Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:19060934-20140935

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Defb39 8 19052826 to 19064810 11984 - protein coding gene defensin beta 39
Tssr76530 8 19062951 to 19062955 4 + TSS region transcription start site region 76530
Tssr80545 8 19064865 to 19064880 15 - TSS region transcription start site region 80545
Tssr80546 8 19064885 to 19064907 22 - TSS region transcription start site region 80546
Tssr80547 8 19064912 to 19064932 20 - TSS region transcription start site region 80547
Tssr80548 8 19064947 to 19064950 3 - TSS region transcription start site region 80548
Defb12 8 19111931 to 19114833 2902 - protein coding gene defensin beta 12
Tssr2505 8 19113197 to 19113208 11 + TSS region transcription start site region 2505
Tssr80549 8 19114830 to 19114838 8 - TSS region transcription start site region 80549
Tssr2506 8 19123714 to 19123715 1 + TSS region transcription start site region 2506
Defb34 8 19123752 to 19126540 2788 + protein coding gene defensin beta 34
Tssr76531 8 19140751 to 19140767 16 + TSS region transcription start site region 76531
Spag11b 8 19140759 to 19143010 2251 + protein coding gene sperm associated antigen 11B
Gm45826 8 19140778 to 19159440 18662 + protein coding gene predicted gene 45826
Tssr76532 8 19141371 to 19141383 12 + TSS region transcription start site region 76532
Tssr76533 8 19141429 to 19141440 11 + TSS region transcription start site region 76533
Tssr76534 8 19141447 to 19141469 22 + TSS region transcription start site region 76534
Tssr80550 8 19141471 to 19141518 47 - TSS region transcription start site region 80550
Tssr76535 8 19141482 to 19141496 14 + TSS region transcription start site region 76535
Tssr76536 8 19142604 to 19142612 8 + TSS region transcription start site region 76536
Tssr80551 8 19142658 to 19142661 3 - TSS region transcription start site region 80551
Tssr80552 8 19142833 to 19142840 7 - TSS region transcription start site region 80552
Tssr76537 8 19150756 to 19150760 4 + TSS region transcription start site region 76537
Tssr2507 8 19157846 to 19157853 7 + TSS region transcription start site region 2507
Tssr76538 8 19157879 to 19157893 14 + TSS region transcription start site region 76538
Spag11a 8 19157886 to 19159578 1692 + protein coding gene sperm associated antigen 11A
Tssr80553 8 19158634 to 19158666 32 - TSS region transcription start site region 80553
Gm46034 8 19160244 to 19162222 1978 + lncRNA gene predicted gene, 46034
Tssr76539 8 19163911 to 19163919 8 + TSS region transcription start site region 76539
D8Mit335 8 19165366 to 19165488 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 335
Gm39139 8 19185888 to 19188065 2177 - lincRNA gene predicted gene, 39139
D8Mit159 8 19186980 to 19187169 189 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 159
Tssr76540 8 19194319 to 19194333 14 + TSS region transcription start site region 76540
Defb14 8 19194357 to 19195212 855 + protein coding gene defensin beta 14
Tssr80554 8 19197144 to 19197150 6 - TSS region transcription start site region 80554
Tssr76541 8 19198702 to 19198706 4 + TSS region transcription start site region 76541
Defb4 8 19198706 to 19201545 2839 + protein coding gene defensin beta 4
Defa-ps12 8 19210462 to 19212760 2298 + pseudogene defensin, alpha, pseudogene 12
Tssr76542 8 19225474 to 19225482 8 + TSS region transcription start site region 76542
Defb6 8 19225478 to 19228209 2731 + protein coding gene defensin beta 6
Defb46 8 19239916 to 19242143 2227 + protein coding gene defensin beta 46
Defb5 8 19247592 to 19250828 3236 + protein coding gene defensin beta 5
Gm15357 8 19279009 to 19279846 837 - pseudogene predicted gene 15357
Defb3 8 19293360 to 19295291 1931 + protein coding gene defensin beta 3
Defa-ps13 8 19300677 to 19304794 4117 + pseudogene defensin, alpha, pseudogene 13
Defa-ps14 8 19422506 to 19423444 938 + pseudogene defensin, alpha, pseudogene 14
Defb8 8 19445769 to 19447606 1837 - protein coding gene defensin beta 8
Defa-ps15 8 19472893 to 19474732 1839 - pseudogene defensin, alpha, pseudogene 15
Rpl19-ps11 8 19492936 to 19493526 590 + pseudogene ribosomal protein L19, pseudogene 11
Gm27288 8 19493189 to 19493268 79 + miRNA gene predicted gene, 27288
Defb7 8 19495097 to 19497775 2678 + protein coding gene defensin beta 7
Gm15358 8 19513878 to 19514397 519 - pseudogene predicted gene 15358
Tssr76543 8 19517032 to 19517041 9 + TSS region transcription start site region 76543
Cpgi20138 8 19535152 to 19536302 1150 CpG island CpG island 20138
Gm27852 8 19535319 to 19535408 89 - miRNA gene predicted gene, 27852
Tssr76544 8 19535426 to 19535463 37 + TSS region transcription start site region 76544
Gm16425 8 19535454 to 19538583 3129 + pseudogene predicted gene 16425
Tssr76545 8 19535826 to 19535843 17 + TSS region transcription start site region 76545
Selenot-ps 8 19579940 to 19580532 592 + pseudogene selenoprotein T, pseudogene
Gm35998 8 19580900 to 19638879 57979 - lincRNA gene predicted gene, 35998
Tssr80555 8 19600934 to 19600935 1 - TSS region transcription start site region 80555
Gm29789 8 19632898 to 19635441 2543 + pseudogene predicted gene, 29789
Tssr76546 8 19681871 to 19681877 6 + TSS region transcription start site region 76546
Gm6483 8 19682449 to 19697736 15287 + pseudogene predicted gene 6483
Tssr76547 8 19682630 to 19682665 35 + TSS region transcription start site region 76547
Tssr76548 8 19689079 to 19689099 20 + TSS region transcription start site region 76548
Tssr164693 8 19695005 to 19695019 14 + TSS region transcription start site region 164693
Tssr164694 8 19695048 to 19695071 23 + TSS region transcription start site region 164694
Tssr164695 8 19695226 to 19695240 14 + TSS region transcription start site region 164695
Tssr164696 8 19695266 to 19695300 34 + TSS region transcription start site region 164696
Tssr164697 8 19696093 to 19696104 11 + TSS region transcription start site region 164697
Tssr164698 8 19696129 to 19696143 14 + TSS region transcription start site region 164698
Tssr164699 8 19696196 to 19696207 11 + TSS region transcription start site region 164699
Gm7760 8 19711128 to 19711705 577 - pseudogene predicted gene 7760
4930467E23Rik 8 19729576 to 19753527 23951 + protein coding gene RIKEN cDNA 4930467E23 gene
Cpgi20139 8 19784621 to 19785213 592 CpG island CpG island 20139
Tssr76549 8 19784623 to 19784658 35 + TSS region transcription start site region 76549
Tssr164700 8 19784715 to 19784746 31 + TSS region transcription start site region 164700
Gm10060 8 19784746 to 19784850 104 + pseudogene predicted gene 10060
Gm26853 8 19789798 to 19798548 8750 + lincRNA gene predicted gene, 26853
Gm31371 8 19903392 to 19925713 22321 + protein coding gene predicted gene, 31371
Gm20786 8 19942830 to 19943265 435 - pseudogene predicted gene, 20786
Gm46075 8 19973994 to 19979937 5943 - lncRNA gene predicted gene, 46075
Tssr2508 8 19979996 to 19980042 46 + TSS region transcription start site region 2508
Tssr2509 8 19980050 to 19980062 12 + TSS region transcription start site region 2509
Gm40466 8 20001099 to 20008736 7637 + lncRNA gene predicted gene, 40466
Gm36166 8 20013842 to 20016268 2426 + lncRNA gene predicted gene, 36166
Gm45754 8 20019133 to 20019411 278 - pseudogene predicted gene 45754
Gm20778 8 20035108 to 20040320 5212 + pseudogene predicted gene, 20778
Gm21769 8 20122384 to 20122494 110 + pseudogene predicted gene, 21769
Gm21811 8 20136502 to 20151665 15163 + pseudogene predicted gene, 21811