Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:18743702-19653706

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcph1 8 18595131 to 18803189 208058 + protein coding gene microcephaly, primary autosomal recessive 1
Tssr80533 8 18768194 to 18768209 15 - TSS region transcription start site region 80533
D8Mit62 8 18771225 to 18771344 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 62
9630029G12Rik 8 18844180 to 18846775 2595 unclassified non-coding RNA gene RIKEN cDNA 9630029G12 gene
Cpgi20136 8 18845790 to 18847159 1369 CpG island CpG island 20136
Tssr80534 8 18846147 to 18846190 43 - TSS region transcription start site region 80534
Tssr76523 8 18846251 to 18846328 77 + TSS region transcription start site region 76523
Agpat5 8 18846279 to 18884413 38134 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
Tssr76524 8 18846468 to 18846489 21 + TSS region transcription start site region 76524
Tssr76525 8 18846491 to 18846512 21 + TSS region transcription start site region 76525
Tssr76526 8 18846524 to 18846544 20 + TSS region transcription start site region 76526
Tssr76527 8 18846580 to 18846593 13 + TSS region transcription start site region 76527
Gm45493 8 18862196 to 18866143 3947 + unclassified gene predicted gene 45493
Tssr76528 8 18882226 to 18882245 19 + TSS region transcription start site region 76528
Gm35934 8 18890192 to 18902291 12099 - antisense lncRNA gene predicted gene, 35934
Tssr76529 8 18899612 to 18899617 5 + TSS region transcription start site region 76529
Tssr80535 8 18902268 to 18902277 9 - TSS region transcription start site region 80535
Gm45770 8 18905439 to 18906533 1094 - pseudogene predicted gene 45770
Xkr5 8 18932729 to 18950975 18246 - protein coding gene X-linked Kx blood group related 5
Gm22551 8 18932989 to 18933091 102 + snoRNA gene predicted gene, 22551
Gm40464 8 18950289 to 18970684 20395 + lncRNA gene predicted gene, 40464
Cpgi20137 8 18950324 to 18951026 702 CpG island CpG island 20137
Tssr80536 8 18950932 to 18950965 33 - TSS region transcription start site region 80536
Defb40 8 18974940 to 18978116 3176 - protein coding gene defensin beta 40
Tssr80537 8 18978191 to 18978201 10 - TSS region transcription start site region 80537
Tssr80538 8 18978211 to 18978227 16 - TSS region transcription start site region 80538
Defb37 8 18986233 to 18991055 4822 - protein coding gene defensin beta 37
Gm39138 8 18989004 to 18998649 9645 + lncRNA gene predicted gene, 39138
Tssr80539 8 18990992 to 18991001 9 - TSS region transcription start site region 80539
Tssr80540 8 18991028 to 18991041 13 - TSS region transcription start site region 80540
Tssr80541 8 18991046 to 18991061 15 - TSS region transcription start site region 80541
Defb38 8 19023464 to 19026529 3065 - protein coding gene defensin beta 38
Tssr80542 8 19026543 to 19026557 14 - TSS region transcription start site region 80542
Tssr80543 8 19026558 to 19026573 15 - TSS region transcription start site region 80543
Tssr80544 8 19026582 to 19026587 5 - TSS region transcription start site region 80544
Gm15366 8 19037428 to 19038446 1018 - pseudogene predicted gene 15366
Defb39 8 19052826 to 19064810 11984 - protein coding gene defensin beta 39
Tssr76530 8 19062951 to 19062955 4 + TSS region transcription start site region 76530
Tssr80545 8 19064865 to 19064880 15 - TSS region transcription start site region 80545
Tssr80546 8 19064885 to 19064907 22 - TSS region transcription start site region 80546
Tssr80547 8 19064912 to 19064932 20 - TSS region transcription start site region 80547
Tssr80548 8 19064947 to 19064950 3 - TSS region transcription start site region 80548
Defb12 8 19111931 to 19114833 2902 - protein coding gene defensin beta 12
Tssr2505 8 19113197 to 19113208 11 + TSS region transcription start site region 2505
Tssr80549 8 19114830 to 19114838 8 - TSS region transcription start site region 80549
Tssr2506 8 19123714 to 19123715 1 + TSS region transcription start site region 2506
Defb34 8 19123752 to 19126540 2788 + protein coding gene defensin beta 34
Tssr76531 8 19140751 to 19140767 16 + TSS region transcription start site region 76531
Spag11b 8 19140759 to 19143010 2251 + protein coding gene sperm associated antigen 11B
Gm45826 8 19140778 to 19159440 18662 + protein coding gene predicted gene 45826
Tssr76532 8 19141371 to 19141383 12 + TSS region transcription start site region 76532
Tssr76533 8 19141429 to 19141440 11 + TSS region transcription start site region 76533
Tssr76534 8 19141447 to 19141469 22 + TSS region transcription start site region 76534
Tssr80550 8 19141471 to 19141518 47 - TSS region transcription start site region 80550
Tssr76535 8 19141482 to 19141496 14 + TSS region transcription start site region 76535
Tssr76536 8 19142604 to 19142612 8 + TSS region transcription start site region 76536
Tssr80551 8 19142658 to 19142661 3 - TSS region transcription start site region 80551
Tssr80552 8 19142833 to 19142840 7 - TSS region transcription start site region 80552
Tssr76537 8 19150756 to 19150760 4 + TSS region transcription start site region 76537
Tssr2507 8 19157846 to 19157853 7 + TSS region transcription start site region 2507
Tssr76538 8 19157879 to 19157893 14 + TSS region transcription start site region 76538
Spag11a 8 19157886 to 19159578 1692 + protein coding gene sperm associated antigen 11A
Tssr80553 8 19158634 to 19158666 32 - TSS region transcription start site region 80553
Gm46034 8 19160244 to 19162222 1978 + lncRNA gene predicted gene, 46034
Tssr76539 8 19163911 to 19163919 8 + TSS region transcription start site region 76539
D8Mit335 8 19165366 to 19165488 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 335
Gm39139 8 19185888 to 19188065 2177 - lincRNA gene predicted gene, 39139
D8Mit159 8 19186980 to 19187169 189 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 159
Tssr76540 8 19194319 to 19194333 14 + TSS region transcription start site region 76540
Defb14 8 19194357 to 19195212 855 + protein coding gene defensin beta 14
Tssr80554 8 19197144 to 19197150 6 - TSS region transcription start site region 80554
Tssr76541 8 19198702 to 19198706 4 + TSS region transcription start site region 76541
Defb4 8 19198706 to 19201545 2839 + protein coding gene defensin beta 4
Defa-ps12 8 19210462 to 19212760 2298 + pseudogene defensin, alpha, pseudogene 12
Tssr76542 8 19225474 to 19225482 8 + TSS region transcription start site region 76542
Defb6 8 19225478 to 19228209 2731 + protein coding gene defensin beta 6
Defb46 8 19239916 to 19242143 2227 + protein coding gene defensin beta 46
Defb5 8 19247592 to 19250828 3236 + protein coding gene defensin beta 5
Gm15357 8 19279009 to 19279846 837 - pseudogene predicted gene 15357
Defb3 8 19293360 to 19295291 1931 + protein coding gene defensin beta 3
Defa-ps13 8 19300677 to 19304794 4117 + pseudogene defensin, alpha, pseudogene 13
Defa-ps14 8 19422506 to 19423444 938 + pseudogene defensin, alpha, pseudogene 14
Defb8 8 19445769 to 19447606 1837 - protein coding gene defensin beta 8
Defa-ps15 8 19472893 to 19474732 1839 - pseudogene defensin, alpha, pseudogene 15
Rpl19-ps11 8 19492936 to 19493526 590 + pseudogene ribosomal protein L19, pseudogene 11
Gm27288 8 19493189 to 19493268 79 + miRNA gene predicted gene, 27288
Defb7 8 19495097 to 19497775 2678 + protein coding gene defensin beta 7
Gm15358 8 19513878 to 19514397 519 - pseudogene predicted gene 15358
Tssr76543 8 19517032 to 19517041 9 + TSS region transcription start site region 76543
Cpgi20138 8 19535152 to 19536302 1150 CpG island CpG island 20138
Gm27852 8 19535319 to 19535408 89 - miRNA gene predicted gene, 27852
Tssr76544 8 19535426 to 19535463 37 + TSS region transcription start site region 76544
Gm16425 8 19535454 to 19538583 3129 + pseudogene predicted gene 16425
Tssr76545 8 19535826 to 19535843 17 + TSS region transcription start site region 76545
Selenot-ps 8 19579940 to 19580532 592 + pseudogene selenoprotein T, pseudogene
Gm35998 8 19580900 to 19638879 57979 - lincRNA gene predicted gene, 35998
Tssr80555 8 19600934 to 19600935 1 - TSS region transcription start site region 80555
Gm29789 8 19632898 to 19635441 2543 + pseudogene predicted gene, 29789