Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:19297669-22492723

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257 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Defa-ps13 8 19300677 to 19304794 4117 + pseudogene defensin, alpha, pseudogene 13
Defa-ps14 8 19422506 to 19423444 938 + pseudogene defensin, alpha, pseudogene 14
Defb8 8 19445769 to 19447606 1837 - protein coding gene defensin beta 8
Defa-ps15 8 19472893 to 19474732 1839 - pseudogene defensin, alpha, pseudogene 15
Rpl19-ps11 8 19492936 to 19493526 590 + pseudogene ribosomal protein L19, pseudogene 11
Gm27288 8 19493189 to 19493268 79 + miRNA gene predicted gene, 27288
Defb7 8 19495097 to 19497775 2678 + protein coding gene defensin beta 7
Gm15358 8 19513878 to 19514397 519 - pseudogene predicted gene 15358
Tssr76543 8 19517032 to 19517041 9 + TSS region transcription start site region 76543
Cpgi20138 8 19535152 to 19536302 1150 CpG island CpG island 20138
Gm27852 8 19535319 to 19535408 89 - miRNA gene predicted gene, 27852
Tssr76544 8 19535426 to 19535463 37 + TSS region transcription start site region 76544
Gm16425 8 19535454 to 19538583 3129 + pseudogene predicted gene 16425
Tssr76545 8 19535826 to 19535843 17 + TSS region transcription start site region 76545
Selenot-ps 8 19579940 to 19580532 592 + pseudogene selenoprotein T, pseudogene
Gm35998 8 19580900 to 19638879 57979 - lincRNA gene predicted gene, 35998
Tssr80555 8 19600934 to 19600935 1 - TSS region transcription start site region 80555
Gm29789 8 19632898 to 19635441 2543 + pseudogene predicted gene, 29789
Tssr76546 8 19681871 to 19681877 6 + TSS region transcription start site region 76546
Gm6483 8 19682449 to 19697736 15287 + pseudogene predicted gene 6483
Tssr76547 8 19682630 to 19682665 35 + TSS region transcription start site region 76547
Tssr76548 8 19689079 to 19689099 20 + TSS region transcription start site region 76548
Tssr164693 8 19695005 to 19695019 14 + TSS region transcription start site region 164693
Tssr164694 8 19695048 to 19695071 23 + TSS region transcription start site region 164694
Tssr164695 8 19695226 to 19695240 14 + TSS region transcription start site region 164695
Tssr164696 8 19695266 to 19695300 34 + TSS region transcription start site region 164696
Tssr164697 8 19696093 to 19696104 11 + TSS region transcription start site region 164697
Tssr164698 8 19696129 to 19696143 14 + TSS region transcription start site region 164698
Tssr164699 8 19696196 to 19696207 11 + TSS region transcription start site region 164699
Gm7760 8 19711128 to 19711705 577 - pseudogene predicted gene 7760
4930467E23Rik 8 19729576 to 19753527 23951 + protein coding gene RIKEN cDNA 4930467E23 gene
Cpgi20139 8 19784621 to 19785213 592 CpG island CpG island 20139
Tssr76549 8 19784623 to 19784658 35 + TSS region transcription start site region 76549
Tssr164700 8 19784715 to 19784746 31 + TSS region transcription start site region 164700
Gm10060 8 19784746 to 19784850 104 + pseudogene predicted gene 10060
Gm26853 8 19789798 to 19798548 8750 + lincRNA gene predicted gene, 26853
Gm31371 8 19903392 to 19925713 22321 + protein coding gene predicted gene, 31371
Gm20786 8 19942830 to 19943265 435 - pseudogene predicted gene, 20786
Gm46075 8 19973994 to 19979937 5943 - lncRNA gene predicted gene, 46075
Tssr2508 8 19979996 to 19980042 46 + TSS region transcription start site region 2508
Tssr2509 8 19980050 to 19980062 12 + TSS region transcription start site region 2509
Gm40466 8 20001099 to 20008736 7637 + lncRNA gene predicted gene, 40466
Gm36166 8 20013842 to 20016268 2426 + lncRNA gene predicted gene, 36166
Gm45754 8 20019133 to 20019411 278 - pseudogene predicted gene 45754
Gm20778 8 20035108 to 20040320 5212 + pseudogene predicted gene, 20778
Gm21769 8 20122384 to 20122494 110 + pseudogene predicted gene, 21769
Gm21811 8 20136502 to 20151665 15163 + pseudogene predicted gene, 21811
Gm40468 8 20257557 to 20261199 3642 - lncRNA gene predicted gene, 40468
6820431F20Rik 8 20268286 to 20297432 29146 - pseudogene RIKEN cDNA 6820431F20 gene
Gm26804 8 20292477 to 20420781 128304 + lincRNA gene predicted gene, 26804
Cpgi20140 8 20296948 to 20297555 607 CpG island CpG island 20140
Gm20583 8 20297324 to 20297428 104 - pseudogene predicted gene, 20583
Tssr80556 8 20297518 to 20297549 31 - TSS region transcription start site region 80556
Gm15319 8 20337664 to 20363210 25546 - protein coding gene predicted gene 15319
Gm7807 8 20381081 to 20381658 577 + pseudogene predicted gene 7807
2610005L07Rik 8 20385782 to 20424814 39032 - pseudogene RIKEN cDNA 2610005L07 gene
Cpgi20141 8 20424245 to 20424870 625 CpG island CpG island 20141
Gm20584 8 20424592 to 20424696 104 - pseudogene predicted gene, 20584
Tssr164701 8 20424796 to 20424814 18 - TSS region transcription start site region 164701
Gm40467 8 20498274 to 20512049 13775 + lncRNA gene predicted gene, 40467
Tssr2510 8 20550210 to 20550227 17 + TSS region transcription start site region 2510
Gm21182 8 20556693 to 20557486 793 - pseudogene predicted gene, 21182
Gm21092 8 20567597 to 20582771 15174 + pseudogene predicted gene, 21092
Gm21112 8 20596464 to 20597041 577 - pseudogene predicted gene, 21112
Gm21119 8 20614919 to 20640703 25784 + protein coding gene predicted gene, 21119
Gm46074 8 20649947 to 20652334 2387 + lncRNA gene predicted gene, 46074
Gm20946 8 20828353 to 20833219 4866 + pseudogene predicted gene, 20946
Gm20797 8 20841352 to 20842350 998 - pseudogene predicted gene, 20797
Gm20945 8 20869506 to 20870650 1144 - pseudogene predicted gene, 20945
Gm21944 8 20876499 to 20889113 12614 + pseudogene predicted gene, 21944
Gm20796 8 20882363 to 20888200 5837 - pseudogene predicted gene, 20796
Tssr2511 8 20892665 to 20892668 3 + TSS region transcription start site region 2511
Defb33 8 20892669 to 20897723 5054 + protein coding gene defensin beta 33
Gm15056 8 20900606 to 20901984 1378 - protein coding gene predicted gene 15056
Tssr80557 8 20902452 to 20902459 7 - TSS region transcription start site region 80557
Tssr80558 8 20902466 to 20902477 11 - TSS region transcription start site region 80558
Tssr80559 8 20902494 to 20902501 7 - TSS region transcription start site region 80559
Gm6040 8 20916490 to 20922071 5581 - protein coding gene predicted gene 6040
Tssr80560 8 20922042 to 20922049 7 - TSS region transcription start site region 80560
Tssr80561 8 20922059 to 20922086 27 - TSS region transcription start site region 80561
Tssr80562 8 20922092 to 20922098 6 - TSS region transcription start site region 80562
AY761185 8 20943694 to 20944710 1016 - protein coding gene cDNA sequence AY761185
Tssr80563 8 20944752 to 20944756 4 - TSS region transcription start site region 80563
Defa21 8 21025545 to 21026516 971 + protein coding gene defensin, alpha, 21
Gm23142 8 21040256 to 21040360 104 - snRNA gene predicted gene, 23142
Defa23 8 21055047 to 21056016 969 + protein coding gene defensin, alpha, 23
Defa35 8 21065038 to 21065996 958 + protein coding gene defensin, alpha, 35
Defa-ps3 8 21078141 to 21078846 705 + pseudogene defensin, alpha, pseudogene 3
Tssr76550 8 21084395 to 21084400 5 + TSS region transcription start site region 76550
Defa25 8 21084442 to 21085285 843 + protein coding gene defensin, alpha, 25
Gm6689 8 21091366 to 21091846 480 + pseudogene predicted gene 6689
Gm14851 8 21095074 to 21096050 976 - protein coding gene predicted gene 14851
Gm24568 8 21095624 to 21095715 91 - snoRNA gene predicted gene, 24568
Gm2869 8 21100651 to 21103271 2620 + pseudogene predicted gene 2869
Defa-ps4 8 21119166 to 21119348 182 + pseudogene defensin, alpha, pseudogene 4
Tssr76551 8 21134610 to 21134627 17 + TSS region transcription start site region 76551
Defa30 8 21134650 to 21135598 948 + protein coding gene defensin, alpha, 30
Defa22 8 21162277 to 21163249 972 + protein coding gene defensin, alpha, 22
Gm26240 8 21176768 to 21176872 104 - snRNA gene predicted gene, 26240
Defa31 8 21191614 to 21192549 935 + protein coding gene defensin, alpha, 31
Gm15293 8 21201604 to 21202446 842 + protein coding gene predicted gene 15293
Defa-ps5 8 21218984 to 21219763 779 + pseudogene defensin, alpha, pseudogene 5
Defa-ps6 8 21225406 to 21225577 171 + pseudogene defensin, alpha, pseudogene 6
Defa-ps7 8 21232066 to 21232233 167 - pseudogene defensin, alpha, pseudogene 7
Tssr80564 8 21232270 to 21232278 8 - TSS region transcription start site region 80564
Gm15303 8 21236674 to 21239297 2623 + pseudogene predicted gene 15303
Tssr76552 8 21249713 to 21249720 7 + TSS region transcription start site region 76552
Gm15292 8 21249762 to 21250461 699 + protein coding gene predicted gene 15292
Defa-ps8 8 21270693 to 21271997 1304 + pseudogene defensin, alpha, pseudogene 8
Defa3 8 21287409 to 21288377 968 + protein coding gene defensin, alpha, 3
Defa5 8 21297439 to 21298375 936 + protein coding gene defensin, alpha, 5
Gm15300 8 21309162 to 21309942 780 + pseudogene predicted gene 15300
Defa27 8 21315546 to 21316387 841 + protein coding gene defensin, alpha, 27
Defa29 8 21325888 to 21327020 1132 - protein coding gene defensin, alpha, 29
Gm23561 8 21326548 to 21326639 91 - snoRNA gene predicted gene, 23561
Tssr80565 8 21327015 to 21327020 5 - TSS region transcription start site region 80565
Gm15302 8 21330947 to 21333576 2629 + pseudogene predicted gene 15302
Defa-ps16 8 21342586 to 21342756 170 + pseudogene defensin, alpha, pseudogene 16
Defa2 8 21378517 to 21379495 978 + protein coding gene defensin, alpha, 2
Defa33 8 21391811 to 21392791 980 + protein coding gene defensin, alpha, 33
Defa36 8 21427428 to 21428386 958 + protein coding gene defensin, alpha, 36
Gm15305 8 21438675 to 21439467 792 + pseudogene predicted gene 15305
Defa-ps18 8 21445069 to 21445910 841 + pseudogene defensin, alpha, pseudogene 18
Gm15309 8 21454424 to 21454663 239 + pseudogene predicted gene 15309
Gm7849 8 21455427 to 21456517 1090 - protein coding gene predicted gene 7849
Gm23568 8 21456090 to 21456181 91 - snoRNA gene predicted gene, 23568
Gm15304 8 21460958 to 21463597 2639 + pseudogene predicted gene 15304
Tssr76553 8 21473204 to 21473208 4 + TSS region transcription start site region 76553
Defa-ps17 8 21473251 to 21473421 170 + pseudogene defensin, alpha, pseudogene 17
Defa20 8 21509258 to 21510237 979 + protein coding gene defensin, alpha, 20
Tssr76554 8 21529031 to 21529032 1 + TSS region transcription start site region 76554
Defa32 8 21529032 to 21530012 980 + protein coding gene defensin, alpha, 32
Gm24423 8 21548060 to 21548165 105 - snRNA gene predicted gene, 24423
Tssr76555 8 21565368 to 21565373 5 + TSS region transcription start site region 76555
Defa37 8 21565386 to 21566349 963 + protein coding gene defensin, alpha, 37
Gm15311 8 21576640 to 21577426 786 + pseudogene predicted gene 15311
Defa28 8 21582960 to 21583867 907 + protein coding gene defensin, alpha, 28
Gm15312 8 21592341 to 21592610 269 + pseudogene predicted gene 15312
Gm7861 8 21593487 to 21594465 978 - protein coding gene predicted gene 7861
Gm24829 8 21594038 to 21594129 91 - snoRNA gene predicted gene, 24829
Gm15314 8 21598905 to 21600791 1886 + pseudogene predicted gene 15314
Defa26 8 21618183 to 21618972 789 + protein coding gene defensin, alpha, 26
Gm15313 8 21639071 to 21640378 1307 + pseudogene predicted gene 15313
Defa17 8 21655780 to 21656735 955 + protein coding gene defensin, alpha, 17
Defa34 8 21665797 to 21666732 935 + protein coding gene defensin, alpha, 34
Defa-ps9 8 21688648 to 21689428 780 + pseudogene defensin, alpha, pseudogene 9
Defa-ps1 8 21695012 to 21695853 841 + pseudogene defensin, alpha, pseudogene 1
AY761184 8 21702524 to 21703647 1123 - protein coding gene cDNA sequence AY761184
Tssr80566 8 21702709 to 21702729 20 - TSS region transcription start site region 80566
Gm22447 8 21703175 to 21703266 91 - snoRNA gene predicted gene, 22447
Tssr80567 8 21703642 to 21703649 7 - TSS region transcription start site region 80567
Gm7869 8 21708029 to 21709350 1321 + pseudogene predicted gene 7869
Tssr76556 8 21722024 to 21722025 1 + TSS region transcription start site region 76556
Defa-ps10 8 21722070 to 21722240 170 + pseudogene defensin, alpha, pseudogene 10
Tssr76557 8 21734490 to 21734496 6 + TSS region transcription start site region 76557
Defa24 8 21734494 to 21735471 977 + protein coding gene defensin, alpha, 24
Defa-ps11 8 21749175 to 21750000 825 + pseudogene defensin, alpha, pseudogene 11
Tssr80568 8 21756839 to 21756863 24 - TSS region transcription start site region 80568
Tssr76558 8 21776567 to 21776595 28 + TSS region transcription start site region 76558
Defb1 8 21776599 to 21795185 18586 + protein coding gene defensin beta 1
Gm15316 8 21816964 to 21817384 420 - pseudogene predicted gene 15316
Tssr76559 8 21823533 to 21823548 15 + TSS region transcription start site region 76559
Defb50 8 21823539 to 21831296 7757 + protein coding gene defensin beta 50
Defb2 8 21839926 to 21843482 3556 + protein coding gene defensin beta 2
Defb10 8 21858901 to 21862011 3110 + protein coding gene defensin beta 10
Defb9 8 21881713 to 21885421 3708 - protein coding gene defensin beta 9
Tssr80569 8 21885426 to 21885443 17 - TSS region transcription start site region 80569
Defb11 8 21905376 to 21906412 1036 - protein coding gene defensin beta 11
Tssr80570 8 21906426 to 21906437 11 - TSS region transcription start site region 80570
Gm36879 8 21906664 to 21934313 27649 + antisense lncRNA gene predicted gene, 36879
Defb15 8 21929813 to 21932710 2897 - protein coding gene defensin beta 15
Tssr80571 8 21932708 to 21932716 8 - TSS region transcription start site region 80571
Tssr76560 8 21935310 to 21935319 9 + TSS region transcription start site region 76560
Gm45796 8 21935351 to 21935824 473 + pseudogene predicted gene 45796
Defb35 8 21938352 to 21940878 2526 + protein coding gene defensin beta 35
Tssr76561 8 21946750 to 21946762 12 + TSS region transcription start site region 76561
Defb13 8 21946762 to 21948622 1860 + protein coding gene defensin beta 13
Gm29821 8 21947674 to 21969608 21934 - lncRNA gene predicted gene, 29821
Fam90a1a 8 21958714 to 21964303 5589 + protein coding gene family with sequence similarity 90, member A1A
Tssr76562 8 21969769 to 21969780 11 + TSS region transcription start site region 76562
Ccdc70 8 21969775 to 21974041 4266 + protein coding gene coiled-coil domain containing 70
Tssr76563 8 21969828 to 21969833 5 + TSS region transcription start site region 76563
Tssr80572 8 21970422 to 21970467 45 - TSS region transcription start site region 80572
Tssr76564 8 21970570 to 21970575 5 + TSS region transcription start site region 76564
Tssr76565 8 21970590 to 21970608 18 + TSS region transcription start site region 76565
D8Dcr4 8 21981229 to 21981326 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 4
Atp7b 8 21992783 to 22060074 67291 - protein coding gene ATPase, Cu++ transporting, beta polypeptide
Tssr80573 8 21993405 to 21993410 5 - TSS region transcription start site region 80573
Tssr80574 8 22006583 to 22006584 1 - TSS region transcription start site region 80574
Tssr80575 8 22039582 to 22039585 3 - TSS region transcription start site region 80575
Tssr80576 8 22039607 to 22039625 18 - TSS region transcription start site region 80576
Tssr80577 8 22039628 to 22039649 21 - TSS region transcription start site region 80577
Cpgi20142 8 22059845 to 22060989 1144 CpG island CpG island 20142
Tssr80578 8 22060019 to 22060056 37 - TSS region transcription start site region 80578
Tssr80579 8 22060310 to 22060336 26 - TSS region transcription start site region 80579
Tssr76566 8 22060712 to 22060732 20 + TSS region transcription start site region 76566
Alg11 8 22060721 to 22071627 10906 + protein coding gene asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)
Nek5 8 22073616 to 22125053 51437 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 5
Cpgi20143 8 22124789 to 22125163 374 CpG island CpG island 20143
Tssr80580 8 22125030 to 22125073 43 - TSS region transcription start site region 80580