21970467 45 - TSS region transcription start site region 80572
Tssr76564 8 21970570 to 21970575 5 + TSS region transcription start site region 76564
Tssr76565 8 21970590 to 21970608 18 + TSS region transcription start site region 76565
D8Dcr4 8 21981229 to 21981326 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 4
Atp7b 8 21992783 to 22060074 67291 - protein coding gene ATPase, Cu++ transporting, beta polypeptide
Tssr80573 8 21993405 to 21993410 5 - TSS region transcription start site region 80573
Tssr80574 8 22006583 to 22006584 1 - TSS region transcription start site region 80574
Tssr80575 8 22039582 to 22039585 3 - TSS region transcription start site region 80575
Tssr80576 8 22039607 to 22039625 18 - TSS region transcription start site region 80576
Tssr80577 8 22039628 to 22039649 21 - TSS region transcription start site region 80577
Cpgi20142 8 22059845 to 22060989 1144 CpG island CpG island 20142
Tssr80578 8 22060019 to 22060056 37 - TSS region transcription start site region 80578
Tssr80579 8 22060310 to 22060336 26 - TSS region transcription start site region 80579
Tssr76566 8 22060712 to 22060732 20 + TSS region transcription start site region 76566
Alg11 8 22060721 to 22071627 10906 + protein coding gene asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
Nek5 8 22073616 to 22125053 51437 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 5
Cpgi20143 8 22124789 to 22125163 374 CpG island CpG island 20143
Tssr80580 8 22125030 to 22125073 43 - TSS region transcription start site region 80580
Nek3 8 22128283 to 22166435 38152 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 3
Cpgi20144 8 22166055 to 22166791 736 CpG island CpG island 20144
Tssr80581 8 22166413 to 22166435 22 - TSS region transcription start site region 80581
Ckap2 8 22168160 to 22185819 17659 - protein coding gene cytoskeleton associated protein 2
Cpgi20145 8 22185410 to 22186185 775 CpG island CpG island 20145
Tssr80582 8 22185485 to 22185520 35 - TSS region transcription start site region 80582
Tssr80583 8 22185758 to 22185817 59 - TSS region transcription start site region 80583
Tssr80584 8 22185821 to 22185840 19 - TSS region transcription start site region 80584
Gm29878 8 22185915 to 22187152 1237 + lncRNA gene predicted gene, 29878
Tssr76567 8 22186064 to 22186076 12 + TSS region transcription start site region 76567
Tssr80585 8 22186969 to 22186980 11 - TSS region transcription start site region 80585
Cpgi20146 8 22192666 to 22193559 893 CpG island CpG island 20146
Tssr76568 8 22192788 to 22192797 9 + TSS region transcription start site region 76568
Tssr76569 8 22192800 to 22192856 56 + TSS region transcription start site region 76569
Tssr76570 8 22192858 to 22192869 11 + TSS region transcription start site region 76570
Vps36 8 22192860 to 22218597 25737 + protein coding gene vacuolar protein sorting 36
Tssr76571 8 22216972 to 22216988 16 + TSS region transcription start site region 76571
Cpgi20147 8 22227049 to 22227592 543 CpG island CpG island 20147
Tssr76572 8 22227292 to 22227320 28 + TSS region transcription start site region 76572
Thsd1 8 22227313 to 22261334 34021 + protein coding gene thrombospondin, type I, domain 1
Tssr76573 8 22227322 to 22227357 35 + TSS region transcription start site region 76573
Rpl30-ps2 8 22230902 to 22231192 290 - pseudogene ribosomal protein L30, pseudogene 2
Cpgi20148 8 22258378 to 22258660 282 CpG island CpG island 20148
Tpte 8 22283441 to 22371418 87977 + protein coding gene transmembrane phosphatase with tensin homology
Gm46035 8 22307086 to 22307416 330 + pseudogene predicted gene, 46035
D8Mit257 8 22316647 to 22316757 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 257
Tssr2512 8 22340019 to 22340021 2 + TSS region transcription start site region 2512
Slc25a15 8 22375551 to 22398597 23046 - protein coding gene solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
Tssr80586 8 22396232 to 22396248 16 - TSS region transcription start site region 80586
Cpgi20149 8 22397910 to 22399014 1104 CpG island CpG island 20149
Tssr80587 8 22398260 to 22398276 16 - TSS region transcription start site region 80587
Tssr80588 8 22398349 to 22398361 12 - TSS region transcription start site region 80588
Tssr80589 8 22398470 to 22398471 1 - TSS region transcription start site region 80589
Tssr80590 8 22398483 to 22398497 14 - TSS region transcription start site region 80590
Tssr80591 8 22398588 to 22398612 24 - TSS region transcription start site region 80591
1810012K16Rik 8 22398721 to 22399591 870 + lincRNA gene RIKEN cDNA 1810012K16 gene
Gm45452 8 22402576 to 22402752 176 - pseudogene predicted gene 45452
Tssr76574 8 22405244 to 22405245 1 + TSS region transcription start site region 76574
Tssr76575 8 22407449 to 22407486 37 + TSS region transcription start site region 76575
Gm6009 8 22407542 to 22407821 279 + pseudogene predicted gene 6009
Cpgi20150 8 22408255 to 22408440 185 CpG island CpG island 20150
Gm45453 8 22410457 to 22411309 852 + unclassified gene predicted gene 45453
Cpgi20151 8 22411087 to 22411829 742 CpG island CpG island 20151
Tssr80592 8 22411288 to 22411313 25 - TSS region transcription start site region 80592
Mrps31 8 22411361 to 22429665 18304 + protein coding gene mitochondrial ribosomal protein S31
Tssr76576 8 22411378 to 22411460 82 + TSS region transcription start site region 76576
Gm39140 8 22453132 to 22454753 1621 - lncRNA gene predicted gene, 39140
Smim19 8 22462614 to 22476879 14265 - protein coding gene small integral membrane protein 19
Tssr80593 8 22463217 to 22463229 12 - TSS region transcription start site region 80593
Cpgi20152 8 22476132 to 22477486 1354 CpG island CpG island 20152
Tssr80594 8 22476623 to 22476686 63 - TSS region transcription start site region 80594
Tssr76577 8 22476720 to 22476734 14 + TSS region transcription start site region 76577
Tssr76578 8 22476735 to 22476778 43 + TSS region transcription start site region 76578
Slc20a2 8 22476788 to 22569612 92824 + protein coding gene solute carrier family 20, member 2
Tssr80595 8 22476809 to 22476873 64 - TSS region transcription start site region 80595
Tssr76579 8 22476873 to 22476909 36 + TSS region transcription start site region 76579
Gm17491 8 22480291 to 22483332 3041 + sense intronic lncRNA gene predicted gene, 17491
Tssr2513 8 22506217 to 22506231 14 + TSS region transcription start site region 2513
Tssr76580 8 22506407 to 22506449 42 + TSS region transcription start site region 76580
Tssr76581 8 22506463 to 22506487 24 + TSS region transcription start site region 76581
Tssr76582 8 22506493 to 22506509 16 + TSS region transcription start site region 76582
Tssr76583 8 22506518 to 22506540 22 + TSS region transcription start site region 76583
Tssr76584 8 22506554 to 22506571 17 + TSS region transcription start site region 76584
Tssr76585 8 22506572 to 22506591 19 + TSS region transcription start site region 76585
Tssr76586 8 22564080 to 22564116 36 + TSS region transcription start site region 76586
Vdac3 8 22577075 to 22593813 16738 - protein coding gene voltage-dependent anion channel 3
Tssr80596 8 22586095 to 22586099 4 - TSS region transcription start site region 80596
Cpgi20153 8 22593184 to 22594202 1018 CpG island CpG island 20153
Tssr80597 8 22593722 to 22593733 11 - TSS region transcription start site region 80597
Tssr80598 8 22593735 to 22593776 41 - TSS region transcription start site region 80598
Tssr80599 8 22593817 to 22593828 11 - TSS region transcription start site region 80599
Tssr76587 8 22593832 to 22593855 23 + TSS region transcription start site region 76587
Tssr80600 8 22593963 to 22593981 18 - TSS region transcription start site region 80600
Gm30086 8 22594063 to 22611124 17061 + lncRNA gene predicted gene, 30086
1700058M10Rik 8 22609080 to 22609422 342 unclassified gene RIKEN cDNA 1700058M10 gene
Gm30135 8 22614848 to 22619586 4738 + lncRNA gene predicted gene, 30135
Tssr76588 8 22624019 to 22624023 4 + TSS region transcription start site region 76588
Dkk4 8 22624043 to 22627547 3504 + protein coding gene dickkopf WNT signaling pathway inhibitor 4
Tssr2514 8 22625520 to 22625523 3 + TSS region transcription start site region 2514
Polb 8 22628126 to 22653435 25309 - protein coding gene polymerase (DNA directed), beta
Tssr80601 8 22633195 to 22633258 63 - TSS region transcription start site region 80601
Tssr80602 8 22633267 to 22633285 18 - TSS region transcription start site region 80602
Tssr80603 8 22633377 to 22633408 31 - TSS region transcription start site region 80603
A930013F10Rik 8 22634371 to 22636809 2438 - lncRNA gene RIKEN cDNA A930013F10 gene
Gm26909 8 22644861 to 22646286 1425 + lincRNA gene predicted gene, 26909
D8Mit16 8 22652234 to 22652541 307 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 16
Cpgi20154 8 22653011 to 22653850 839 CpG island CpG island 20154
Tssr80604 8 22653394 to 22653405 11 - TSS region transcription start site region 80604
Tssr80605 8 22653406 to 22653458 52 - TSS region transcription start site region 80605
Ikbkb 8 22659212 to 22706589 47377 - protein coding gene inhibitor of kappaB kinase beta
Tssr80606 8 22671655 to 22671679 24 - TSS region transcription start site region 80606
Gm15346 8 22686265 to 22695646 9381 + antisense lncRNA gene predicted gene 15346
Tssr80607 8 22694061 to 22694081 20 - TSS region transcription start site region 80607
Tssr80608 8 22701530 to 22701579 49 - TSS region transcription start site region 80608
Cpgi20155 8 22705988 to 22706780 792 CpG island CpG island 20155
Tssr80609 8 22706507 to 22706580 73 - TSS region transcription start site region 80609
Tssr76589 8 22706626 to 22706632 6 + TSS region transcription start site region 76589
Tssr76590 8 22757726 to 22757729 3 + TSS region transcription start site region 76590
Plat 8 22757727 to 22782844 25117 + protein coding gene plasminogen activator, tissue
Tssr76591 8 22757745 to 22757761 16 + TSS region transcription start site region 76591
Tssr80610 8 22783444 to 22783447 3 - TSS region transcription start site region 80610
Ap3m2 8 22787354 to 22805622 18268 - protein coding gene adaptor-related protein complex 3, mu 2 subunit
D8Dcr5 8 22802019 to 22802114 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 5
Tssr80611 8 22803883 to 22803892 9 - TSS region transcription start site region 80611
Cpgi20156 8 22805307 to 22805903 596 CpG island CpG island 20156
Tssr80612 8 22805596 to 22805649 53 - TSS region transcription start site region 80612
1700041G16Rik 8 22805766 to 22809537 3771 + lincRNA gene RIKEN cDNA 1700041G16 gene
Cpgi20157 8 22807857 to 22808592 735 CpG island CpG island 20157
Gm46036 8 22811025 to 22861510 50485 - lncRNA gene predicted gene, 46036
Gm24735 8 22822428 to 22822545 117 - snRNA gene predicted gene, 24735
Cpgi20158 8 22858495 to 22860592 2097 CpG island CpG island 20158
Tssr80613 8 22859258 to 22859266 8 - TSS region transcription start site region 80613
Tssr76592 8 22859528 to 22859554 26 + TSS region transcription start site region 76592
Kat6a 8 22859535 to 22943259 83724 + protein coding gene K(lysine) acetyltransferase 6A
Gm18675 8 22871588 to 22872171 583 - pseudogene predicted gene, 18675
Cpgi20159 8 22871973 to 22872170 197 CpG island CpG island 20159
Gm45555 8 22873589 to 22876190 2601 + unclassified gene predicted gene 45555
Tssr76593 8 22922282 to 22922285 3 + TSS region transcription start site region 76593
Tssr76594 8 22938099 to 22938113 14 + TSS region transcription start site region 76594
Tssr76595 8 22938187 to 22938215 28 + TSS region transcription start site region 76595
Tssr76596 8 22938224 to 22938237 13 + TSS region transcription start site region 76596
Tssr76597 8 22939342 to 22939357 15 + TSS region transcription start site region 76597
Gm10043 8 22958207 to 22958441 234 - pseudogene predicted pseudogene 10043
Cpgi20160 8 22973954 to 22975854 1900 CpG island CpG island 20160
Ank1 8 22974844 to 23150497 175653 + protein coding gene ankyrin 1, erythroid
Tssr76598 8 22974846 to 22974882 36 + TSS region transcription start site region 76598
Tssr76599 8 22974886 to 22974903 17 + TSS region transcription start site region 76599
Tssr76600 8 22974923 to 22974932 9 + TSS region transcription start site region 76600
Tssr76601 8 23021969 to 23021972 3 + TSS region transcription start site region 76601
Tssr80614 8 23028720 to 23028741 21 - TSS region transcription start site region 80614
Gm30182 8 23032881 to 23034691 1810 - lncRNA gene predicted gene, 30182
Cpgi20161 8 23033856 to 23034147 291 CpG island CpG island 20161